Wall clock time and date at job start Tue Mar 31 2020 16:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45189 * 1 3 3 C 1.34726 * 117.00287 * 2 1 4 4 O 1.21486 * 119.99405 * 0.02562 * 3 2 1 5 5 C 1.47670 * 120.00328 * 179.97438 * 3 2 1 6 6 C 1.38654 * 119.76905 * 359.97438 * 5 3 2 7 7 C 1.40163 * 119.54707 * 180.02562 * 6 5 3 8 8 C 1.40912 * 121.20219 * 179.97438 * 7 6 5 9 9 C 1.36578 * 118.15783 * 179.22531 * 8 7 6 10 10 C 1.39326 * 119.88992 * 0.78738 * 9 8 7 11 11 N 1.31124 * 121.75342 * 359.46322 * 10 9 8 12 12 C 1.33546 * 121.40623 * 359.97438 * 11 10 9 13 13 C 1.41303 * 120.82598 * 180.02562 * 12 11 10 14 14 N 1.39757 * 120.01071 * 359.97438 * 13 12 11 15 15 C 1.34778 * 119.99617 * 154.77498 * 14 13 12 16 16 O 1.21294 * 120.00285 * 354.48548 * 15 14 13 17 17 C 1.50699 * 119.99797 * 174.47233 * 15 14 13 18 18 H 1.08993 * 109.47752 * 300.00519 * 17 15 14 19 19 C 1.53003 * 109.46880 * 60.00728 * 17 15 14 20 20 C 1.50699 * 109.47202 * 180.02562 * 17 15 14 21 21 H 1.08003 * 120.00021 * 0.02562 * 20 17 15 22 22 C 1.37879 * 120.00267 * 180.02562 * 20 17 15 23 23 N 1.31514 * 119.99670 * 0.02562 * 22 20 17 24 24 Si 1.86797 * 120.00202 * 180.02562 * 22 20 17 25 25 H 1.48498 * 109.47464 * 89.99966 * 24 22 20 26 26 H 1.48507 * 109.46980 * 210.00161 * 24 22 20 27 27 H 1.48500 * 109.47126 * 329.99739 * 24 22 20 28 28 C 1.36385 * 119.97342 * 179.72045 * 13 12 11 29 29 H 1.08994 * 109.47429 * 59.99984 * 1 2 3 30 30 H 1.08998 * 109.47267 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47295 * 299.99594 * 1 2 3 32 32 H 1.08006 * 120.23107 * 359.97438 * 6 5 3 33 33 H 1.08005 * 120.92101 * 359.97438 * 8 7 6 34 34 H 1.07998 * 120.05813 * 180.25224 * 9 8 7 35 35 H 1.08002 * 119.11898 * 179.44067 * 10 9 8 36 36 H 0.96997 * 120.00193 * 334.77704 * 14 13 12 37 37 H 1.09002 * 109.46859 * 299.99754 * 19 17 15 38 38 H 1.09003 * 109.47317 * 179.97438 * 19 17 15 39 39 H 1.09000 * 109.47580 * 59.99880 * 19 17 15 40 40 H 0.96999 * 119.99931 * 179.97438 * 23 22 20 41 41 H 1.08004 * 119.58284 * 180.25130 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4019 2.2192 0.0005 5 6 3.5383 1.2777 0.0006 6 6 4.2888 0.1118 0.0016 7 6 5.6882 0.1906 0.0027 8 6 6.4848 -0.9718 0.0044 9 6 7.8423 -0.8227 -0.0109 10 6 8.4007 0.4537 -0.0109 11 7 7.6558 1.5328 -0.0070 12 6 6.3225 1.4580 -0.0033 13 6 5.5315 2.6289 0.0004 14 7 6.1431 3.8855 0.0007 15 6 5.4873 4.9542 -0.4935 16 8 4.4086 4.8095 -1.0290 17 6 6.0940 6.3290 -0.3806 18 1 6.2437 6.5750 0.6706 19 6 7.4405 6.3534 -1.1068 20 6 5.1674 7.3399 -1.0055 21 1 4.2324 7.0190 -1.4405 22 6 5.5133 8.6746 -1.0219 23 7 6.6520 9.0653 -0.4926 24 14 4.3644 9.9277 -1.7958 25 1 3.4244 10.4397 -0.7665 26 1 5.1595 11.0555 -2.3448 27 1 3.5959 9.2843 -2.8916 28 6 4.1711 2.5322 -0.0016 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 3.7984 -0.8505 0.0025 33 1 6.0342 -1.9533 0.0053 34 1 8.4820 -1.6929 -0.0142 35 1 9.4758 0.5571 -0.0139 36 1 7.0395 3.9886 0.3566 37 1 8.1105 5.6223 -0.6545 38 1 7.8792 7.3479 -1.0256 39 1 7.2909 6.1075 -2.1581 40 1 6.8955 10.0041 -0.5045 41 1 3.5727 3.4313 -0.0029 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886291694.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:27 Heat of formation + Delta-G solvation = -83.121929 kcal Electronic energy + Delta-G solvation = -27190.908050 eV Core-core repulsion = 23228.210225 eV Total energy + Delta-G solvation = -3962.697825 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.38203 -41.36033 -40.80104 -38.10610 -37.45263 -36.19412 -35.88818 -33.75483 -32.57754 -31.92210 -30.40065 -28.59015 -27.26609 -25.94649 -25.41262 -24.77664 -23.01940 -22.53506 -21.31223 -19.59090 -19.30327 -18.64407 -18.36951 -17.86634 -17.48248 -17.35318 -17.02089 -16.58917 -16.34036 -16.22129 -15.39733 -15.23329 -15.11691 -14.86219 -14.49637 -14.47348 -14.43298 -13.99173 -13.67948 -13.47556 -13.16208 -13.03474 -12.94376 -12.82471 -12.67909 -12.53524 -12.29602 -12.06107 -12.04708 -11.87408 -11.76541 -11.11745 -10.86655 -10.70117 -10.55816 -10.31799 -9.93676 -8.83578 -8.19760 -6.30663 -0.91840 -0.41498 0.78286 1.00914 1.38226 1.38566 1.50236 1.51971 1.77081 2.06186 2.13039 2.43115 3.01312 3.09955 3.14762 3.50054 3.65671 3.72554 3.97940 4.00340 4.04811 4.21500 4.31231 4.31585 4.46434 4.55720 4.64125 4.66707 4.68781 4.81814 4.87031 4.95283 5.04743 5.09569 5.14587 5.21949 5.24185 5.41265 5.59572 5.68950 5.76907 5.87317 6.11690 6.50626 6.58695 6.76965 6.86827 7.22128 7.38570 8.86505 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.010830 B = 0.003895 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.801921 B = 7186.981843 C = 9644.534933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.345 6.345 3 C 0.511 3.489 4 O -0.539 6.539 5 C -0.121 4.121 6 C -0.022 4.022 7 C -0.112 4.112 8 C -0.036 4.036 9 C -0.163 4.163 10 C 0.141 3.859 11 N -0.514 5.514 12 C 0.118 3.882 13 C 0.153 3.847 14 N -0.655 5.655 15 C 0.517 3.483 16 O -0.555 6.555 17 C 0.030 3.970 18 H 0.047 0.953 19 C -0.120 4.120 20 C -0.533 4.533 21 H 0.048 0.952 22 C 0.023 3.977 23 N -0.908 5.908 24 Si 0.957 3.043 25 H -0.274 1.274 26 H -0.270 1.270 27 H -0.280 1.280 28 C -0.114 4.114 29 H 0.057 0.943 30 H 0.147 0.853 31 H 0.060 0.940 32 H 0.189 0.811 33 H 0.189 0.811 34 H 0.187 0.813 35 H 0.193 0.807 36 H 0.425 0.575 37 H 0.051 0.949 38 H 0.077 0.923 39 H 0.023 0.977 40 H 0.267 0.733 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.933 -28.738 3.587 29.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.261 6.261 3 C 0.357 3.643 4 O -0.430 6.430 5 C -0.123 4.123 6 C -0.041 4.041 7 C -0.115 4.115 8 C -0.062 4.062 9 C -0.182 4.182 10 C -0.030 4.030 11 N -0.223 5.223 12 C -0.005 4.005 13 C 0.056 3.944 14 N -0.298 5.298 15 C 0.308 3.692 16 O -0.432 6.432 17 C 0.009 3.991 18 H 0.065 0.935 19 C -0.178 4.178 20 C -0.571 4.571 21 H 0.066 0.934 22 C -0.176 4.176 23 N -0.547 5.547 24 Si 0.782 3.218 25 H -0.200 1.200 26 H -0.195 1.195 27 H -0.206 1.206 28 C -0.137 4.137 29 H 0.076 0.924 30 H 0.165 0.835 31 H 0.079 0.921 32 H 0.206 0.794 33 H 0.207 0.793 34 H 0.204 0.796 35 H 0.210 0.790 36 H 0.263 0.737 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.042 0.958 40 H 0.076 0.924 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.369 -27.383 3.246 27.608 hybrid contribution -0.990 1.006 -0.251 1.434 sum 0.379 -26.376 2.995 26.549 Atomic orbital electron populations 1.23647 0.74117 1.06312 1.02435 1.86489 1.25275 1.30395 1.83899 1.21263 0.89180 0.81779 0.72071 1.90880 1.67473 1.37651 1.46966 1.18813 0.89239 0.94217 1.09988 1.21897 0.91727 0.98433 0.92067 1.18852 0.94693 0.93922 1.04034 1.22013 0.93851 0.98015 0.92274 1.22416 0.96149 0.99706 0.99975 1.23792 1.01697 0.87830 0.89715 1.67882 1.04329 1.35359 1.14713 1.18751 0.90706 0.91310 0.99738 1.17318 0.90998 0.84969 1.01152 1.43568 1.20365 1.05234 1.60651 1.22020 0.84583 0.87595 0.74965 1.90527 1.23259 1.86213 1.43187 1.18825 0.95440 0.86422 0.98405 0.93503 1.21575 0.95553 1.02925 0.97710 1.21239 1.04844 0.92250 1.38809 0.93370 1.25572 0.96835 0.99636 0.95602 1.69937 1.22466 1.16884 1.45447 0.85579 0.78989 0.78528 0.78689 1.20000 1.19484 1.20571 1.20862 0.93686 0.98439 1.00734 0.92447 0.83537 0.92115 0.79429 0.79339 0.79584 0.79042 0.73682 0.93061 0.90435 0.95790 0.92381 0.85812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.66 16 2 O -0.34 -7.77 9.77 -56.36 -0.55 -8.32 16 3 C 0.51 16.37 7.89 70.31 0.55 16.92 16 4 O -0.54 -22.11 16.10 19.88 0.32 -21.79 16 5 C -0.12 -3.80 5.87 -20.13 -0.12 -3.92 16 6 C -0.02 -0.47 9.36 22.84 0.21 -0.25 16 7 C -0.11 -2.40 5.74 -21.30 -0.12 -2.52 16 8 C -0.04 -0.40 9.89 22.54 0.22 -0.17 16 9 C -0.16 -1.48 10.03 22.14 0.22 -1.26 16 10 C 0.14 2.18 11.15 85.06 0.95 3.12 16 11 N -0.51 -13.39 9.74 -188.10 -1.83 -15.22 16 12 C 0.12 3.49 6.62 40.50 0.27 3.75 16 13 C 0.15 5.79 6.43 38.20 0.25 6.03 16 14 N -0.65 -26.76 5.19 -303.57 -1.58 -28.34 16 15 C 0.52 26.04 6.94 87.66 0.61 26.65 16 16 O -0.55 -31.80 12.62 -3.07 -0.04 -31.83 16 17 C 0.03 1.61 2.65 -12.29 -0.03 1.57 16 18 H 0.05 2.56 8.14 -2.39 -0.02 2.54 16 19 C -0.12 -5.73 8.86 71.98 0.64 -5.09 16 20 C -0.53 -32.19 8.38 25.60 0.21 -31.98 16 21 H 0.05 3.12 6.75 -2.91 -0.02 3.10 16 22 C 0.02 1.33 5.30 84.66 0.45 1.78 16 23 N -0.91 -52.08 11.32 21.45 0.24 -51.84 16 24 Si 0.96 46.51 29.54 68.60 2.03 48.54 16 25 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 26 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 27 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16 28 C -0.11 -4.59 8.19 22.39 0.18 -4.40 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.15 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.19 2.28 7.57 -2.91 -0.02 2.26 16 33 H 0.19 0.37 8.06 -2.91 -0.02 0.35 16 34 H 0.19 0.03 8.06 -2.91 -0.02 0.01 16 35 H 0.19 1.61 8.06 -2.91 -0.02 1.58 16 36 H 0.42 15.36 7.62 -92.71 -0.71 14.66 16 37 H 0.05 2.03 7.45 -2.39 -0.02 2.01 16 38 H 0.08 4.02 6.07 -2.39 -0.01 4.01 16 39 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 41 H 0.12 6.17 5.25 -2.91 -0.02 6.16 16 Total: -1.00 -84.16 353.34 4.67 -79.49 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.39 Total: 17.42 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 5.69 Total: 11.89 kcal Atomic # 7 Polarization: -92.24 SS G_CDS: -3.17 Total: -95.40 kcal Atomic # 8 Polarization: -61.67 SS G_CDS: -0.27 Total: -61.94 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -84.16 4.67 -79.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886291694.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.629 kcal (2) G-P(sol) polarization free energy of solvation -84.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds