Wall clock time and date at job start Tue Mar 31 2020 16:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.28443 * 125.20359 * 2 1 4 4 C 1.31089 * 110.98948 * 180.31482 * 3 2 1 5 5 C 1.39490 * 107.61289 * 359.70233 * 4 3 2 6 6 C 1.36716 * 125.20351 * 179.81998 * 2 1 3 7 7 C 1.46985 * 126.95332 * 359.97234 * 6 2 1 8 8 O 1.21560 * 120.00325 * 179.68629 * 7 6 2 9 9 O 1.34839 * 119.99979 * 359.69003 * 7 6 2 10 10 C 1.35899 * 117.00074 * 175.01356 * 9 7 6 11 11 C 1.38829 * 120.02376 * 255.30550 * 10 9 7 12 12 C 1.38188 * 120.08093 * 179.97438 * 11 10 9 13 13 C 1.38152 * 120.12718 * 359.76768 * 12 11 10 14 14 C 1.38901 * 120.04019 * 0.51397 * 13 12 11 15 15 O 1.35755 * 120.04187 * 179.74240 * 14 13 12 16 16 C 1.34828 * 117.00197 * 174.13120 * 15 14 13 17 17 H 1.08001 * 119.99883 * 5.06110 * 16 15 14 18 18 C 1.38644 * 119.99879 * 185.06007 * 16 15 14 19 19 N 1.31559 * 120.00496 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99924 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47264 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47308 * 120.00083 * 20 18 16 23 23 H 1.48499 * 109.47382 * 240.00272 * 20 18 16 24 24 C 1.38593 * 120.02082 * 75.29017 * 10 9 7 25 25 C 1.50846 * 109.89041 * 180.02562 * 5 4 3 26 26 C 1.54421 * 105.16460 * 17.05643 * 25 5 4 27 27 C 1.51277 * 143.01076 * 179.66902 * 4 3 2 28 28 H 1.09002 * 109.46768 * 270.18079 * 1 2 3 29 29 H 1.08995 * 109.47538 * 30.18335 * 1 2 3 30 30 H 1.09003 * 109.47526 * 150.18516 * 1 2 3 31 31 H 1.08003 * 119.96083 * 359.97438 * 11 10 9 32 32 H 1.08003 * 119.93283 * 180.02562 * 12 11 10 33 33 H 1.07999 * 119.98042 * 180.27287 * 13 12 11 34 34 H 0.97002 * 120.00572 * 179.97438 * 19 18 16 35 35 H 1.07998 * 120.05772 * 359.97438 * 24 10 9 36 36 H 1.09001 * 110.30894 * 135.98427 * 25 5 4 37 37 H 1.09004 * 110.30747 * 258.13483 * 25 5 4 38 38 H 1.09005 * 110.78316 * 92.02619 * 26 25 5 39 39 H 1.09002 * 110.78172 * 215.27234 * 26 25 5 40 40 H 1.09002 * 110.28398 * 43.94932 * 27 4 3 41 41 H 1.09007 * 110.27934 * 281.85655 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2054 1.0495 0.0000 4 6 3.4761 0.7277 -0.0067 5 6 3.5589 -0.6648 -0.0046 6 6 2.2531 -1.1171 0.0035 7 6 1.8027 -2.5163 0.0085 8 8 2.6185 -3.4174 0.0055 9 8 0.4846 -2.8002 0.0163 10 6 0.1349 -4.1095 -0.0847 11 6 -0.3661 -4.6044 -1.2811 12 6 -0.7216 -5.9357 -1.3853 13 6 -0.5752 -6.7794 -0.3012 14 6 -0.0800 -6.2884 0.9001 15 8 0.0590 -7.1163 1.9670 16 6 0.6574 -6.6074 3.0628 17 1 0.9273 -5.5621 3.0944 18 6 0.9261 -7.4260 4.1491 19 7 0.5969 -8.6991 4.1109 20 14 1.7558 -6.7211 5.6671 21 1 2.0207 -5.2747 5.4598 22 1 0.8672 -6.8974 6.8438 23 1 3.0385 -7.4306 5.9047 24 6 0.2784 -4.9517 1.0065 25 6 5.0053 -1.0930 -0.0115 26 6 5.7994 0.1594 0.4191 27 6 4.8709 1.3133 -0.0164 28 1 -0.3633 0.0032 1.0277 29 1 -0.3634 0.8883 -0.5166 30 1 -0.3634 -0.8916 -0.5110 31 1 -0.4782 -3.9481 -2.1316 32 1 -1.1107 -6.3183 -2.3174 33 1 -0.8496 -7.8204 -0.3866 34 1 0.7852 -9.2719 4.8707 35 1 0.6686 -4.5687 1.9378 36 1 5.1631 -1.9040 0.6995 37 1 5.3030 -1.4038 -1.0130 38 1 5.9494 0.1699 1.4988 39 1 6.7549 0.2100 -0.1030 40 1 4.9386 2.1400 0.6908 41 1 5.1320 1.6508 -1.0195 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905948570.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:10 Heat of formation + Delta-G solvation = -3.850800 kcal Electronic energy + Delta-G solvation = -27274.584018 eV Core-core repulsion = 23315.323647 eV Total energy + Delta-G solvation = -3959.260371 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.96093 -42.30822 -40.58555 -38.72369 -38.03933 -37.40539 -34.38470 -33.41758 -32.19786 -31.34145 -30.68464 -28.65948 -27.61261 -27.43901 -25.76880 -23.67603 -23.23232 -22.49698 -21.49707 -21.07000 -20.17285 -19.53052 -18.62255 -17.98706 -17.79312 -17.18812 -16.91903 -16.80383 -16.16354 -16.02404 -15.85578 -15.74082 -15.46928 -14.97272 -14.77943 -14.55381 -13.94885 -13.84589 -13.82748 -13.66451 -13.46873 -13.26201 -13.08751 -12.82636 -12.80602 -12.62156 -12.21442 -12.20153 -12.07402 -12.02378 -11.85081 -11.60501 -11.53205 -10.90087 -10.38162 -9.88780 -9.71726 -9.21483 -8.56997 -6.26239 -0.30307 0.02748 0.49611 1.17217 1.27297 1.27489 1.34964 1.44872 1.52634 1.60536 2.09288 2.67204 2.73365 3.00000 3.20489 3.36500 3.79447 3.86363 3.94499 4.05671 4.12705 4.18020 4.20970 4.24931 4.26380 4.45343 4.52063 4.56039 4.63764 4.78413 4.81517 4.87975 4.97219 4.98257 4.98266 5.18899 5.19450 5.31141 5.33415 5.35476 5.42869 5.48948 5.62143 5.89973 5.90292 6.45318 6.82076 6.87062 7.61450 8.65386 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.011534 B = 0.003697 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.998610 B = 7571.231879 C = 9035.924138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.262 5.262 3 N -0.254 5.254 4 C -0.009 4.009 5 C -0.153 4.153 6 C -0.038 4.038 7 C 0.535 3.465 8 O -0.501 6.501 9 O -0.284 6.284 10 C 0.109 3.891 11 C -0.184 4.184 12 C -0.046 4.046 13 C -0.188 4.188 14 C 0.128 3.872 15 O -0.219 6.219 16 C -0.418 4.418 17 H 0.089 0.911 18 C -0.013 4.013 19 N -0.910 5.910 20 Si 1.012 2.988 21 H -0.263 1.263 22 H -0.259 1.259 23 H -0.263 1.263 24 C -0.244 4.244 25 C -0.056 4.056 26 C -0.105 4.105 27 C -0.022 4.022 28 H 0.096 0.904 29 H 0.126 0.874 30 H 0.108 0.892 31 H 0.159 0.841 32 H 0.179 0.821 33 H 0.133 0.867 34 H 0.276 0.724 35 H 0.107 0.893 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.117 0.883 40 H 0.098 0.902 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.888 20.946 -10.919 24.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.053 5.053 3 N -0.089 5.089 4 C -0.165 4.165 5 C -0.164 4.164 6 C -0.161 4.161 7 C 0.379 3.621 8 O -0.386 6.386 9 O -0.199 6.199 10 C 0.069 3.931 11 C -0.203 4.203 12 C -0.064 4.064 13 C -0.207 4.207 14 C 0.077 3.923 15 O -0.125 6.125 16 C -0.494 4.494 17 H 0.106 0.894 18 C -0.212 4.212 19 N -0.547 5.547 20 Si 0.831 3.169 21 H -0.187 1.187 22 H -0.183 1.183 23 H -0.187 1.187 24 C -0.264 4.264 25 C -0.094 4.094 26 C -0.142 4.142 27 C -0.061 4.061 28 H 0.115 0.885 29 H 0.145 0.855 30 H 0.126 0.874 31 H 0.176 0.824 32 H 0.196 0.804 33 H 0.151 0.849 34 H 0.086 0.914 35 H 0.125 0.875 36 H 0.083 0.917 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.135 0.865 40 H 0.116 0.884 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.147 21.091 -10.732 24.025 hybrid contribution 0.332 -1.087 1.148 1.615 sum 4.479 20.005 -9.583 22.629 Atomic orbital electron populations 1.22691 0.70045 1.07283 1.06169 1.46196 1.08841 1.00373 1.49919 1.72670 1.03681 1.13008 1.19509 1.23612 0.93834 0.93760 1.05338 1.21792 0.94527 0.96607 1.03481 1.19523 0.91767 0.85032 1.19818 1.20327 0.80747 0.88036 0.72969 1.90937 1.54590 1.47536 1.45490 1.84593 1.25457 1.26312 1.83533 1.18371 0.99859 0.80764 0.94153 1.21104 1.06680 0.96875 0.95646 1.21095 0.95772 0.91353 0.98189 1.20757 1.07200 1.01780 0.91013 1.19691 0.94258 0.89234 0.89144 1.83956 1.69852 1.38141 1.20529 1.21686 1.39472 0.96233 0.92005 0.89407 1.26467 0.97383 0.95479 1.01825 1.70148 1.45896 1.05897 1.32788 0.84636 0.78156 0.78316 0.75747 1.18740 1.18331 1.18728 1.21169 1.10927 0.94338 1.00001 1.20676 0.85970 0.99785 1.02991 1.22454 0.98609 0.90541 1.02644 1.20662 0.82278 0.98598 1.04564 0.88523 0.85526 0.87408 0.82382 0.80418 0.84889 0.91439 0.87493 0.91664 0.88846 0.90246 0.86462 0.88353 0.87384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.38 10.81 127.77 1.38 2.76 16 2 N -0.26 -6.86 3.75 -356.31 -1.34 -8.19 16 3 N -0.25 -6.59 11.91 -47.04 -0.56 -7.15 16 4 C -0.01 -0.21 8.13 43.15 0.35 0.14 16 5 C -0.15 -4.26 6.83 -19.53 -0.13 -4.39 16 6 C -0.04 -1.19 6.96 40.66 0.28 -0.91 16 7 C 0.53 19.64 7.79 70.11 0.55 20.18 16 8 O -0.50 -21.94 16.39 19.64 0.32 -21.62 16 9 O -0.28 -9.89 7.50 -0.95 -0.01 -9.89 16 10 C 0.11 4.29 5.19 22.50 0.12 4.41 16 11 C -0.18 -5.90 9.99 22.40 0.22 -5.68 16 12 C -0.05 -1.45 10.03 22.24 0.22 -1.22 16 13 C -0.19 -7.72 9.99 22.41 0.22 -7.49 16 14 C 0.13 6.52 6.65 22.56 0.15 6.67 16 15 O -0.22 -13.37 9.76 -22.77 -0.22 -13.59 16 16 C -0.42 -25.36 9.49 67.92 0.64 -24.71 16 17 H 0.09 5.15 5.20 -2.91 -0.02 5.13 16 18 C -0.01 -0.73 5.49 84.83 0.47 -0.27 16 19 N -0.91 -55.94 13.67 21.61 0.30 -55.64 16 20 Si 1.01 44.49 29.55 68.60 2.03 46.52 16 21 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 22 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 23 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 24 C -0.24 -11.74 8.59 22.49 0.19 -11.54 16 25 C -0.06 -1.22 6.76 30.38 0.21 -1.01 16 26 C -0.10 -1.35 7.07 31.54 0.22 -1.13 16 27 C -0.02 -0.31 6.76 30.50 0.21 -0.10 16 28 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.13 1.53 8.14 -2.39 -0.02 1.52 16 30 H 0.11 1.98 6.17 -2.39 -0.01 1.96 16 31 H 0.16 3.78 8.06 -2.91 -0.02 3.76 16 32 H 0.18 3.70 8.06 -2.91 -0.02 3.68 16 33 H 0.13 5.14 8.06 -2.91 -0.02 5.11 16 34 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 35 H 0.11 5.56 5.64 -2.91 -0.02 5.54 16 36 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 38 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -81.20 355.00 6.90 -74.30 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 1.08 Total: 19.56 kcal Atomic # 6 Polarization: -29.60 SS G_CDS: 5.30 Total: -24.30 kcal Atomic # 7 Polarization: -69.38 SS G_CDS: -1.60 Total: -70.98 kcal Atomic # 8 Polarization: -45.19 SS G_CDS: 0.09 Total: -45.10 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -81.20 6.90 -74.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905948570.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.448 kcal (2) G-P(sol) polarization free energy of solvation -81.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds