Wall clock time and date at job start Tue Mar 31 2020 16:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47474 * 2 1 4 4 C 1.53006 * 109.46991 * 240.00352 * 2 1 3 5 5 C 1.50698 * 109.47209 * 175.00185 * 4 2 1 6 6 C 1.38385 * 120.00483 * 124.72373 * 5 4 2 7 7 N 1.32120 * 119.99901 * 179.78177 * 6 5 4 8 8 C 1.32152 * 120.00094 * 0.48860 * 7 6 5 9 9 C 1.38340 * 120.00091 * 359.74258 * 8 7 6 10 10 N 1.32130 * 119.99808 * 304.99603 * 5 4 2 11 11 O 1.45197 * 109.47095 * 120.00305 * 2 1 3 12 12 C 1.34754 * 117.00080 * 269.99341 * 11 2 1 13 13 O 1.21510 * 120.00161 * 0.02562 * 12 11 2 14 14 C 1.47395 * 120.00207 * 180.02562 * 12 11 2 15 15 C 1.39727 * 120.20148 * 359.97438 * 14 12 11 16 16 C 1.37810 * 119.91391 * 179.97438 * 15 14 12 17 17 C 1.38587 * 120.33169 * 0.03158 * 16 15 14 18 18 C 1.38025 * 120.41350 * 359.97438 * 17 16 15 19 19 C 1.38827 * 120.07772 * 359.97438 * 18 17 16 20 20 O 1.35509 * 120.16816 * 180.02562 * 19 18 17 21 21 C 1.34813 * 116.99680 * 354.39701 * 20 19 18 22 22 H 1.07997 * 120.00126 * 5.05232 * 21 20 19 23 23 C 1.38700 * 120.00149 * 185.05451 * 21 20 19 24 24 N 1.31517 * 120.00213 * 180.02562 * 23 21 20 25 25 Si 1.86810 * 119.99938 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47235 * 89.99949 * 25 23 21 27 27 H 1.48497 * 109.47074 * 210.00106 * 25 23 21 28 28 H 1.48506 * 109.46722 * 330.00206 * 25 23 21 29 29 H 1.08994 * 109.47373 * 59.99556 * 1 2 3 30 30 H 1.08994 * 109.47037 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47016 * 299.99792 * 1 2 3 32 32 H 1.09003 * 109.46549 * 294.99984 * 4 2 1 33 33 H 1.08993 * 109.47017 * 54.99716 * 4 2 1 34 34 H 1.08000 * 119.99774 * 0.02562 * 6 5 4 35 35 H 1.08005 * 120.00218 * 179.71302 * 8 7 6 36 36 H 1.08008 * 119.99988 * 179.97438 * 9 8 7 37 37 H 1.08001 * 120.04451 * 0.02562 * 15 14 12 38 38 H 1.08002 * 119.83561 * 180.02562 * 16 15 14 39 39 H 1.07998 * 119.79609 * 180.27039 * 17 16 15 40 40 H 1.07998 * 119.96117 * 179.97438 * 18 17 16 41 41 H 0.97005 * 119.99910 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 6 4.3133 -1.7599 -1.4077 7 7 5.6298 -1.6664 -1.4677 8 6 6.2105 -0.4800 -1.4274 9 6 5.4396 0.6644 -1.3278 10 7 4.1225 0.5713 -1.2725 11 8 2.0140 -0.6845 1.1855 12 6 2.2180 0.0668 2.2853 13 8 1.9971 1.2613 2.2547 14 6 2.7092 -0.5602 3.5256 15 6 2.9641 -1.9334 3.5657 16 6 3.4238 -2.5134 4.7282 17 6 3.6343 -1.7414 5.8598 18 6 3.3868 -0.3838 5.8354 19 6 2.9245 0.2184 4.6731 20 8 2.6814 1.5513 4.6469 21 6 2.7969 2.2174 5.8132 22 1 3.1510 1.7045 6.6953 23 6 2.4611 3.5614 5.8805 24 7 2.5742 4.2114 7.0182 25 14 1.8493 4.4488 4.3547 26 1 0.3704 4.3385 4.2774 27 1 2.2358 5.8808 4.4265 28 1 2.4554 3.8323 3.1472 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7516 -1.7715 -1.2056 33 1 1.6053 -0.2617 -2.1370 34 1 3.8389 -2.7297 -1.4366 35 1 7.2869 -0.4038 -1.4718 36 1 5.9142 1.6341 -1.2944 37 1 2.8020 -2.5394 2.6865 38 1 3.6208 -3.5749 4.7577 39 1 3.9989 -2.2042 6.7649 40 1 3.5531 0.2108 6.7215 41 1 2.3389 5.1513 7.0653 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893414554.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:53 Heat of formation + Delta-G solvation = -38.225383 kcal Electronic energy + Delta-G solvation = -27693.581985 eV Core-core repulsion = 23732.831020 eV Total energy + Delta-G solvation = -3960.750965 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.22158 -40.06896 -38.95168 -36.67056 -36.28547 -34.63728 -33.53060 -32.53817 -31.48510 -30.55485 -29.26881 -27.55157 -25.47551 -24.78676 -24.14141 -23.17917 -21.83674 -21.01017 -20.16493 -18.04420 -17.88372 -17.63538 -17.11741 -16.82168 -16.28881 -15.89260 -15.43527 -14.99331 -14.81077 -14.42526 -14.12279 -14.05208 -13.79590 -13.74375 -13.38011 -13.12146 -12.92438 -12.46230 -12.41570 -12.23597 -12.13907 -11.92814 -11.67185 -11.47528 -11.31288 -11.24785 -10.95707 -10.81697 -10.75705 -10.27908 -10.11802 -9.84991 -9.42718 -9.30958 -9.15893 -8.96167 -8.46472 -7.56951 -6.54793 -4.20062 0.64928 1.02948 1.43829 2.15333 3.08188 3.24849 3.28364 3.32817 3.55260 3.59335 3.88806 4.14773 4.28096 4.30015 4.41675 4.55379 4.65055 4.78207 4.98014 5.01283 5.02917 5.19013 5.23910 5.28624 5.38260 5.43645 5.47347 5.53468 5.59904 5.75571 5.90420 6.00060 6.03457 6.15617 6.23935 6.35640 6.52054 6.81105 6.85482 7.06415 7.10487 7.14934 7.42549 7.62330 7.66155 7.86722 8.51520 8.79842 9.40930 10.49945 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.011052 B = 0.004370 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.882866 B = 6406.053434 C = 7217.905318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.090 3.910 3 H 0.095 0.905 4 C -0.062 4.062 5 C 0.087 3.913 6 C 0.057 3.943 7 N -0.437 5.437 8 C 0.040 3.960 9 C 0.058 3.942 10 N -0.434 5.434 11 O -0.359 6.359 12 C 0.505 3.495 13 O -0.490 6.490 14 C -0.216 4.216 15 C -0.018 4.018 16 C -0.225 4.225 17 C -0.043 4.043 18 C -0.229 4.229 19 C 0.203 3.797 20 O -0.166 6.166 21 C -0.397 4.397 22 H 0.110 0.890 23 C 0.073 3.927 24 N -0.865 5.865 25 Si 0.899 3.101 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.239 1.239 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.168 0.832 35 H 0.169 0.831 36 H 0.169 0.831 37 H 0.125 0.875 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.141 0.859 41 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.453 -11.827 -15.819 19.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.035 3.965 3 H 0.113 0.887 4 C -0.100 4.100 5 C -0.053 4.053 6 C -0.103 4.103 7 N -0.151 5.151 8 C -0.120 4.120 9 C -0.102 4.102 10 N -0.150 5.150 11 O -0.278 6.278 12 C 0.351 3.649 13 O -0.377 6.377 14 C -0.219 4.219 15 C -0.037 4.037 16 C -0.244 4.244 17 C -0.062 4.062 18 C -0.248 4.248 19 C 0.145 3.855 20 O -0.066 6.066 21 C -0.471 4.471 22 H 0.127 0.873 23 C -0.133 4.133 24 N -0.500 5.500 25 Si 0.723 3.277 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.162 1.162 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.123 0.877 34 H 0.186 0.814 35 H 0.186 0.814 36 H 0.187 0.813 37 H 0.143 0.857 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.158 0.842 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.297 -11.028 -15.917 19.408 hybrid contribution -0.140 0.631 -0.243 0.691 sum 1.157 -10.397 -16.160 19.250 Atomic orbital electron populations 1.22186 0.94148 1.02865 1.03342 1.22507 0.94121 0.98029 0.81859 0.88654 1.20692 0.88351 1.03179 0.97797 1.22175 0.98043 0.89805 0.95293 1.23581 0.90119 0.99773 0.96838 1.68427 1.11283 1.27085 1.08318 1.23737 1.02047 0.88903 0.97264 1.23789 0.90087 1.00693 0.95643 1.68248 1.11695 1.26707 1.08318 1.86554 1.78380 1.42501 1.20409 1.21031 0.75375 0.85299 0.83172 1.90902 1.47878 1.15450 1.83520 1.18079 1.19131 0.93703 0.90947 1.20949 0.93029 0.92145 0.97560 1.20614 1.10470 0.99438 0.93917 1.21033 0.94495 0.93238 0.97426 1.21237 1.08750 0.95575 0.99205 1.18993 0.90887 0.83766 0.91867 1.83755 1.73470 1.14776 1.34571 1.20940 1.45721 0.93955 0.86520 0.87261 1.24502 0.95155 0.95464 0.98173 1.69633 1.44415 1.11044 1.24955 0.86225 0.80055 0.77683 0.83725 1.19799 1.21029 1.16222 0.90956 0.91591 0.91410 0.88599 0.87735 0.81439 0.81412 0.81348 0.85722 0.86735 0.86604 0.84181 0.90691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 9.55 37.16 0.35 -1.66 16 2 C 0.09 1.28 2.49 -26.73 -0.07 1.21 16 3 H 0.10 1.64 6.84 -51.93 -0.35 1.28 16 4 C -0.06 -0.63 5.35 -27.88 -0.15 -0.78 16 5 C 0.09 1.07 5.95 -82.41 -0.49 0.58 16 6 C 0.06 0.64 10.85 -17.37 -0.19 0.45 16 7 N -0.44 -5.34 10.50 -13.06 -0.14 -5.48 16 8 C 0.04 0.43 11.22 -17.38 -0.20 0.23 16 9 C 0.06 0.67 11.22 -17.38 -0.20 0.48 16 10 N -0.43 -6.08 9.96 -9.29 -0.09 -6.17 16 11 O -0.36 -6.12 8.89 -40.64 -0.36 -6.48 16 12 C 0.51 10.77 7.86 34.46 0.27 11.04 16 13 O -0.49 -12.17 14.43 -26.59 -0.38 -12.56 16 14 C -0.22 -4.59 5.89 -104.83 -0.62 -5.21 16 15 C -0.02 -0.32 9.61 -39.18 -0.38 -0.70 16 16 C -0.23 -3.62 10.02 -39.61 -0.40 -4.02 16 17 C -0.04 -0.75 10.03 -39.53 -0.40 -1.14 16 18 C -0.23 -4.82 9.16 -39.44 -0.36 -5.18 16 19 C 0.20 4.82 6.66 -38.58 -0.26 4.57 16 20 O -0.17 -4.54 6.67 -21.02 -0.14 -4.68 16 21 C -0.40 -11.24 9.95 30.90 0.31 -10.93 16 22 H 0.11 3.08 5.44 -52.49 -0.29 2.79 16 23 C 0.07 2.08 5.49 -17.52 -0.10 1.99 16 24 N -0.87 -24.84 13.96 55.48 0.77 -24.06 16 25 Si 0.90 22.93 28.62 -169.99 -4.86 18.06 16 26 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.24 -6.45 7.11 56.52 0.40 -6.05 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.10 0.74 7.89 -51.93 -0.41 0.33 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.17 1.37 7.95 -52.49 -0.42 0.95 16 35 H 0.17 1.23 8.06 -52.48 -0.42 0.81 16 36 H 0.17 1.51 8.06 -52.48 -0.42 1.08 16 37 H 0.12 1.84 7.61 -52.49 -0.40 1.44 16 38 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 39 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.14 3.03 5.64 -52.49 -0.30 2.74 16 41 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 360.13 15.07 5.43 5.43 Total: -1.00 -34.40 360.13 -7.31 -41.71 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -4.68 Total: 3.30 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -2.85 Total: -9.06 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.55 Total: -35.72 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.89 Total: -23.72 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.86 Total: 18.06 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.40 -7.31 -41.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893414554.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.488 kcal (2) G-P(sol) polarization free energy of solvation -34.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds