Wall clock time and date at job start Tue Mar 31 2020 14:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35409 * 119.58038 * 2 1 4 4 C 1.41920 * 117.83122 * 180.25415 * 3 2 1 5 5 O 1.22111 * 121.40640 * 179.72813 * 4 3 2 6 6 C 1.47164 * 117.19157 * 359.75376 * 4 3 2 7 7 C 1.47529 * 120.63043 * 180.02562 * 6 4 3 8 8 O 1.21489 * 120.00105 * 359.97438 * 7 6 4 9 9 O 1.34750 * 119.99636 * 179.97438 * 7 6 4 10 10 C 1.45201 * 116.99517 * 180.02562 * 9 7 6 11 11 C 1.53010 * 109.46993 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47108 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00120 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99951 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99631 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99835 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47108 * 60.00088 * 16 14 12 18 18 H 1.48496 * 109.46758 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46930 * 300.00040 * 16 14 12 20 20 N 1.31700 * 118.73902 * 359.97438 * 6 4 3 21 21 N 1.28180 * 122.09407 * 0.02562 * 20 6 4 22 22 C 1.39884 * 118.35052 * 179.97438 * 21 20 6 23 23 C 1.38925 * 120.07307 * 314.01186 * 22 21 20 24 24 C 1.38098 * 119.92491 * 179.97438 * 23 22 21 25 25 C 1.38295 * 120.07518 * 359.97438 * 24 23 22 26 26 C 1.38303 * 120.14936 * 0.04351 * 25 24 23 27 27 C 1.38096 * 120.07118 * 359.97401 * 26 25 24 28 28 H 1.09005 * 109.46840 * 265.98078 * 1 2 3 29 29 H 1.08993 * 109.47112 * 25.97249 * 1 2 3 30 30 H 1.09000 * 109.47021 * 145.97706 * 1 2 3 31 31 H 1.07999 * 121.08531 * 0.02562 * 3 2 1 32 32 H 1.08997 * 109.47611 * 299.99538 * 10 9 7 33 33 H 1.08994 * 109.47595 * 60.00317 * 10 9 7 34 34 H 1.08997 * 109.47096 * 299.99683 * 11 10 9 35 35 H 1.08998 * 109.46949 * 60.00169 * 11 10 9 36 36 H 0.97001 * 119.99382 * 179.97438 * 15 14 12 37 37 H 1.07998 * 120.03694 * 0.25531 * 23 22 21 38 38 H 1.07994 * 119.96054 * 179.97438 * 24 23 22 39 39 H 1.08003 * 119.92870 * 180.02562 * 25 24 23 40 40 H 1.07994 * 119.96177 * 179.97438 * 26 25 24 41 41 H 1.08007 * 120.03214 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1755 1.1776 0.0000 4 6 3.5940 1.1343 -0.0056 5 8 4.2618 2.1566 -0.0109 6 6 4.2262 -0.1946 -0.0053 7 6 5.6955 -0.3280 -0.0103 8 8 6.3956 0.6649 -0.0152 9 8 6.2609 -1.5512 -0.0095 10 6 7.7118 -1.6066 -0.0140 11 6 8.1664 -3.0676 -0.0130 12 6 9.6723 -3.1251 -0.0183 13 1 10.2476 -2.2111 -0.0217 14 6 10.3156 -4.3446 -0.0189 15 7 9.6150 -5.4576 -0.0143 16 14 12.1822 -4.4159 -0.0248 17 1 12.7075 -3.7338 1.1851 18 1 12.6234 -5.8338 -0.0239 19 1 12.6996 -3.7367 -1.2398 20 7 3.4555 -1.2625 0.0005 21 7 2.1764 -1.1793 0.0055 22 6 1.4336 -2.3646 0.0110 23 6 1.7683 -3.3999 -0.8528 24 6 1.0332 -4.5689 -0.8445 25 6 -0.0347 -4.7099 0.0228 26 6 -0.3708 -3.6811 0.8838 27 6 0.3599 -2.5093 0.8804 28 1 -0.3633 -0.0720 1.0252 29 1 -0.3633 0.9238 -0.4500 30 1 -0.3633 -0.8517 -0.5750 31 1 1.6464 2.1191 0.0004 32 1 8.0917 -1.1090 -0.9063 33 1 8.0974 -1.1051 0.8736 34 1 7.7866 -3.5656 0.8791 35 1 7.7809 -3.5686 -0.9009 36 1 10.0676 -6.3155 -0.0151 37 1 2.6052 -3.2923 -1.5269 38 1 1.2926 -5.3740 -1.5160 39 1 -0.6077 -5.6254 0.0277 40 1 -1.2056 -3.7943 1.5596 41 1 0.0966 -1.7061 1.5527 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000913242799.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:34 Heat of formation + Delta-G solvation = -17.896019 kcal Electronic energy + Delta-G solvation = -26734.434469 eV Core-core repulsion = 22774.565052 eV Total energy + Delta-G solvation = -3959.869417 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = -0.40 seconds Orbital eigenvalues (eV) -42.61251 -39.99702 -39.22949 -38.15855 -35.89617 -35.19616 -33.63474 -33.26669 -31.55718 -30.46156 -29.82277 -28.79548 -26.31595 -24.88118 -23.75995 -23.11146 -22.45255 -21.60857 -20.70733 -19.03976 -18.84536 -17.10107 -16.89592 -16.78965 -16.29970 -16.14948 -15.81269 -15.78432 -15.07681 -14.81501 -14.51086 -14.33270 -14.19726 -14.04414 -13.64423 -13.54220 -13.31901 -13.09169 -12.82216 -12.74201 -12.31854 -12.11743 -11.78886 -11.53257 -11.19229 -11.02370 -10.71333 -10.70692 -10.54897 -10.42829 -9.74425 -9.69284 -9.57461 -9.49430 -9.38126 -9.24905 -8.40307 -8.35728 -6.06573 -4.10495 0.26225 0.38356 0.82603 1.04492 1.60983 2.62515 2.87792 3.14748 3.33505 3.36776 3.40692 3.46809 3.79030 3.97287 4.07666 4.31054 4.37542 4.43817 4.45770 4.60899 4.78410 4.84992 4.92298 4.96776 5.07251 5.23337 5.29506 5.29967 5.42145 5.47359 5.68237 5.78899 5.79789 5.98276 6.04656 6.14837 6.16066 6.42357 6.69250 6.94242 7.44306 7.60351 7.61928 7.67853 7.91122 8.22328 8.30437 8.94814 9.53435 11.04930 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.011988 B = 0.003081 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.039551 B = 9086.664752 C =11246.926284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.130 3.870 3 C -0.258 4.258 4 C 0.385 3.615 5 O -0.451 6.451 6 C -0.020 4.020 7 C 0.527 3.473 8 O -0.475 6.475 9 O -0.341 6.341 10 C 0.074 3.926 11 C 0.027 3.973 12 C -0.526 4.526 13 H 0.059 0.941 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.900 3.100 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.275 1.275 20 N -0.137 5.137 21 N -0.265 5.265 22 C 0.112 3.888 23 C -0.088 4.088 24 C -0.102 4.102 25 C -0.106 4.106 26 C -0.106 4.106 27 C -0.116 4.116 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.169 0.831 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.263 0.737 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.132 0.868 40 H 0.135 0.865 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.368 3.604 -0.069 29.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.022 3.978 3 C -0.284 4.284 4 C 0.266 3.734 5 O -0.326 6.326 6 C -0.195 4.195 7 C 0.367 3.633 8 O -0.359 6.359 9 O -0.257 6.257 10 C 0.001 3.999 11 C -0.011 4.011 12 C -0.564 4.564 13 H 0.078 0.922 14 C -0.141 4.141 15 N -0.529 5.529 16 Si 0.727 3.273 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 N 0.034 4.966 21 N -0.058 5.058 22 C 0.023 3.977 23 C -0.108 4.108 24 C -0.120 4.120 25 C -0.124 4.124 26 C -0.125 4.125 27 C -0.136 4.136 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.187 0.813 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.073 0.927 37 H 0.157 0.843 38 H 0.155 0.845 39 H 0.150 0.850 40 H 0.153 0.847 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -28.612 3.330 -0.072 28.805 hybrid contribution 1.052 0.648 0.042 1.236 sum -27.561 3.978 -0.030 27.846 Atomic orbital electron populations 1.21394 0.87011 1.05568 1.04511 1.21472 0.96522 0.85596 0.94172 1.22512 0.95001 0.97865 1.13007 1.18746 0.89231 0.87811 0.77630 1.90883 1.66763 1.35033 1.39966 1.24402 0.92815 0.91760 1.10538 1.19686 0.85798 0.83054 0.74804 1.90915 1.61936 1.38874 1.44148 1.86668 1.27511 1.29043 1.82453 1.23743 0.71959 1.02952 1.01223 1.19157 0.95829 0.87150 0.98918 1.20959 0.90536 0.92769 1.52133 0.92240 1.24974 0.98752 0.95494 0.94895 1.69969 1.35614 0.97473 1.49852 0.86530 0.84967 0.76978 0.78816 1.20059 1.21162 1.20055 1.71654 0.90656 1.30358 1.03940 1.41733 1.01393 1.05214 1.57442 1.17620 0.94539 0.85558 1.00023 1.21241 0.99744 0.92479 0.97297 1.21184 0.94794 0.96972 0.99063 1.21402 0.96885 0.99042 0.95118 1.21032 0.99932 0.92305 0.99222 1.21239 0.95589 0.99342 0.97457 0.88655 0.88552 0.89267 0.81346 0.92046 0.92053 0.95301 0.95308 0.92721 0.84274 0.84454 0.85018 0.84684 0.84598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.51 8.19 36.01 0.29 -0.22 16 2 C 0.13 1.16 6.50 -81.93 -0.53 0.63 16 3 C -0.26 -2.84 9.73 -39.18 -0.38 -3.22 16 4 C 0.38 6.31 6.99 -34.55 -0.24 6.07 16 5 O -0.45 -9.07 16.44 -15.17 -0.25 -9.32 16 6 C -0.02 -0.34 7.04 -80.51 -0.57 -0.91 16 7 C 0.53 11.11 7.95 34.52 0.27 11.38 16 8 O -0.48 -11.18 15.36 -26.03 -0.40 -11.58 16 9 O -0.34 -7.57 10.06 -40.63 -0.41 -7.98 16 10 C 0.07 1.74 5.41 37.16 0.20 1.94 16 11 C 0.03 0.72 5.35 -27.88 -0.15 0.57 16 12 C -0.53 -15.14 9.11 -34.44 -0.31 -15.45 16 13 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 14 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 15 N -0.89 -26.68 13.29 55.43 0.74 -25.95 16 16 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 20 N -0.14 -2.09 10.26 34.58 0.35 -1.73 16 21 N -0.26 -3.00 3.40 -6.91 -0.02 -3.02 16 22 C 0.11 1.03 5.12 -83.68 -0.43 0.60 16 23 C -0.09 -0.81 9.60 -39.38 -0.38 -1.19 16 24 C -0.10 -0.71 10.04 -39.61 -0.40 -1.11 16 25 C -0.11 -0.57 10.04 -39.54 -0.40 -0.97 16 26 C -0.11 -0.53 10.04 -39.61 -0.40 -0.92 16 27 C -0.12 -0.73 7.54 -39.38 -0.30 -1.03 16 28 H 0.10 0.21 6.69 -51.93 -0.35 -0.14 16 29 H 0.10 0.23 8.04 -51.93 -0.42 -0.19 16 30 H 0.09 0.33 6.35 -51.93 -0.33 0.00 16 31 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.14 1.43 8.01 -52.49 -0.42 1.01 16 38 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.13 0.42 8.06 -52.48 -0.42 -0.01 16 40 H 0.14 0.33 8.06 -52.49 -0.42 -0.10 16 41 H 0.14 0.59 5.86 -52.48 -0.31 0.28 16 LS Contribution 359.54 15.07 5.42 5.42 Total: -1.00 -36.88 359.54 -8.15 -45.03 By element: Atomic # 1 Polarization: -0.72 SS G_CDS: -4.75 Total: -5.47 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -3.81 Total: -2.16 kcal Atomic # 7 Polarization: -31.76 SS G_CDS: 1.07 Total: -30.70 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -1.06 Total: -28.88 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.88 -8.15 -45.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913242799.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.133 kcal (2) G-P(sol) polarization free energy of solvation -36.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.40 seconds