Wall clock time and date at job start Tue Mar 31 2020 15:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47277 * 2 1 4 4 H 1.09001 * 109.46900 * 56.88180 * 3 2 1 5 5 N 1.46898 * 109.46808 * 296.88649 * 3 2 1 6 6 C 1.46905 * 110.99854 * 154.17763 * 5 3 2 7 7 C 1.53047 * 109.45776 * 273.87694 * 6 5 3 8 8 C 1.53185 * 109.31422 * 178.61197 * 7 6 5 9 9 N 1.46932 * 108.77573 * 54.63296 * 8 7 6 10 10 C 1.36936 * 120.63016 * 126.36645 * 9 8 7 11 11 H 1.07994 * 120.00260 * 210.17924 * 10 9 8 12 12 C 1.38817 * 119.99821 * 30.18124 * 10 9 8 13 13 N 1.31616 * 119.99960 * 18.47395 * 12 10 9 14 14 Si 1.86802 * 119.99780 * 198.46825 * 12 10 9 15 15 H 1.48497 * 109.47245 * 94.96718 * 14 12 10 16 16 H 1.48497 * 109.46959 * 214.96956 * 14 12 10 17 17 H 1.48495 * 109.47138 * 334.96623 * 14 12 10 18 18 C 1.46925 * 118.73896 * 306.39227 * 9 8 7 19 19 C 1.53034 * 109.46456 * 153.80942 * 6 5 3 20 20 C 1.50696 * 109.47004 * 176.88445 * 3 2 1 21 21 S 1.75882 * 125.20204 * 74.94829 * 20 3 2 22 22 C 1.75876 * 90.98322 * 180.02562 * 21 20 3 23 23 C 1.33404 * 109.60514 * 0.02562 * 22 21 20 24 24 C 1.33440 * 125.20014 * 255.00244 * 20 3 2 25 25 Cl 1.73599 * 122.55176 * 0.22015 * 24 20 3 26 26 H 1.09004 * 109.47106 * 185.24849 * 1 2 3 27 27 H 1.09000 * 109.46654 * 305.24588 * 1 2 3 28 28 H 1.09000 * 109.47062 * 65.24245 * 1 2 3 29 29 H 1.09004 * 109.46468 * 240.00231 * 2 1 3 30 30 H 1.08999 * 109.46753 * 120.00430 * 2 1 3 31 31 H 1.00897 * 111.00235 * 278.12124 * 5 3 2 32 32 H 1.08999 * 109.46049 * 33.83077 * 6 5 3 33 33 H 1.09000 * 109.49425 * 298.56993 * 7 6 5 34 34 H 1.08998 * 109.49438 * 58.66251 * 7 6 5 35 35 H 1.08997 * 109.58988 * 294.84735 * 8 7 6 36 36 H 1.09001 * 109.70467 * 174.48873 * 8 7 6 37 37 H 0.97003 * 119.99670 * 180.02562 * 13 12 10 38 38 H 1.08998 * 109.58637 * 293.82002 * 18 9 8 39 39 H 1.08999 * 109.70567 * 173.45952 * 18 9 8 40 40 H 1.08997 * 109.49611 * 301.33590 * 19 6 5 41 41 H 1.09007 * 109.49987 * 61.39448 * 19 6 5 42 42 H 1.07999 * 125.20006 * 179.97438 * 22 21 20 43 43 H 1.08003 * 122.54256 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6318 1.9722 0.8607 5 7 1.6128 2.1128 -1.2353 6 6 1.5207 3.5660 -1.0408 7 6 0.1408 3.9191 -0.4808 8 6 0.0607 5.4308 -0.2468 9 7 0.3987 6.1218 -1.4987 10 6 -0.4486 7.0570 -2.0302 11 1 -0.4886 7.2038 -3.0994 12 6 -1.2563 7.8163 -1.1947 13 7 -0.9698 7.9147 0.0861 14 14 -2.7496 8.6986 -1.8883 15 1 -3.9558 7.8531 -1.7002 16 1 -2.9349 9.9902 -1.1794 17 1 -2.5451 8.9540 -3.3368 18 6 1.6630 5.7898 -2.1696 19 6 1.7252 4.2740 -2.3821 20 6 3.5450 1.4431 0.0772 21 16 4.6285 1.0452 -1.2499 22 6 6.0321 1.3192 -0.2261 23 6 5.6322 1.6760 0.9955 24 6 4.2594 1.7446 1.1632 25 17 3.5236 2.1828 2.6733 26 1 -0.3633 -1.0234 0.0940 27 1 -0.3632 0.5931 0.8393 28 1 -0.3633 0.4304 -0.9332 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 2.2310 1.8890 -2.0006 32 1 2.2903 3.8880 -0.3393 33 1 -0.6282 3.6198 -1.1930 34 1 -0.0134 3.3962 0.4630 35 1 0.7676 5.7182 0.5315 36 1 -0.9497 5.7023 0.0590 37 1 -1.5345 8.4450 0.6700 38 1 2.5006 6.1064 -1.5481 39 1 1.7114 6.2961 -3.1337 40 1 2.6985 4.0036 -2.7915 41 1 0.9415 3.9709 -3.0766 42 1 7.0606 1.2137 -0.5384 43 1 6.3266 1.8957 1.7931 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883187566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:50 Heat of formation + Delta-G solvation = 21.946800 kcal Electronic energy + Delta-G solvation = -24262.882459 eV Core-core repulsion = 20880.893873 eV Total energy + Delta-G solvation = -3381.988587 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.107 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.22771 -39.10350 -37.46184 -36.90648 -34.96301 -33.08699 -31.70178 -31.23104 -30.01228 -27.07033 -25.94254 -24.36938 -23.96519 -23.10501 -21.85095 -20.77925 -20.45283 -18.68281 -18.44690 -17.28852 -16.83672 -16.31774 -15.91830 -15.63451 -15.34563 -15.20391 -14.88998 -14.65497 -14.56508 -14.40996 -14.17474 -13.90458 -13.70452 -13.10193 -12.98041 -12.95186 -12.75206 -12.61101 -12.50276 -12.38393 -12.20075 -12.02941 -11.95566 -11.84771 -11.83561 -11.79255 -11.64614 -11.26884 -11.11857 -10.55768 -9.76913 -9.49511 -9.36961 -8.67507 -7.88053 -5.34603 -0.17806 0.25784 0.78180 1.46407 1.46640 1.48343 1.56923 1.57486 2.51475 3.07076 3.28794 3.50658 3.68689 3.96031 4.01416 4.15384 4.24614 4.28722 4.30973 4.42779 4.54970 4.57315 4.71291 4.73735 4.78336 4.85574 4.94792 4.98199 5.01253 5.06344 5.11206 5.14314 5.16952 5.20271 5.33208 5.38654 5.48133 5.57400 5.65823 5.72382 6.03456 6.38348 6.42952 7.14686 7.85331 8.39408 9.18716 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.016519 B = 0.003471 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.646396 B = 8064.804434 C = 8078.806476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 C 0.155 3.845 4 H 0.081 0.919 5 N -0.663 5.663 6 C 0.111 3.889 7 C -0.105 4.105 8 C 0.183 3.817 9 N -0.607 5.607 10 C -0.266 4.266 11 H 0.066 0.934 12 C -0.047 4.047 13 N -0.934 5.934 14 Si 0.965 3.035 15 H -0.286 1.286 16 H -0.295 1.295 17 H -0.266 1.266 18 C 0.144 3.856 19 C -0.120 4.120 20 C -0.218 4.218 21 S 0.166 5.834 22 C -0.195 4.195 23 C -0.145 4.145 24 C -0.061 4.061 25 Cl -0.061 7.061 26 H 0.063 0.937 27 H 0.040 0.960 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.343 0.657 32 H 0.024 0.976 33 H 0.054 0.946 34 H 0.052 0.948 35 H -0.011 1.011 36 H 0.046 0.954 37 H 0.249 0.751 38 H 0.007 0.993 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.203 0.797 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.698 -19.562 -0.758 23.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.135 4.135 3 C 0.043 3.957 4 H 0.099 0.901 5 N -0.293 5.293 6 C 0.002 3.998 7 C -0.145 4.145 8 C 0.057 3.943 9 N -0.331 5.331 10 C -0.396 4.396 11 H 0.084 0.916 12 C -0.243 4.243 13 N -0.580 5.580 14 Si 0.793 3.207 15 H -0.213 1.213 16 H -0.222 1.222 17 H -0.190 1.190 18 C 0.018 3.982 19 C -0.159 4.159 20 C -0.338 4.338 21 S 0.428 5.572 22 C -0.331 4.331 23 C -0.174 4.174 24 C -0.101 4.101 25 Cl -0.033 7.033 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.163 0.837 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.007 0.993 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.025 0.975 39 H 0.076 0.924 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.220 0.780 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 12.700 -19.962 -1.937 23.738 hybrid contribution 0.285 1.738 1.975 2.646 sum 12.984 -18.224 0.038 22.377 Atomic orbital electron populations 1.21601 0.94702 1.01312 1.01988 1.21460 0.96860 0.92860 1.02353 1.20372 0.84136 0.97254 0.93965 0.90110 1.60739 1.55061 1.07952 1.05590 1.21169 0.95742 0.86522 0.96388 1.21906 0.96979 0.96009 0.99621 1.20480 0.98105 0.89074 0.86668 1.44270 1.18900 1.44116 1.25772 1.19510 1.16290 1.12395 0.91380 0.91598 1.25837 1.03439 0.98716 0.96274 1.70216 1.38849 1.43517 1.05404 0.85284 0.79901 0.77254 0.78234 1.21301 1.22177 1.19012 1.20992 0.87205 0.94036 0.95940 1.22043 1.01696 0.95779 0.96386 1.25657 1.02116 1.08574 0.97470 1.84167 0.95011 1.66237 1.11762 1.25941 1.03923 1.07023 0.96175 1.20100 0.93248 1.04533 0.99555 1.20064 0.93706 1.07679 0.88632 1.98369 1.82752 1.91598 1.30580 0.91801 0.94107 0.92334 0.90892 0.91330 0.83724 0.95800 0.92676 0.92900 0.99317 0.93544 0.94159 0.97536 0.92356 0.90265 0.91617 0.77992 0.82074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.72 71.98 0.70 -2.28 16 2 C -0.10 -1.99 5.61 30.59 0.17 -1.81 16 3 C 0.15 3.78 2.12 44.17 0.09 3.88 16 4 H 0.08 2.35 6.13 -2.39 -0.01 2.34 16 5 N -0.66 -17.51 5.53 -473.18 -2.62 -20.12 16 6 C 0.11 3.71 2.26 44.94 0.10 3.82 16 7 C -0.11 -4.19 5.58 30.67 0.17 -4.02 16 8 C 0.18 9.23 5.30 86.36 0.46 9.69 16 9 N -0.61 -31.37 2.98 -699.10 -2.08 -33.45 16 10 C -0.27 -14.95 9.55 84.03 0.80 -14.14 16 11 H 0.07 3.61 7.89 -2.91 -0.02 3.58 16 12 C -0.05 -2.68 4.85 84.86 0.41 -2.26 16 13 N -0.93 -56.84 11.45 21.65 0.25 -56.60 16 14 Si 0.97 45.66 29.59 68.60 2.03 47.69 16 15 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 16 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 18 C 0.14 6.11 6.51 86.36 0.56 6.67 16 19 C -0.12 -3.99 5.35 30.67 0.16 -3.82 16 20 C -0.22 -4.90 5.10 24.60 0.13 -4.78 16 21 S 0.17 2.80 22.18 -56.49 -1.25 1.54 16 22 C -0.19 -2.88 11.23 66.73 0.75 -2.13 16 23 C -0.14 -2.67 10.07 21.23 0.21 -2.45 16 24 C -0.06 -1.41 6.27 21.24 0.13 -1.27 16 25 Cl -0.06 -1.56 27.93 -2.72 -0.08 -1.63 16 26 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 27 H 0.04 0.95 8.14 -2.39 -0.02 0.94 16 28 H 0.06 1.40 7.85 -2.39 -0.02 1.38 16 29 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.34 7.98 7.01 -89.70 -0.63 7.35 16 32 H 0.02 0.88 7.65 -2.39 -0.02 0.86 16 33 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.05 1.99 7.51 -2.39 -0.02 1.97 16 35 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 36 H 0.05 2.64 6.27 -2.39 -0.01 2.62 16 37 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 38 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.06 2.39 7.94 -2.39 -0.02 2.37 16 40 H 0.08 2.14 8.10 -2.39 -0.02 2.12 16 41 H 0.07 2.25 8.14 -2.38 -0.02 2.24 16 42 H 0.20 1.63 8.06 -2.91 -0.02 1.61 16 43 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -64.80 366.42 1.48 -63.32 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.37 Total: 14.16 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: 4.86 Total: -14.91 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -4.45 Total: -110.17 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -1.25 Total: 1.54 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.08 Total: -1.63 kcal Total: -64.80 1.48 -63.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883187566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.266 kcal (2) G-P(sol) polarization free energy of solvation -64.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds