Wall clock time and date at job start Tue Mar 31 2020 16:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47474 * 2 1 4 4 C 1.53006 * 109.46991 * 240.00352 * 2 1 3 5 5 C 1.50698 * 109.47209 * 175.00185 * 4 2 1 6 6 C 1.38385 * 120.00483 * 124.72373 * 5 4 2 7 7 N 1.32120 * 119.99901 * 179.78177 * 6 5 4 8 8 C 1.32152 * 120.00094 * 0.48860 * 7 6 5 9 9 C 1.38340 * 120.00091 * 359.74258 * 8 7 6 10 10 N 1.32130 * 119.99808 * 304.99603 * 5 4 2 11 11 O 1.45197 * 109.47095 * 120.00305 * 2 1 3 12 12 C 1.34754 * 117.00080 * 269.99341 * 11 2 1 13 13 O 1.21510 * 120.00161 * 0.02562 * 12 11 2 14 14 C 1.47395 * 120.00207 * 180.02562 * 12 11 2 15 15 C 1.39727 * 120.20148 * 359.97438 * 14 12 11 16 16 C 1.37810 * 119.91391 * 179.97438 * 15 14 12 17 17 C 1.38587 * 120.33169 * 0.03158 * 16 15 14 18 18 C 1.38025 * 120.41350 * 359.97438 * 17 16 15 19 19 C 1.38827 * 120.07772 * 359.97438 * 18 17 16 20 20 O 1.35509 * 120.16816 * 180.02562 * 19 18 17 21 21 C 1.34813 * 116.99680 * 354.39701 * 20 19 18 22 22 H 1.07997 * 120.00126 * 5.05232 * 21 20 19 23 23 C 1.38700 * 120.00149 * 185.05451 * 21 20 19 24 24 N 1.31517 * 120.00213 * 180.02562 * 23 21 20 25 25 Si 1.86810 * 119.99938 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47235 * 89.99949 * 25 23 21 27 27 H 1.48497 * 109.47074 * 210.00106 * 25 23 21 28 28 H 1.48506 * 109.46722 * 330.00206 * 25 23 21 29 29 H 1.08994 * 109.47373 * 59.99556 * 1 2 3 30 30 H 1.08994 * 109.47037 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47016 * 299.99792 * 1 2 3 32 32 H 1.09003 * 109.46549 * 294.99984 * 4 2 1 33 33 H 1.08993 * 109.47017 * 54.99716 * 4 2 1 34 34 H 1.08000 * 119.99774 * 0.02562 * 6 5 4 35 35 H 1.08005 * 120.00218 * 179.71302 * 8 7 6 36 36 H 1.08008 * 119.99988 * 179.97438 * 9 8 7 37 37 H 1.08001 * 120.04451 * 0.02562 * 15 14 12 38 38 H 1.08002 * 119.83561 * 180.02562 * 16 15 14 39 39 H 1.07998 * 119.79609 * 180.27039 * 17 16 15 40 40 H 1.07998 * 119.96117 * 179.97438 * 18 17 16 41 41 H 0.97005 * 119.99910 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 6 4.3133 -1.7599 -1.4077 7 7 5.6298 -1.6664 -1.4677 8 6 6.2105 -0.4800 -1.4274 9 6 5.4396 0.6644 -1.3278 10 7 4.1225 0.5713 -1.2725 11 8 2.0140 -0.6845 1.1855 12 6 2.2180 0.0668 2.2853 13 8 1.9971 1.2613 2.2547 14 6 2.7092 -0.5602 3.5256 15 6 2.9641 -1.9334 3.5657 16 6 3.4238 -2.5134 4.7282 17 6 3.6343 -1.7414 5.8598 18 6 3.3868 -0.3838 5.8354 19 6 2.9245 0.2184 4.6731 20 8 2.6814 1.5513 4.6469 21 6 2.7969 2.2174 5.8132 22 1 3.1510 1.7045 6.6953 23 6 2.4611 3.5614 5.8805 24 7 2.5742 4.2114 7.0182 25 14 1.8493 4.4488 4.3547 26 1 0.3704 4.3385 4.2774 27 1 2.2358 5.8808 4.4265 28 1 2.4554 3.8323 3.1472 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7516 -1.7715 -1.2056 33 1 1.6053 -0.2617 -2.1370 34 1 3.8389 -2.7297 -1.4366 35 1 7.2869 -0.4038 -1.4718 36 1 5.9142 1.6341 -1.2944 37 1 2.8020 -2.5394 2.6865 38 1 3.6208 -3.5749 4.7577 39 1 3.9989 -2.2042 6.7649 40 1 3.5531 0.2108 6.7215 41 1 2.3389 5.1513 7.0653 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893414554.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:52 Heat of formation + Delta-G solvation = -60.139828 kcal Electronic energy + Delta-G solvation = -27694.532266 eV Core-core repulsion = 23732.831020 eV Total energy + Delta-G solvation = -3961.701246 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.12079 -41.62832 -40.57549 -38.32669 -37.75244 -35.65747 -34.59120 -34.52620 -32.62798 -31.91829 -30.89427 -28.41820 -27.43879 -25.75042 -25.51740 -24.20482 -23.35870 -22.38095 -21.54881 -19.94244 -19.50375 -18.72478 -18.33013 -17.94506 -17.50098 -17.16162 -16.82549 -16.54463 -16.07437 -15.91572 -15.69331 -15.52663 -15.45848 -14.96614 -14.62980 -14.30773 -14.27106 -14.09145 -13.97014 -13.36099 -13.22848 -13.16459 -12.95957 -12.90375 -12.65953 -12.58254 -12.47329 -12.20813 -12.09177 -11.95445 -11.71034 -11.55297 -11.17186 -11.02430 -10.17627 -10.02704 -10.00891 -9.26066 -8.63598 -6.33042 -0.18644 -0.13866 0.15103 0.57684 1.20300 1.24886 1.52085 1.67059 1.69410 2.23556 2.68151 2.69955 2.89446 3.05282 3.09918 3.37195 3.45354 3.73472 3.79295 3.86499 3.99377 4.12771 4.17039 4.18896 4.27307 4.42400 4.43298 4.49058 4.57642 4.67654 4.71319 4.74198 4.88597 4.91471 5.03833 5.16165 5.23237 5.38735 5.43200 5.49459 5.56247 5.65402 5.77690 6.07674 6.31107 6.71889 6.81349 6.91942 7.48063 8.46461 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.011052 B = 0.004370 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.882866 B = 6406.053434 C = 7217.905318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.083 3.917 3 H 0.056 0.944 4 C -0.052 4.052 5 C 0.069 3.931 6 C 0.058 3.942 7 N -0.456 5.456 8 C 0.041 3.959 9 C 0.040 3.960 10 N -0.473 5.473 11 O -0.344 6.344 12 C 0.505 3.495 13 O -0.535 6.535 14 C -0.228 4.228 15 C -0.013 4.013 16 C -0.193 4.193 17 C -0.030 4.030 18 C -0.250 4.250 19 C 0.168 3.832 20 O -0.209 6.209 21 C -0.405 4.405 22 H 0.096 0.904 23 C 0.031 3.969 24 N -0.905 5.905 25 Si 0.951 3.049 26 H -0.274 1.274 27 H -0.263 1.263 28 H -0.270 1.270 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.032 0.968 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.201 0.799 35 H 0.198 0.802 36 H 0.184 0.816 37 H 0.162 0.838 38 H 0.169 0.831 39 H 0.158 0.842 40 H 0.123 0.877 41 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.653 -16.373 -17.720 24.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.028 3.972 3 H 0.075 0.925 4 C -0.090 4.090 5 C -0.071 4.071 6 C -0.102 4.102 7 N -0.171 5.171 8 C -0.117 4.117 9 C -0.120 4.120 10 N -0.189 5.189 11 O -0.262 6.262 12 C 0.353 3.647 13 O -0.426 6.426 14 C -0.230 4.230 15 C -0.031 4.031 16 C -0.211 4.211 17 C -0.048 4.048 18 C -0.269 4.269 19 C 0.114 3.886 20 O -0.113 6.113 21 C -0.481 4.481 22 H 0.114 0.886 23 C -0.170 4.170 24 N -0.544 5.544 25 Si 0.775 3.225 26 H -0.199 1.199 27 H -0.187 1.187 28 H -0.194 1.194 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.051 0.949 32 H 0.150 0.850 33 H 0.146 0.854 34 H 0.218 0.782 35 H 0.215 0.785 36 H 0.201 0.799 37 H 0.179 0.821 38 H 0.187 0.813 39 H 0.176 0.824 40 H 0.140 0.860 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.506 -15.633 -17.840 23.768 hybrid contribution -0.122 1.560 0.183 1.575 sum 1.384 -14.073 -17.657 22.621 Atomic orbital electron populations 1.22183 0.92384 1.04472 1.02966 1.22835 0.95587 0.96696 0.82110 0.92529 1.20805 0.87203 1.04958 0.96050 1.22549 0.99117 0.89718 0.95761 1.24086 0.89885 1.00713 0.95535 1.68501 1.11930 1.27561 1.09075 1.24196 1.03402 0.88243 0.95895 1.24159 0.89813 1.02040 0.95964 1.68221 1.13001 1.28298 1.09414 1.86509 1.77849 1.41693 1.20168 1.21207 0.74431 0.84858 0.84225 1.90893 1.49716 1.17563 1.84423 1.18534 1.18862 0.95427 0.90223 1.21434 0.91662 0.90303 0.99685 1.21286 1.05969 1.01754 0.92081 1.21547 0.92200 0.91291 0.99725 1.21322 1.10043 0.97615 0.97922 1.19697 0.91582 0.83311 0.93962 1.83746 1.77134 1.16629 1.33770 1.20912 1.45869 0.94336 0.86947 0.88626 1.25005 0.96002 0.96123 0.99903 1.69669 1.47309 1.11590 1.25850 0.85492 0.79150 0.77695 0.80206 1.19912 1.18711 1.19442 0.88260 0.88873 0.94918 0.85009 0.85381 0.78238 0.78498 0.79900 0.82075 0.81346 0.82414 0.85964 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 9.55 71.98 0.69 -2.96 16 2 C 0.08 2.26 2.49 30.60 0.08 2.34 16 3 H 0.06 2.02 6.84 -2.39 -0.02 2.00 16 4 C -0.05 -0.91 5.35 29.85 0.16 -0.75 16 5 C 0.07 1.56 5.95 42.55 0.25 1.81 16 6 C 0.06 1.12 10.85 84.68 0.92 2.04 16 7 N -0.46 -10.06 10.50 -195.23 -2.05 -12.11 16 8 C 0.04 0.82 11.22 84.67 0.95 1.77 16 9 C 0.04 0.91 11.22 84.67 0.95 1.86 16 10 N -0.47 -13.16 9.96 -183.29 -1.83 -14.98 16 11 O -0.34 -11.23 8.89 -56.65 -0.50 -11.74 16 12 C 0.51 21.85 7.86 70.23 0.55 22.40 16 13 O -0.54 -28.11 14.43 26.80 0.39 -27.72 16 14 C -0.23 -9.55 5.89 -20.00 -0.12 -9.67 16 15 C -0.01 -0.39 9.61 22.53 0.22 -0.18 16 16 C -0.19 -5.03 10.02 22.25 0.22 -4.80 16 17 C -0.03 -0.90 10.03 22.30 0.22 -0.68 16 18 C -0.25 -10.58 9.16 22.36 0.20 -10.37 16 19 C 0.17 8.23 6.66 22.92 0.15 8.38 16 20 O -0.21 -12.20 6.67 0.98 0.01 -12.19 16 21 C -0.40 -24.55 9.95 67.93 0.68 -23.87 16 22 H 0.10 5.82 5.44 -2.91 -0.02 5.80 16 23 C 0.03 1.86 5.49 84.85 0.47 2.33 16 24 N -0.91 -54.72 13.96 21.62 0.30 -54.41 16 25 Si 0.95 50.49 28.62 68.60 1.96 52.45 16 26 H -0.27 -14.28 7.11 99.48 0.71 -13.57 16 27 H -0.26 -12.72 7.11 99.48 0.71 -12.01 16 28 H -0.27 -15.52 7.11 99.48 0.71 -14.81 16 29 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.13 1.34 7.89 -2.39 -0.02 1.32 16 33 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.20 2.34 7.95 -2.91 -0.02 2.32 16 35 H 0.20 2.48 8.06 -2.91 -0.02 2.46 16 36 H 0.18 3.32 8.06 -2.91 -0.02 3.30 16 37 H 0.16 3.77 7.61 -2.91 -0.02 3.75 16 38 H 0.17 2.82 8.06 -2.91 -0.02 2.79 16 39 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 40 H 0.12 5.57 5.64 -2.91 -0.02 5.55 16 41 H 0.29 15.98 8.31 -92.70 -0.77 15.21 16 Total: -1.00 -83.62 360.13 5.94 -77.68 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 1.07 Total: 13.39 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 6.59 Total: -10.36 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -3.57 Total: -81.51 kcal Atomic # 8 Polarization: -51.54 SS G_CDS: -0.11 Total: -51.66 kcal Atomic # 14 Polarization: 50.49 SS G_CDS: 1.96 Total: 52.45 kcal Total: -83.62 5.94 -77.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893414554.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.539 kcal (2) G-P(sol) polarization free energy of solvation -83.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds