Wall clock time and date at job start Tue Mar 31 2020 16:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45189 * 1 3 3 C 1.34726 * 117.00287 * 2 1 4 4 O 1.21486 * 119.99405 * 0.02562 * 3 2 1 5 5 C 1.47670 * 120.00328 * 179.97438 * 3 2 1 6 6 C 1.38654 * 119.76905 * 359.97438 * 5 3 2 7 7 C 1.40163 * 119.54707 * 180.02562 * 6 5 3 8 8 C 1.40912 * 121.20219 * 179.97438 * 7 6 5 9 9 C 1.36578 * 118.15783 * 179.22531 * 8 7 6 10 10 C 1.39326 * 119.88992 * 0.78738 * 9 8 7 11 11 N 1.31124 * 121.75342 * 359.46322 * 10 9 8 12 12 C 1.33546 * 121.40623 * 359.97438 * 11 10 9 13 13 C 1.41303 * 120.82598 * 180.02562 * 12 11 10 14 14 N 1.39757 * 120.01071 * 359.97438 * 13 12 11 15 15 C 1.34778 * 119.99617 * 154.77498 * 14 13 12 16 16 O 1.21294 * 120.00285 * 354.48548 * 15 14 13 17 17 C 1.50699 * 119.99797 * 174.47233 * 15 14 13 18 18 H 1.08993 * 109.47752 * 300.00519 * 17 15 14 19 19 C 1.53003 * 109.46880 * 60.00728 * 17 15 14 20 20 C 1.50699 * 109.47202 * 180.02562 * 17 15 14 21 21 H 1.08003 * 120.00021 * 0.02562 * 20 17 15 22 22 C 1.37879 * 120.00267 * 180.02562 * 20 17 15 23 23 N 1.31514 * 119.99670 * 0.02562 * 22 20 17 24 24 Si 1.86797 * 120.00202 * 180.02562 * 22 20 17 25 25 H 1.48498 * 109.47464 * 89.99966 * 24 22 20 26 26 H 1.48507 * 109.46980 * 210.00161 * 24 22 20 27 27 H 1.48500 * 109.47126 * 329.99739 * 24 22 20 28 28 C 1.36385 * 119.97342 * 179.72045 * 13 12 11 29 29 H 1.08994 * 109.47429 * 59.99984 * 1 2 3 30 30 H 1.08998 * 109.47267 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47295 * 299.99594 * 1 2 3 32 32 H 1.08006 * 120.23107 * 359.97438 * 6 5 3 33 33 H 1.08005 * 120.92101 * 359.97438 * 8 7 6 34 34 H 1.07998 * 120.05813 * 180.25224 * 9 8 7 35 35 H 1.08002 * 119.11898 * 179.44067 * 10 9 8 36 36 H 0.96997 * 120.00193 * 334.77704 * 14 13 12 37 37 H 1.09002 * 109.46859 * 299.99754 * 19 17 15 38 38 H 1.09003 * 109.47317 * 179.97438 * 19 17 15 39 39 H 1.09000 * 109.47580 * 59.99880 * 19 17 15 40 40 H 0.96999 * 119.99931 * 179.97438 * 23 22 20 41 41 H 1.08004 * 119.58284 * 180.25130 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4019 2.2192 0.0005 5 6 3.5383 1.2777 0.0006 6 6 4.2888 0.1118 0.0016 7 6 5.6882 0.1906 0.0027 8 6 6.4848 -0.9718 0.0044 9 6 7.8423 -0.8227 -0.0109 10 6 8.4007 0.4537 -0.0109 11 7 7.6558 1.5328 -0.0070 12 6 6.3225 1.4580 -0.0033 13 6 5.5315 2.6289 0.0004 14 7 6.1431 3.8855 0.0007 15 6 5.4873 4.9542 -0.4935 16 8 4.4086 4.8095 -1.0290 17 6 6.0940 6.3290 -0.3806 18 1 6.2437 6.5750 0.6706 19 6 7.4405 6.3534 -1.1068 20 6 5.1674 7.3399 -1.0055 21 1 4.2324 7.0190 -1.4405 22 6 5.5133 8.6746 -1.0219 23 7 6.6520 9.0653 -0.4926 24 14 4.3644 9.9277 -1.7958 25 1 3.4244 10.4397 -0.7665 26 1 5.1595 11.0555 -2.3448 27 1 3.5959 9.2843 -2.8916 28 6 4.1711 2.5322 -0.0016 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 3.7984 -0.8505 0.0025 33 1 6.0342 -1.9533 0.0053 34 1 8.4820 -1.6929 -0.0142 35 1 9.4758 0.5571 -0.0139 36 1 7.0395 3.9886 0.3566 37 1 8.1105 5.6223 -0.6545 38 1 7.8792 7.3479 -1.0256 39 1 7.2909 6.1075 -2.1581 40 1 6.8955 10.0041 -0.5045 41 1 3.5727 3.4313 -0.0029 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886291694.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:28 Heat of formation + Delta-G solvation = -60.227628 kcal Electronic energy + Delta-G solvation = -27189.915278 eV Core-core repulsion = 23228.210225 eV Total energy + Delta-G solvation = -3961.705053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -41.27016 -40.24649 -39.30296 -36.99770 -36.29650 -34.83384 -33.84334 -32.62766 -30.97195 -30.70348 -29.10516 -27.73744 -25.17044 -25.00403 -24.20475 -23.29854 -21.93425 -21.24709 -19.77000 -18.36803 -18.08342 -17.55840 -16.84345 -16.42988 -16.32592 -15.99532 -15.73156 -15.40328 -14.86631 -14.54390 -14.22873 -13.92111 -13.82908 -13.61870 -13.42201 -13.30407 -13.05844 -12.60151 -12.50538 -12.32596 -11.87337 -11.79425 -11.49411 -10.99833 -10.99451 -10.91121 -10.71212 -10.67662 -10.59185 -10.29458 -9.98960 -9.73447 -9.65711 -9.01307 -8.99390 -8.67451 -8.35824 -7.58161 -6.04913 -4.08630 0.04912 0.57495 1.70384 2.17616 2.52719 3.08232 3.34813 3.40249 3.45422 3.49685 3.57191 4.02297 4.11255 4.42302 4.46512 4.58608 4.62047 4.70333 4.93769 4.97465 5.04137 5.06313 5.22929 5.28741 5.34377 5.41043 5.59432 5.69792 5.89774 6.00466 6.13296 6.15324 6.29752 6.36793 6.56497 6.61316 6.79758 6.88189 7.06632 7.41836 7.68808 7.71728 7.74016 7.89860 8.05336 8.29858 8.94475 9.01056 9.57036 11.02699 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.010830 B = 0.003895 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.801921 B = 7186.981843 C = 9644.534933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.506 3.494 4 O -0.487 6.487 5 C -0.084 4.084 6 C -0.071 4.071 7 C -0.095 4.095 8 C -0.051 4.051 9 C -0.177 4.177 10 C 0.133 3.867 11 N -0.469 5.469 12 C 0.124 3.876 13 C 0.191 3.809 14 N -0.667 5.667 15 C 0.515 3.485 16 O -0.514 6.514 17 C 0.033 3.967 18 H 0.059 0.941 19 C -0.135 4.135 20 C -0.504 4.504 21 H 0.076 0.924 22 C 0.060 3.940 23 N -0.895 5.895 24 Si 0.901 3.099 25 H -0.280 1.280 26 H -0.287 1.287 27 H -0.272 1.272 28 C -0.097 4.097 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.064 0.936 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.161 0.839 36 H 0.418 0.582 37 H 0.015 0.985 38 H 0.096 0.904 39 H 0.033 0.967 40 H 0.262 0.738 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.104 -23.972 3.437 24.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.275 6.275 3 C 0.350 3.650 4 O -0.374 6.374 5 C -0.086 4.086 6 C -0.092 4.092 7 C -0.098 4.098 8 C -0.077 4.077 9 C -0.197 4.197 10 C -0.040 4.040 11 N -0.176 5.176 12 C 0.000 4.000 13 C 0.092 3.908 14 N -0.310 5.310 15 C 0.307 3.693 16 O -0.388 6.388 17 C 0.012 3.988 18 H 0.077 0.923 19 C -0.193 4.193 20 C -0.543 4.543 21 H 0.094 0.906 22 C -0.141 4.141 23 N -0.535 5.535 24 Si 0.729 3.271 25 H -0.206 1.206 26 H -0.213 1.213 27 H -0.197 1.197 28 C -0.121 4.121 29 H 0.083 0.917 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.162 0.838 33 H 0.160 0.840 34 H 0.156 0.844 35 H 0.178 0.822 36 H 0.255 0.745 37 H 0.034 0.966 38 H 0.115 0.885 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.499 -22.543 3.069 22.757 hybrid contribution -0.578 -0.149 -0.257 0.650 sum -1.077 -22.693 2.812 22.891 Atomic orbital electron populations 1.23274 0.75990 1.03580 1.02873 1.86513 1.23556 1.32719 1.84735 1.21144 0.89043 0.81510 0.73340 1.90906 1.66479 1.35823 1.44206 1.18881 0.89002 0.94223 1.06499 1.21425 0.91812 0.98250 0.97696 1.18508 0.94268 0.93534 1.03487 1.21465 0.93736 0.97752 0.94745 1.21886 0.95827 0.99231 1.02722 1.22989 1.00336 0.87611 0.93088 1.67880 1.04763 1.33003 1.11986 1.18779 0.89934 0.91478 0.99810 1.17180 0.90823 0.84810 0.97996 1.44079 1.20572 1.05164 1.61235 1.22487 0.85027 0.87044 0.74737 1.90536 1.21725 1.85530 1.40993 1.18926 0.94939 0.85593 0.99310 0.92341 1.21779 0.96133 1.03104 0.98292 1.21124 1.04865 0.90596 1.37672 0.90598 1.24934 0.95417 0.98388 0.95341 1.69866 1.21836 1.16292 1.45460 0.86426 0.80562 0.80443 0.79663 1.20594 1.21266 1.19694 1.21192 0.93410 0.98456 0.98997 0.91704 0.88045 0.91757 0.83796 0.84049 0.84384 0.82167 0.74477 0.96596 0.88525 0.94830 0.92869 0.81062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.27 9.77 -40.56 -0.40 -4.67 16 3 C 0.51 7.78 7.89 34.58 0.27 8.06 16 4 O -0.49 -9.15 16.10 -19.26 -0.31 -9.46 16 5 C -0.08 -1.29 5.87 -105.04 -0.62 -1.90 16 6 C -0.07 -0.86 9.36 -38.71 -0.36 -1.22 16 7 C -0.10 -1.18 5.74 -106.83 -0.61 -1.79 16 8 C -0.05 -0.44 9.89 -39.17 -0.39 -0.83 16 9 C -0.18 -1.39 10.03 -39.78 -0.40 -1.79 16 10 C 0.13 1.32 11.15 -17.45 -0.19 1.12 16 11 N -0.47 -6.53 9.74 -10.80 -0.11 -6.63 16 12 C 0.12 1.87 6.62 -84.63 -0.56 1.31 16 13 C 0.19 3.41 6.43 -83.75 -0.54 2.87 16 14 N -0.67 -12.71 5.19 -9.89 -0.05 -12.76 16 15 C 0.52 11.93 6.94 -10.99 -0.08 11.85 16 16 O -0.51 -13.32 12.62 5.54 0.07 -13.25 16 17 C 0.03 0.83 2.65 -92.92 -0.25 0.58 16 18 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 19 C -0.14 -3.12 8.86 37.16 0.33 -2.79 16 20 C -0.50 -14.30 8.38 -34.44 -0.29 -14.59 16 21 H 0.08 2.27 6.75 -52.48 -0.35 1.92 16 22 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 23 N -0.90 -25.08 11.32 55.43 0.63 -24.46 16 24 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 28 C -0.10 -1.79 8.19 -39.39 -0.32 -2.12 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.14 1.28 7.57 -52.48 -0.40 0.88 16 33 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 34 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 35 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.42 7.16 7.62 -40.82 -0.31 6.85 16 37 H 0.02 0.30 7.45 -51.93 -0.39 -0.09 16 38 H 0.10 2.44 6.07 -51.93 -0.32 2.12 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.17 3.73 5.25 -52.48 -0.28 3.46 16 LS Contribution 353.34 15.07 5.32 5.32 Total: -1.00 -34.02 353.34 -7.45 -41.46 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -4.56 Total: 5.73 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -3.03 Total: 1.73 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.47 Total: -43.85 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.64 Total: -27.38 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.02 -7.45 -41.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886291694.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.765 kcal (2) G-P(sol) polarization free energy of solvation -34.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds