Wall clock time and date at job start Tue Mar 31 2020 16:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46942 * 2 1 4 4 C 1.53000 * 109.46958 * 119.99369 * 2 1 3 5 5 C 1.50702 * 109.47129 * 185.00185 * 4 2 1 6 6 C 1.38386 * 119.99999 * 124.72609 * 5 4 2 7 7 N 1.32129 * 119.99643 * 179.78228 * 6 5 4 8 8 C 1.32156 * 119.99743 * 0.49674 * 7 6 5 9 9 C 1.38343 * 120.00238 * 359.73250 * 8 7 6 10 10 N 1.32126 * 119.99857 * 305.00340 * 5 4 2 11 11 O 1.45197 * 109.47418 * 239.99765 * 2 1 3 12 12 C 1.34759 * 116.99732 * 90.00117 * 11 2 1 13 13 O 1.21510 * 120.00521 * 359.97438 * 12 11 2 14 14 C 1.47395 * 119.99859 * 180.02562 * 12 11 2 15 15 C 1.39737 * 120.20536 * 359.97438 * 14 12 11 16 16 C 1.37797 * 119.91625 * 180.02562 * 15 14 12 17 17 C 1.38587 * 120.33334 * 359.97438 * 16 15 14 18 18 C 1.38025 * 120.41352 * 0.02562 * 17 16 15 19 19 C 1.38827 * 120.07760 * 359.97438 * 18 17 16 20 20 O 1.35508 * 120.16807 * 179.97438 * 19 18 17 21 21 C 1.34815 * 116.99688 * 354.39487 * 20 19 18 22 22 H 1.07997 * 120.00113 * 5.05825 * 21 20 19 23 23 C 1.38700 * 119.99809 * 185.04796 * 21 20 19 24 24 N 1.31520 * 119.99867 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 120.00407 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47304 * 89.99382 * 25 23 21 27 27 H 1.48496 * 109.47594 * 209.99745 * 25 23 21 28 28 H 1.48505 * 109.46997 * 329.99707 * 25 23 21 29 29 H 1.09000 * 109.46942 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47405 * 300.00081 * 1 2 3 31 31 H 1.09003 * 109.47164 * 60.00538 * 1 2 3 32 32 H 1.08990 * 109.47644 * 305.00310 * 4 2 1 33 33 H 1.09001 * 109.46983 * 65.00464 * 4 2 1 34 34 H 1.07993 * 120.00082 * 0.02675 * 6 5 4 35 35 H 1.08006 * 119.99709 * 179.71854 * 8 7 6 36 36 H 1.08003 * 119.99660 * 180.02562 * 9 8 7 37 37 H 1.07996 * 120.03589 * 0.04186 * 15 14 12 38 38 H 1.08002 * 119.83392 * 180.02562 * 16 15 14 39 39 H 1.07998 * 119.79611 * 180.27658 * 17 16 15 40 40 H 1.07998 * 119.96128 * 180.02562 * 18 17 16 41 41 H 0.97002 * 119.99979 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 3.5419 -0.6148 1.3129 6 6 4.1513 -0.0887 2.4385 7 7 5.4683 0.0005 2.4958 8 6 6.2031 -0.4035 1.4743 9 6 5.5936 -0.9249 0.3472 10 7 4.2765 -1.0187 0.2917 11 8 2.0141 -0.6845 -1.1855 12 6 2.2180 0.0670 -2.2853 13 8 1.9970 1.2614 -2.2548 14 6 2.7082 -0.5602 -3.5259 15 6 2.9633 -1.9335 -3.5661 16 6 3.4219 -2.5136 -4.7288 17 6 3.6315 -1.7417 -5.8606 18 6 3.3840 -0.3841 -5.8362 19 6 2.9216 0.2181 -4.6739 20 8 2.6785 1.5509 -4.6478 21 6 3.0152 2.2561 -5.7463 22 1 3.3811 1.7453 -6.6247 23 6 2.8915 3.6375 -5.7485 24 7 3.2195 4.3255 -6.8203 25 14 2.2591 4.5211 -4.2290 26 1 3.4024 4.8733 -3.3493 27 1 1.5482 5.7596 -4.6364 28 1 1.3237 3.6328 -3.4933 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 1.6054 -0.2616 2.1370 33 1 1.7516 -1.7714 1.2057 34 1 3.5506 0.2452 3.2715 35 1 7.2794 -0.3263 1.5194 36 1 6.1941 -1.2555 -0.4874 37 1 2.8009 -2.5394 -2.6870 38 1 3.6183 -3.5752 -4.7585 39 1 3.9869 -2.2061 -6.7686 40 1 3.5495 0.2104 -6.7226 41 1 3.1334 5.2916 -6.8217 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893414555.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:55 Heat of formation + Delta-G solvation = -57.226173 kcal Electronic energy + Delta-G solvation = -27780.273001 eV Core-core repulsion = 23818.698100 eV Total energy + Delta-G solvation = -3961.574901 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.08025 -41.55687 -40.50958 -38.28057 -37.67563 -35.55051 -34.57663 -34.53607 -32.57554 -31.86923 -30.84772 -28.38686 -27.40977 -25.78009 -25.35470 -24.16378 -23.30462 -22.32143 -21.53128 -19.90774 -19.44124 -18.58498 -18.38337 -17.91257 -17.54510 -17.09168 -16.76053 -16.51186 -15.97307 -15.85501 -15.67290 -15.48301 -15.37177 -14.94407 -14.57987 -14.28350 -14.21699 -14.05866 -13.86408 -13.36197 -13.17933 -13.13453 -12.93748 -12.86590 -12.63868 -12.48797 -12.43405 -12.23022 -12.06960 -11.88868 -11.66639 -11.50726 -11.10636 -11.01325 -10.16151 -9.96205 -9.93895 -9.21559 -8.62214 -6.31153 -0.18206 -0.07099 0.19338 0.62538 1.19670 1.24326 1.51552 1.75001 1.81546 2.23711 2.70800 2.73468 2.93473 3.09992 3.12920 3.37953 3.46331 3.74992 3.83573 3.91336 4.04592 4.06874 4.15964 4.22525 4.32170 4.46013 4.47863 4.53606 4.57144 4.71977 4.75219 4.75313 4.91342 4.93426 5.09423 5.17959 5.27163 5.44256 5.46139 5.54871 5.61333 5.69960 5.80380 6.12048 6.35117 6.73727 6.86200 7.02418 7.51299 8.48043 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.010790 B = 0.004425 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.433132 B = 6326.272793 C = 7086.751140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.083 3.917 3 H 0.049 0.951 4 C -0.052 4.052 5 C 0.062 3.938 6 C 0.048 3.952 7 N -0.462 5.462 8 C 0.039 3.961 9 C 0.040 3.960 10 N -0.446 5.446 11 O -0.325 6.325 12 C 0.510 3.490 13 O -0.546 6.546 14 C -0.222 4.222 15 C -0.006 4.006 16 C -0.193 4.193 17 C -0.030 4.030 18 C -0.251 4.251 19 C 0.167 3.833 20 O -0.210 6.210 21 C -0.403 4.403 22 H 0.096 0.904 23 C 0.029 3.971 24 N -0.907 5.907 25 Si 0.950 3.050 26 H -0.279 1.279 27 H -0.262 1.262 28 H -0.266 1.266 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.031 0.969 32 H 0.145 0.855 33 H 0.114 0.886 34 H 0.199 0.801 35 H 0.195 0.805 36 H 0.184 0.816 37 H 0.158 0.842 38 H 0.167 0.833 39 H 0.157 0.843 40 H 0.121 0.879 41 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.152 -16.228 17.660 23.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.028 3.972 3 H 0.067 0.933 4 C -0.090 4.090 5 C -0.079 4.079 6 C -0.111 4.111 7 N -0.177 5.177 8 C -0.120 4.120 9 C -0.119 4.119 10 N -0.161 5.161 11 O -0.242 6.242 12 C 0.358 3.642 13 O -0.438 6.438 14 C -0.225 4.225 15 C -0.024 4.024 16 C -0.211 4.211 17 C -0.048 4.048 18 C -0.270 4.270 19 C 0.114 3.886 20 O -0.115 6.115 21 C -0.479 4.479 22 H 0.113 0.887 23 C -0.172 4.172 24 N -0.546 5.546 25 Si 0.775 3.225 26 H -0.205 1.205 27 H -0.187 1.187 28 H -0.191 1.191 29 H 0.106 0.894 30 H 0.123 0.877 31 H 0.050 0.950 32 H 0.163 0.837 33 H 0.132 0.868 34 H 0.216 0.784 35 H 0.212 0.788 36 H 0.201 0.799 37 H 0.175 0.825 38 H 0.184 0.816 39 H 0.175 0.825 40 H 0.139 0.861 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.005 -15.505 17.781 23.591 hybrid contribution 0.055 1.318 -0.257 1.344 sum 0.050 -14.186 17.523 22.546 Atomic orbital electron populations 1.22188 0.92396 1.04241 1.03162 1.22767 0.95530 0.95998 0.82924 0.93299 1.20848 0.87011 1.04374 0.96772 1.22608 0.98726 0.95614 0.90922 1.24112 0.91723 0.96200 0.99103 1.68491 1.07252 1.13236 1.28680 1.24197 1.03019 0.94857 0.89897 1.24217 0.91513 0.96562 0.99624 1.68384 1.07145 1.13114 1.27480 1.86622 1.77223 1.40795 1.19527 1.21159 0.73987 0.84730 0.84345 1.90873 1.50429 1.17796 1.84729 1.18516 1.18713 0.95523 0.89703 1.21378 0.91277 0.90388 0.99349 1.21254 1.06112 1.01624 0.92159 1.21513 0.92335 0.91270 0.99692 1.21298 1.10403 0.97527 0.97766 1.19697 0.91493 0.83618 0.93743 1.83747 1.71985 1.16220 1.39510 1.20910 1.44784 0.90504 0.91694 0.88666 1.25002 0.96203 0.95897 1.00051 1.69672 1.47145 1.08714 1.29082 0.85494 0.79585 0.78095 0.79373 1.20451 1.18656 1.19092 0.89409 0.87725 0.94986 0.83717 0.86756 0.78378 0.78773 0.79931 0.82470 0.81580 0.82549 0.86099 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 9.55 71.98 0.69 -2.84 16 2 C 0.08 2.21 2.54 30.59 0.08 2.29 16 3 H 0.05 1.62 7.16 -2.39 -0.02 1.60 16 4 C -0.05 -0.87 5.37 29.85 0.16 -0.71 16 5 C 0.06 1.36 6.18 42.55 0.26 1.63 16 6 C 0.05 0.93 10.85 84.68 0.92 1.85 16 7 N -0.46 -10.32 10.50 -195.22 -2.05 -12.37 16 8 C 0.04 0.79 11.22 84.67 0.95 1.74 16 9 C 0.04 0.92 11.22 84.67 0.95 1.87 16 10 N -0.45 -11.90 9.11 -183.29 -1.67 -13.57 16 11 O -0.33 -10.82 7.86 -56.70 -0.45 -11.26 16 12 C 0.51 22.07 7.86 70.23 0.55 22.63 16 13 O -0.55 -28.56 14.43 26.80 0.39 -28.17 16 14 C -0.22 -9.36 5.89 -19.99 -0.12 -9.48 16 15 C -0.01 -0.18 9.61 22.53 0.22 0.03 16 16 C -0.19 -5.12 10.02 22.25 0.22 -4.90 16 17 C -0.03 -0.93 10.03 22.30 0.22 -0.70 16 18 C -0.25 -10.65 9.16 22.36 0.20 -10.44 16 19 C 0.17 8.23 6.66 22.92 0.15 8.38 16 20 O -0.21 -12.31 6.67 0.96 0.01 -12.30 16 21 C -0.40 -24.49 9.95 67.93 0.68 -23.82 16 22 H 0.10 5.81 5.44 -2.91 -0.02 5.80 16 23 C 0.03 1.77 5.49 84.85 0.47 2.24 16 24 N -0.91 -55.01 13.96 21.62 0.30 -54.71 16 25 Si 0.95 50.56 28.62 68.60 1.96 52.52 16 26 H -0.28 -14.72 7.11 99.48 0.71 -14.02 16 27 H -0.26 -12.69 7.11 99.48 0.71 -11.98 16 28 H -0.27 -15.18 7.11 99.48 0.71 -14.48 16 29 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.15 1.16 7.89 -2.39 -0.02 1.14 16 33 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.20 2.24 7.95 -2.91 -0.02 2.22 16 35 H 0.20 2.54 8.06 -2.91 -0.02 2.52 16 36 H 0.18 3.31 8.06 -2.91 -0.02 3.29 16 37 H 0.16 4.03 7.61 -2.91 -0.02 4.00 16 38 H 0.17 2.89 8.06 -2.91 -0.02 2.86 16 39 H 0.16 3.55 8.06 -2.91 -0.02 3.53 16 40 H 0.12 5.53 5.64 -2.91 -0.02 5.51 16 41 H 0.29 16.01 8.31 -92.71 -0.77 15.24 16 Total: -1.00 -83.54 358.87 6.16 -77.37 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 1.07 Total: 12.74 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: 6.61 Total: -10.25 kcal Atomic # 7 Polarization: -77.23 SS G_CDS: -3.42 Total: -80.65 kcal Atomic # 8 Polarization: -51.68 SS G_CDS: -0.05 Total: -51.73 kcal Atomic # 14 Polarization: 50.56 SS G_CDS: 1.96 Total: 52.52 kcal Total: -83.54 6.16 -77.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893414555.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.147 kcal (2) G-P(sol) polarization free energy of solvation -83.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds