Wall clock time and date at job start Tue Mar 31 2020 16:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46942 * 2 1 4 4 C 1.53000 * 109.46958 * 119.99369 * 2 1 3 5 5 C 1.50702 * 109.47129 * 185.00185 * 4 2 1 6 6 C 1.38386 * 119.99999 * 124.72609 * 5 4 2 7 7 N 1.32129 * 119.99643 * 179.78228 * 6 5 4 8 8 C 1.32156 * 119.99743 * 0.49674 * 7 6 5 9 9 C 1.38343 * 120.00238 * 359.73250 * 8 7 6 10 10 N 1.32126 * 119.99857 * 305.00340 * 5 4 2 11 11 O 1.45197 * 109.47418 * 239.99765 * 2 1 3 12 12 C 1.34759 * 116.99732 * 90.00117 * 11 2 1 13 13 O 1.21510 * 120.00521 * 359.97438 * 12 11 2 14 14 C 1.47395 * 119.99859 * 180.02562 * 12 11 2 15 15 C 1.39737 * 120.20536 * 359.97438 * 14 12 11 16 16 C 1.37797 * 119.91625 * 180.02562 * 15 14 12 17 17 C 1.38587 * 120.33334 * 359.97438 * 16 15 14 18 18 C 1.38025 * 120.41352 * 0.02562 * 17 16 15 19 19 C 1.38827 * 120.07760 * 359.97438 * 18 17 16 20 20 O 1.35508 * 120.16807 * 179.97438 * 19 18 17 21 21 C 1.34815 * 116.99688 * 354.39487 * 20 19 18 22 22 H 1.07997 * 120.00113 * 5.05825 * 21 20 19 23 23 C 1.38700 * 119.99809 * 185.04796 * 21 20 19 24 24 N 1.31520 * 119.99867 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 120.00407 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47304 * 89.99382 * 25 23 21 27 27 H 1.48496 * 109.47594 * 209.99745 * 25 23 21 28 28 H 1.48505 * 109.46997 * 329.99707 * 25 23 21 29 29 H 1.09000 * 109.46942 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47405 * 300.00081 * 1 2 3 31 31 H 1.09003 * 109.47164 * 60.00538 * 1 2 3 32 32 H 1.08990 * 109.47644 * 305.00310 * 4 2 1 33 33 H 1.09001 * 109.46983 * 65.00464 * 4 2 1 34 34 H 1.07993 * 120.00082 * 0.02675 * 6 5 4 35 35 H 1.08006 * 119.99709 * 179.71854 * 8 7 6 36 36 H 1.08003 * 119.99660 * 180.02562 * 9 8 7 37 37 H 1.07996 * 120.03589 * 0.04186 * 15 14 12 38 38 H 1.08002 * 119.83392 * 180.02562 * 16 15 14 39 39 H 1.07998 * 119.79611 * 180.27658 * 17 16 15 40 40 H 1.07998 * 119.96128 * 180.02562 * 18 17 16 41 41 H 0.97002 * 119.99979 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 3.5419 -0.6148 1.3129 6 6 4.1513 -0.0887 2.4385 7 7 5.4683 0.0005 2.4958 8 6 6.2031 -0.4035 1.4743 9 6 5.5936 -0.9249 0.3472 10 7 4.2765 -1.0187 0.2917 11 8 2.0141 -0.6845 -1.1855 12 6 2.2180 0.0670 -2.2853 13 8 1.9970 1.2614 -2.2548 14 6 2.7082 -0.5602 -3.5259 15 6 2.9633 -1.9335 -3.5661 16 6 3.4219 -2.5136 -4.7288 17 6 3.6315 -1.7417 -5.8606 18 6 3.3840 -0.3841 -5.8362 19 6 2.9216 0.2181 -4.6739 20 8 2.6785 1.5509 -4.6478 21 6 3.0152 2.2561 -5.7463 22 1 3.3811 1.7453 -6.6247 23 6 2.8915 3.6375 -5.7485 24 7 3.2195 4.3255 -6.8203 25 14 2.2591 4.5211 -4.2290 26 1 3.4024 4.8733 -3.3493 27 1 1.5482 5.7596 -4.6364 28 1 1.3237 3.6328 -3.4933 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 1.6054 -0.2616 2.1370 33 1 1.7516 -1.7714 1.2057 34 1 3.5506 0.2452 3.2715 35 1 7.2794 -0.3263 1.5194 36 1 6.1941 -1.2555 -0.4874 37 1 2.8009 -2.5394 -2.6870 38 1 3.6183 -3.5752 -4.7585 39 1 3.9869 -2.2061 -6.7686 40 1 3.5495 0.2104 -6.7226 41 1 3.1334 5.2916 -6.8217 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893414555.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:56 Heat of formation + Delta-G solvation = -35.405165 kcal Electronic energy + Delta-G solvation = -27779.326771 eV Core-core repulsion = 23818.698100 eV Total energy + Delta-G solvation = -3960.628671 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.19810 -39.99089 -38.88892 -36.61824 -36.23192 -34.53128 -33.55616 -32.50710 -31.45002 -30.49717 -29.21457 -27.53821 -25.43877 -24.78235 -24.02556 -23.14872 -21.77775 -20.97690 -20.13243 -18.00135 -17.85355 -17.52450 -17.09164 -16.86978 -16.28054 -15.91256 -15.30497 -14.88971 -14.73176 -14.39824 -14.12001 -13.91561 -13.78868 -13.72077 -13.35192 -13.08605 -12.84211 -12.47310 -12.40438 -12.19567 -12.10374 -11.90437 -11.57812 -11.43058 -11.28976 -11.24100 -10.92816 -10.77869 -10.73723 -10.20860 -10.10816 -9.79624 -9.36092 -9.32390 -9.07551 -8.93883 -8.39882 -7.51963 -6.52280 -4.17276 0.64299 1.06352 1.50769 2.21146 3.16322 3.26129 3.31749 3.36874 3.59240 3.59480 3.90085 4.14214 4.29004 4.29246 4.47474 4.56028 4.70343 4.79222 4.98665 5.00512 5.04531 5.17350 5.24785 5.32376 5.35044 5.47462 5.50822 5.55574 5.62579 5.79149 5.89174 6.03853 6.08113 6.14486 6.24728 6.42053 6.58805 6.87822 6.92509 7.13180 7.16059 7.18496 7.47794 7.65975 7.71083 7.90082 8.60923 8.82918 9.45016 10.52791 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.010790 B = 0.004425 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.433132 B = 6326.272793 C = 7086.751140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.093 3.907 3 H 0.081 0.919 4 C -0.063 4.063 5 C 0.080 3.920 6 C 0.047 3.953 7 N -0.440 5.440 8 C 0.039 3.961 9 C 0.058 3.942 10 N -0.410 5.410 11 O -0.336 6.336 12 C 0.508 3.492 13 O -0.501 6.501 14 C -0.211 4.211 15 C -0.012 4.012 16 C -0.227 4.227 17 C -0.044 4.044 18 C -0.231 4.231 19 C 0.202 3.798 20 O -0.168 6.168 21 C -0.396 4.396 22 H 0.110 0.890 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.898 3.102 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.240 1.240 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.166 0.834 35 H 0.168 0.832 36 H 0.170 0.830 37 H 0.128 0.872 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.139 0.861 41 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.176 -12.562 15.346 19.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.037 3.963 3 H 0.099 0.901 4 C -0.101 4.101 5 C -0.061 4.061 6 C -0.113 4.113 7 N -0.154 5.154 8 C -0.121 4.121 9 C -0.102 4.102 10 N -0.125 5.125 11 O -0.254 6.254 12 C 0.355 3.645 13 O -0.390 6.390 14 C -0.214 4.214 15 C -0.031 4.031 16 C -0.246 4.246 17 C -0.063 4.063 18 C -0.250 4.250 19 C 0.145 3.855 20 O -0.068 6.068 21 C -0.471 4.471 22 H 0.127 0.873 23 C -0.133 4.133 24 N -0.503 5.503 25 Si 0.723 3.277 26 H -0.200 1.200 27 H -0.211 1.211 28 H -0.163 1.163 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.184 0.816 35 H 0.185 0.815 36 H 0.187 0.813 37 H 0.146 0.854 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.157 0.843 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.013 -11.774 15.448 19.424 hybrid contribution -0.008 0.664 0.301 0.729 sum 0.006 -11.110 15.749 19.273 Atomic orbital electron populations 1.22194 0.94185 1.02944 1.03252 1.22357 0.94022 0.97076 0.82829 0.90142 1.20723 0.88180 1.03577 0.97670 1.22233 0.97804 0.95256 0.90779 1.23594 0.91758 0.97449 0.98535 1.68421 1.06464 1.12494 1.28055 1.23764 1.01695 0.96025 0.90593 1.23905 0.91711 0.95979 0.98630 1.68445 1.06023 1.11842 1.26155 1.86656 1.77778 1.41382 1.19589 1.21019 0.74929 0.85206 0.83328 1.90889 1.48531 1.15734 1.83834 1.18078 1.19085 0.93910 0.90293 1.20975 0.92463 0.92167 0.97457 1.20611 1.10612 0.99361 0.94013 1.21019 0.94590 0.93206 0.97434 1.21218 1.09192 0.95513 0.99073 1.19022 0.90480 0.84260 0.91735 1.83759 1.68667 1.14483 1.39928 1.20932 1.44671 0.90070 0.91391 0.87289 1.24487 0.95313 0.95278 0.98238 1.69634 1.44291 1.08333 1.28016 0.86230 0.80750 0.78728 0.81977 1.19993 1.21066 1.16265 0.91505 0.91072 0.91415 0.88001 0.88314 0.81646 0.81485 0.81266 0.85434 0.86851 0.86744 0.84311 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 9.55 37.16 0.35 -1.61 16 2 C 0.09 1.29 2.54 -26.73 -0.07 1.22 16 3 H 0.08 1.30 7.16 -51.93 -0.37 0.93 16 4 C -0.06 -0.63 5.37 -27.88 -0.15 -0.77 16 5 C 0.08 0.96 6.18 -82.41 -0.51 0.45 16 6 C 0.05 0.51 10.85 -17.37 -0.19 0.32 16 7 N -0.44 -5.30 10.50 -13.06 -0.14 -5.44 16 8 C 0.04 0.42 11.22 -17.37 -0.20 0.22 16 9 C 0.06 0.69 11.22 -17.37 -0.20 0.49 16 10 N -0.41 -5.73 9.11 -9.29 -0.08 -5.82 16 11 O -0.34 -5.73 7.86 -40.65 -0.32 -6.05 16 12 C 0.51 10.79 7.86 34.46 0.27 11.06 16 13 O -0.50 -12.42 14.43 -26.59 -0.38 -12.80 16 14 C -0.21 -4.46 5.89 -104.82 -0.62 -5.08 16 15 C -0.01 -0.21 9.61 -39.18 -0.38 -0.59 16 16 C -0.23 -3.63 10.02 -39.61 -0.40 -4.02 16 17 C -0.04 -0.75 10.03 -39.53 -0.40 -1.15 16 18 C -0.23 -4.86 9.16 -39.44 -0.36 -5.22 16 19 C 0.20 4.81 6.66 -38.58 -0.26 4.55 16 20 O -0.17 -4.62 6.67 -21.03 -0.14 -4.76 16 21 C -0.40 -11.26 9.95 30.90 0.31 -10.95 16 22 H 0.11 3.08 5.44 -52.49 -0.29 2.79 16 23 C 0.07 2.08 5.49 -17.51 -0.10 1.98 16 24 N -0.87 -25.03 13.96 55.48 0.77 -24.25 16 25 Si 0.90 23.07 28.62 -169.99 -4.86 18.20 16 26 H -0.27 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.24 -6.45 7.11 56.52 0.40 -6.05 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.10 0.64 7.89 -51.93 -0.41 0.23 16 33 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.17 1.23 7.95 -52.49 -0.42 0.81 16 35 H 0.17 1.25 8.06 -52.48 -0.42 0.83 16 36 H 0.17 1.62 8.06 -52.48 -0.42 1.19 16 37 H 0.13 1.93 7.61 -52.49 -0.40 1.54 16 38 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 39 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.14 3.01 5.64 -52.49 -0.30 2.72 16 41 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 358.87 15.07 5.41 5.41 Total: -1.00 -34.60 358.87 -7.32 -41.92 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -4.70 Total: 2.70 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -2.87 Total: -9.10 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.55 Total: -35.51 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.84 Total: -23.61 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -4.86 Total: 18.20 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.60 -7.32 -41.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893414555.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.512 kcal (2) G-P(sol) polarization free energy of solvation -34.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds