Wall clock time and date at job start Tue Mar 31 2020 16:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.28443 * 125.20359 * 2 1 4 4 C 1.31089 * 110.98948 * 180.31482 * 3 2 1 5 5 C 1.39490 * 107.61289 * 359.70233 * 4 3 2 6 6 C 1.36716 * 125.20351 * 179.81998 * 2 1 3 7 7 C 1.46985 * 126.95332 * 359.97234 * 6 2 1 8 8 O 1.21560 * 120.00325 * 179.68629 * 7 6 2 9 9 O 1.34839 * 119.99979 * 359.69003 * 7 6 2 10 10 C 1.35899 * 117.00074 * 175.01356 * 9 7 6 11 11 C 1.38829 * 120.02376 * 255.30550 * 10 9 7 12 12 C 1.38188 * 120.08093 * 179.97438 * 11 10 9 13 13 C 1.38152 * 120.12718 * 359.76768 * 12 11 10 14 14 C 1.38901 * 120.04019 * 0.51397 * 13 12 11 15 15 O 1.35755 * 120.04187 * 179.74240 * 14 13 12 16 16 C 1.34828 * 117.00197 * 174.13120 * 15 14 13 17 17 H 1.08001 * 119.99883 * 5.06110 * 16 15 14 18 18 C 1.38644 * 119.99879 * 185.06007 * 16 15 14 19 19 N 1.31559 * 120.00496 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99924 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47264 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47308 * 120.00083 * 20 18 16 23 23 H 1.48499 * 109.47382 * 240.00272 * 20 18 16 24 24 C 1.38593 * 120.02082 * 75.29017 * 10 9 7 25 25 C 1.50846 * 109.89041 * 180.02562 * 5 4 3 26 26 C 1.54421 * 105.16460 * 17.05643 * 25 5 4 27 27 C 1.51277 * 143.01076 * 179.66902 * 4 3 2 28 28 H 1.09002 * 109.46768 * 270.18079 * 1 2 3 29 29 H 1.08995 * 109.47538 * 30.18335 * 1 2 3 30 30 H 1.09003 * 109.47526 * 150.18516 * 1 2 3 31 31 H 1.08003 * 119.96083 * 359.97438 * 11 10 9 32 32 H 1.08003 * 119.93283 * 180.02562 * 12 11 10 33 33 H 1.07999 * 119.98042 * 180.27287 * 13 12 11 34 34 H 0.97002 * 120.00572 * 179.97438 * 19 18 16 35 35 H 1.07998 * 120.05772 * 359.97438 * 24 10 9 36 36 H 1.09001 * 110.30894 * 135.98427 * 25 5 4 37 37 H 1.09004 * 110.30747 * 258.13483 * 25 5 4 38 38 H 1.09005 * 110.78316 * 92.02619 * 26 25 5 39 39 H 1.09002 * 110.78172 * 215.27234 * 26 25 5 40 40 H 1.09002 * 110.28398 * 43.94932 * 27 4 3 41 41 H 1.09007 * 110.27934 * 281.85655 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2054 1.0495 0.0000 4 6 3.4761 0.7277 -0.0067 5 6 3.5589 -0.6648 -0.0046 6 6 2.2531 -1.1171 0.0035 7 6 1.8027 -2.5163 0.0085 8 8 2.6185 -3.4174 0.0055 9 8 0.4846 -2.8002 0.0163 10 6 0.1349 -4.1095 -0.0847 11 6 -0.3661 -4.6044 -1.2811 12 6 -0.7216 -5.9357 -1.3853 13 6 -0.5752 -6.7794 -0.3012 14 6 -0.0800 -6.2884 0.9001 15 8 0.0590 -7.1163 1.9670 16 6 0.6574 -6.6074 3.0628 17 1 0.9273 -5.5621 3.0944 18 6 0.9261 -7.4260 4.1491 19 7 0.5969 -8.6991 4.1109 20 14 1.7558 -6.7211 5.6671 21 1 2.0207 -5.2747 5.4598 22 1 0.8672 -6.8974 6.8438 23 1 3.0385 -7.4306 5.9047 24 6 0.2784 -4.9517 1.0065 25 6 5.0053 -1.0930 -0.0115 26 6 5.7994 0.1594 0.4191 27 6 4.8709 1.3133 -0.0164 28 1 -0.3633 0.0032 1.0277 29 1 -0.3634 0.8883 -0.5166 30 1 -0.3634 -0.8916 -0.5110 31 1 -0.4782 -3.9481 -2.1316 32 1 -1.1107 -6.3183 -2.3174 33 1 -0.8496 -7.8204 -0.3866 34 1 0.7852 -9.2719 4.8707 35 1 0.6686 -4.5687 1.9378 36 1 5.1631 -1.9040 0.6995 37 1 5.3030 -1.4038 -1.0130 38 1 5.9494 0.1699 1.4988 39 1 6.7549 0.2100 -0.1030 40 1 4.9386 2.1400 0.6908 41 1 5.1320 1.6508 -1.0195 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905948570.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:13 Heat of formation + Delta-G solvation = 16.482677 kcal Electronic energy + Delta-G solvation = -27273.702292 eV Core-core repulsion = 23315.323647 eV Total energy + Delta-G solvation = -3958.378645 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -42.92247 -40.80699 -38.81425 -37.27475 -36.99448 -35.78916 -32.48728 -32.33625 -31.12353 -29.77139 -28.99942 -27.76193 -26.68707 -25.51666 -24.41002 -22.26322 -21.75934 -21.31133 -20.45649 -19.83716 -18.35555 -17.89877 -17.41949 -16.78100 -16.12504 -15.87246 -15.71839 -15.22912 -15.15790 -14.50832 -14.20939 -14.15890 -14.06821 -13.65340 -13.25484 -13.11359 -12.99493 -12.82391 -12.69018 -12.61769 -12.06376 -11.95968 -11.63711 -11.40090 -11.36221 -11.20749 -11.12858 -10.96746 -10.72517 -10.51256 -10.47669 -10.40341 -9.58412 -9.27566 -8.92363 -8.76478 -8.26616 -7.42772 -6.52698 -4.12136 0.94259 1.63134 2.13141 2.18754 2.30789 2.83483 2.94334 3.09392 3.11760 3.16853 3.63655 3.91376 4.33818 4.46363 4.59238 4.78389 4.82404 4.94756 4.98546 5.00021 5.04077 5.14643 5.35231 5.37109 5.51994 5.52873 5.59449 5.64130 5.70182 5.76742 5.89835 5.93365 6.00096 6.07611 6.16235 6.26651 6.47227 6.58635 6.75886 6.89948 7.01445 7.05704 7.27156 7.48911 7.80686 7.90645 8.00674 8.92541 9.57386 10.64634 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.011534 B = 0.003697 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.998610 B = 7571.231879 C = 9035.924138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.264 5.264 3 N -0.249 5.249 4 C -0.006 4.006 5 C -0.139 4.139 6 C -0.006 4.006 7 C 0.530 3.470 8 O -0.460 6.460 9 O -0.297 6.297 10 C 0.117 3.883 11 C -0.210 4.210 12 C -0.065 4.065 13 C -0.183 4.183 14 C 0.164 3.836 15 O -0.169 6.169 16 C -0.393 4.393 17 H 0.092 0.908 18 C 0.043 3.957 19 N -0.858 5.858 20 Si 0.940 3.060 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.273 1.273 24 C -0.227 4.227 25 C -0.049 4.049 26 C -0.117 4.117 27 C -0.024 4.024 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.271 0.729 35 H 0.132 0.868 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.300 17.998 -8.901 20.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.054 5.054 3 N -0.082 5.082 4 C -0.163 4.163 5 C -0.150 4.150 6 C -0.130 4.130 7 C 0.372 3.628 8 O -0.342 6.342 9 O -0.212 6.212 10 C 0.077 3.923 11 C -0.229 4.229 12 C -0.083 4.083 13 C -0.203 4.203 14 C 0.109 3.891 15 O -0.072 6.072 16 C -0.469 4.469 17 H 0.109 0.891 18 C -0.162 4.162 19 N -0.492 5.492 20 Si 0.765 3.235 21 H -0.191 1.191 22 H -0.200 1.200 23 H -0.199 1.199 24 C -0.247 4.247 25 C -0.087 4.087 26 C -0.154 4.154 27 C -0.063 4.063 28 H 0.108 0.892 29 H 0.117 0.883 30 H 0.128 0.872 31 H 0.132 0.868 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.081 0.919 35 H 0.150 0.850 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.591 18.098 -8.668 20.385 hybrid contribution 0.599 -0.364 0.854 1.105 sum 4.191 17.734 -7.813 19.827 Atomic orbital electron populations 1.22404 0.71721 1.06018 1.05265 1.45880 1.07855 1.01175 1.50534 1.72676 1.02995 1.13057 1.19512 1.22800 0.92810 0.94054 1.06610 1.21185 0.93826 0.95410 1.04540 1.19579 0.90532 0.85755 1.17094 1.19935 0.81301 0.87250 0.74283 1.90959 1.53862 1.46168 1.43211 1.84560 1.25378 1.27692 1.83605 1.18179 0.99807 0.80168 0.94164 1.20491 1.10506 0.96148 0.95771 1.20487 0.98149 0.92127 0.97541 1.20359 1.07973 1.00515 0.91410 1.19107 0.92721 0.88746 0.88537 1.83999 1.67289 1.36567 1.19311 1.21372 1.38501 0.95963 0.91071 0.89105 1.25284 0.96976 0.95164 0.98800 1.70040 1.43528 1.04367 1.31303 0.85653 0.78882 0.79087 0.79906 1.19091 1.19961 1.19880 1.21214 1.09890 0.93977 0.99599 1.20474 0.86875 0.98464 1.02872 1.22418 0.97966 0.92996 1.02070 1.20423 0.85069 0.98150 1.02696 0.89230 0.88336 0.87180 0.86761 0.85880 0.85762 0.91885 0.85012 0.89834 0.89674 0.90479 0.89603 0.90124 0.89593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.83 10.81 59.84 0.65 1.48 16 2 N -0.26 -3.59 3.75 -63.97 -0.24 -3.83 16 3 N -0.25 -3.43 11.91 33.78 0.40 -3.03 16 4 C -0.01 -0.07 8.13 -82.16 -0.67 -0.74 16 5 C -0.14 -1.98 6.83 -104.10 -0.71 -2.69 16 6 C -0.01 -0.09 6.96 -82.16 -0.57 -0.66 16 7 C 0.53 9.59 7.79 34.27 0.27 9.85 16 8 O -0.46 -9.73 16.39 -19.31 -0.32 -10.04 16 9 O -0.30 -5.20 7.50 -25.06 -0.19 -5.39 16 10 C 0.12 2.32 5.19 -39.23 -0.20 2.12 16 11 C -0.21 -3.71 9.99 -39.38 -0.39 -4.10 16 12 C -0.06 -1.12 10.03 -39.63 -0.40 -1.52 16 13 C -0.18 -3.79 9.99 -39.37 -0.39 -4.18 16 14 C 0.16 3.98 6.65 -39.13 -0.26 3.72 16 15 O -0.17 -4.81 9.76 0.04 0.00 -4.81 16 16 C -0.39 -11.13 9.49 30.88 0.29 -10.84 16 17 H 0.09 2.45 5.20 -52.49 -0.27 2.18 16 18 C 0.04 1.18 5.49 -17.52 -0.10 1.09 16 19 N -0.86 -25.03 13.67 55.48 0.76 -24.27 16 20 Si 0.94 20.84 29.55 -169.99 -5.02 15.82 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 22 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 24 C -0.23 -5.20 8.59 -39.24 -0.34 -5.54 16 25 C -0.05 -0.55 6.76 -27.07 -0.18 -0.73 16 26 C -0.12 -0.92 7.07 -25.27 -0.18 -1.10 16 27 C -0.02 -0.21 6.76 -26.88 -0.18 -0.39 16 28 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.11 1.09 6.17 -51.93 -0.32 0.77 16 31 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 32 H 0.12 1.67 8.06 -52.48 -0.42 1.24 16 33 H 0.12 2.41 8.06 -52.49 -0.42 1.98 16 34 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.13 3.15 5.64 -52.49 -0.30 2.85 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.60 8.14 -51.92 -0.42 0.18 16 LS Contribution 355.00 15.07 5.35 5.35 Total: -1.00 -34.05 355.00 -7.30 -41.35 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -4.67 Total: 3.09 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -3.37 Total: -14.23 kcal Atomic # 7 Polarization: -32.06 SS G_CDS: 0.92 Total: -31.14 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.50 Total: -20.24 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.05 -7.30 -41.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905948570.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.835 kcal (2) G-P(sol) polarization free energy of solvation -34.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds