Wall clock time and date at job start Tue Mar 31 2020 14:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35409 * 119.58038 * 2 1 4 4 C 1.41920 * 117.83122 * 180.25415 * 3 2 1 5 5 O 1.22111 * 121.40640 * 179.72813 * 4 3 2 6 6 C 1.47164 * 117.19157 * 359.75376 * 4 3 2 7 7 C 1.47529 * 120.63043 * 180.02562 * 6 4 3 8 8 O 1.21489 * 120.00105 * 359.97438 * 7 6 4 9 9 O 1.34750 * 119.99636 * 179.97438 * 7 6 4 10 10 C 1.45201 * 116.99517 * 180.02562 * 9 7 6 11 11 C 1.53010 * 109.46993 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47108 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00120 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99951 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99631 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99835 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47108 * 60.00088 * 16 14 12 18 18 H 1.48496 * 109.46758 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46930 * 300.00040 * 16 14 12 20 20 N 1.31700 * 118.73902 * 359.97438 * 6 4 3 21 21 N 1.28180 * 122.09407 * 0.02562 * 20 6 4 22 22 C 1.39884 * 118.35052 * 179.97438 * 21 20 6 23 23 C 1.38925 * 120.07307 * 314.01186 * 22 21 20 24 24 C 1.38098 * 119.92491 * 179.97438 * 23 22 21 25 25 C 1.38295 * 120.07518 * 359.97438 * 24 23 22 26 26 C 1.38303 * 120.14936 * 0.04351 * 25 24 23 27 27 C 1.38096 * 120.07118 * 359.97401 * 26 25 24 28 28 H 1.09005 * 109.46840 * 265.98078 * 1 2 3 29 29 H 1.08993 * 109.47112 * 25.97249 * 1 2 3 30 30 H 1.09000 * 109.47021 * 145.97706 * 1 2 3 31 31 H 1.07999 * 121.08531 * 0.02562 * 3 2 1 32 32 H 1.08997 * 109.47611 * 299.99538 * 10 9 7 33 33 H 1.08994 * 109.47595 * 60.00317 * 10 9 7 34 34 H 1.08997 * 109.47096 * 299.99683 * 11 10 9 35 35 H 1.08998 * 109.46949 * 60.00169 * 11 10 9 36 36 H 0.97001 * 119.99382 * 179.97438 * 15 14 12 37 37 H 1.07998 * 120.03694 * 0.25531 * 23 22 21 38 38 H 1.07994 * 119.96054 * 179.97438 * 24 23 22 39 39 H 1.08003 * 119.92870 * 180.02562 * 25 24 23 40 40 H 1.07994 * 119.96177 * 179.97438 * 26 25 24 41 41 H 1.08007 * 120.03214 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1755 1.1776 0.0000 4 6 3.5940 1.1343 -0.0056 5 8 4.2618 2.1566 -0.0109 6 6 4.2262 -0.1946 -0.0053 7 6 5.6955 -0.3280 -0.0103 8 8 6.3956 0.6649 -0.0152 9 8 6.2609 -1.5512 -0.0095 10 6 7.7118 -1.6066 -0.0140 11 6 8.1664 -3.0676 -0.0130 12 6 9.6723 -3.1251 -0.0183 13 1 10.2476 -2.2111 -0.0217 14 6 10.3156 -4.3446 -0.0189 15 7 9.6150 -5.4576 -0.0143 16 14 12.1822 -4.4159 -0.0248 17 1 12.7075 -3.7338 1.1851 18 1 12.6234 -5.8338 -0.0239 19 1 12.6996 -3.7367 -1.2398 20 7 3.4555 -1.2625 0.0005 21 7 2.1764 -1.1793 0.0055 22 6 1.4336 -2.3646 0.0110 23 6 1.7683 -3.3999 -0.8528 24 6 1.0332 -4.5689 -0.8445 25 6 -0.0347 -4.7099 0.0228 26 6 -0.3708 -3.6811 0.8838 27 6 0.3599 -2.5093 0.8804 28 1 -0.3633 -0.0720 1.0252 29 1 -0.3633 0.9238 -0.4500 30 1 -0.3633 -0.8517 -0.5750 31 1 1.6464 2.1191 0.0004 32 1 8.0917 -1.1090 -0.9063 33 1 8.0974 -1.1051 0.8736 34 1 7.7866 -3.5656 0.8791 35 1 7.7809 -3.5686 -0.9009 36 1 10.0676 -6.3155 -0.0151 37 1 2.6052 -3.2923 -1.5269 38 1 1.2926 -5.3740 -1.5160 39 1 -0.6077 -5.6254 0.0277 40 1 -1.2056 -3.7943 1.5596 41 1 0.0966 -1.7061 1.5527 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000913242799.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:32 Heat of formation + Delta-G solvation = -40.259502 kcal Electronic energy + Delta-G solvation = -26735.404223 eV Core-core repulsion = 22774.565052 eV Total energy + Delta-G solvation = -3960.839171 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.60988 -41.50453 -40.22492 -39.22895 -37.68932 -36.11104 -35.46530 -34.51438 -32.45300 -32.07208 -30.81985 -29.48784 -27.66428 -26.73253 -24.49273 -24.11421 -23.40589 -22.92912 -22.51094 -20.22849 -19.87133 -18.67544 -18.06200 -17.92049 -17.71865 -17.37028 -17.36003 -17.18881 -16.53010 -15.87557 -15.44812 -15.30163 -15.11620 -14.97033 -14.67394 -14.61356 -14.39056 -14.32673 -14.02142 -13.92436 -13.32411 -13.21220 -13.11865 -12.88274 -12.65462 -12.62579 -12.45329 -12.17675 -12.14422 -11.71412 -11.57302 -11.49428 -11.41646 -10.69142 -10.63089 -10.35509 -10.00556 -9.31486 -8.28811 -6.42529 -0.90485 -0.46248 0.23604 0.32505 0.68252 1.16345 1.35769 1.42948 1.43819 1.53004 2.19585 2.37414 2.56264 2.83731 3.00507 3.05097 3.17864 3.70779 3.73399 3.82680 3.87744 4.14570 4.16360 4.18211 4.22639 4.39470 4.40068 4.51592 4.59678 4.62178 4.71054 4.80923 4.97964 5.03502 5.09861 5.18020 5.26145 5.38953 5.41178 5.43423 5.49866 5.68946 5.88782 6.02983 6.29061 6.46070 6.58501 6.69810 7.26831 8.83826 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.011988 B = 0.003081 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.039551 B = 9086.664752 C =11246.926284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.145 3.855 3 C -0.253 4.253 4 C 0.374 3.626 5 O -0.513 6.513 6 C -0.069 4.069 7 C 0.526 3.474 8 O -0.510 6.510 9 O -0.349 6.349 10 C 0.087 3.913 11 C 0.036 3.964 12 C -0.554 4.554 13 H 0.064 0.936 14 C 0.008 3.992 15 N -0.925 5.925 16 Si 0.975 3.025 17 H -0.266 1.266 18 H -0.276 1.276 19 H -0.266 1.266 20 N -0.139 5.139 21 N -0.243 5.243 22 C 0.073 3.927 23 C -0.111 4.111 24 C -0.112 4.112 25 C -0.095 4.095 26 C -0.097 4.097 27 C -0.103 4.103 28 H 0.128 0.872 29 H 0.123 0.877 30 H 0.099 0.901 31 H 0.204 0.796 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.007 0.993 35 H 0.008 0.992 36 H 0.269 0.731 37 H 0.112 0.888 38 H 0.146 0.854 39 H 0.161 0.839 40 H 0.174 0.826 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.232 2.710 0.869 33.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.037 3.963 3 C -0.278 4.278 4 C 0.261 3.739 5 O -0.394 6.394 6 C -0.239 4.239 7 C 0.369 3.631 8 O -0.396 6.396 9 O -0.264 6.264 10 C 0.014 3.986 11 C -0.001 4.001 12 C -0.591 4.591 13 H 0.083 0.917 14 C -0.191 4.191 15 N -0.564 5.564 16 Si 0.799 3.201 17 H -0.191 1.191 18 H -0.201 1.201 19 H -0.191 1.191 20 N 0.028 4.972 21 N -0.038 5.038 22 C -0.015 4.015 23 C -0.131 4.131 24 C -0.131 4.131 25 C -0.113 4.113 26 C -0.115 4.115 27 C -0.123 4.123 28 H 0.146 0.854 29 H 0.141 0.859 30 H 0.118 0.882 31 H 0.221 0.779 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.025 0.975 35 H 0.026 0.974 36 H 0.078 0.922 37 H 0.131 0.869 38 H 0.164 0.836 39 H 0.179 0.821 40 H 0.191 0.809 41 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -32.501 2.418 0.862 32.602 hybrid contribution 1.865 0.638 -0.251 1.987 sum -30.635 3.055 0.611 30.794 Atomic orbital electron populations 1.21691 0.82141 1.07508 1.06900 1.22297 0.99110 0.83737 0.91120 1.22662 0.91972 1.00242 1.12926 1.19291 0.91378 0.86428 0.76836 1.90846 1.68169 1.36100 1.44333 1.23971 0.90878 0.93220 1.15827 1.20291 0.87526 0.81847 0.73476 1.90869 1.63214 1.39443 1.46039 1.86654 1.26404 1.30391 1.82961 1.23343 0.73312 1.00703 1.01268 1.18951 0.95669 0.88718 0.96751 1.21328 0.91349 0.93486 1.52971 0.91733 1.25971 1.04438 0.94833 0.93889 1.70091 1.37997 0.98199 1.50100 0.85349 0.77975 0.77508 0.79308 1.19103 1.20126 1.19085 1.71521 0.92937 1.30191 1.02505 1.42271 1.00274 1.07440 1.53807 1.18006 0.96066 0.85012 1.02386 1.21226 0.99942 0.93946 0.98004 1.21380 0.95364 0.96311 1.00026 1.21826 0.95642 1.00273 0.93590 1.21513 1.00150 0.91036 0.98836 1.21567 0.93748 1.00674 0.96299 0.85415 0.85885 0.88222 0.77899 0.91965 0.91983 0.97466 0.97403 0.92223 0.86938 0.83635 0.82141 0.80892 0.81911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.33 8.19 71.24 0.58 0.25 16 2 C 0.15 2.22 6.50 41.32 0.27 2.49 16 3 C -0.25 -5.23 9.73 22.53 0.22 -5.01 16 4 C 0.37 12.96 6.99 25.53 0.18 13.14 16 5 O -0.51 -22.24 16.44 13.43 0.22 -22.02 16 6 C -0.07 -2.59 7.04 43.96 0.31 -2.28 16 7 C 0.53 24.21 7.95 70.27 0.56 24.77 16 8 O -0.51 -26.13 15.36 26.35 0.40 -25.73 16 9 O -0.35 -16.76 10.06 -56.60 -0.57 -17.33 16 10 C 0.09 4.39 5.41 71.99 0.39 4.78 16 11 C 0.04 2.08 5.35 29.85 0.16 2.24 16 12 C -0.55 -32.91 9.11 25.60 0.23 -32.68 16 13 H 0.06 3.68 7.74 -2.91 -0.02 3.66 16 14 C 0.01 0.46 5.46 84.66 0.46 0.92 16 15 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 16 Si 0.98 44.96 29.54 68.60 2.03 46.99 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 N -0.14 -4.44 10.26 -44.52 -0.46 -4.89 16 21 N -0.24 -5.29 3.40 -175.79 -0.60 -5.89 16 22 C 0.07 1.21 5.12 38.18 0.20 1.40 16 23 C -0.11 -2.05 9.60 22.40 0.21 -1.83 16 24 C -0.11 -1.39 10.04 22.25 0.22 -1.16 16 25 C -0.10 -0.63 10.04 22.30 0.22 -0.41 16 26 C -0.10 -0.44 10.04 22.25 0.22 -0.21 16 27 C -0.10 -0.83 7.54 22.40 0.17 -0.66 16 28 H 0.13 -0.33 6.69 -2.38 -0.02 -0.34 16 29 H 0.12 -0.16 8.04 -2.39 -0.02 -0.18 16 30 H 0.10 0.19 6.35 -2.39 -0.02 0.18 16 31 H 0.20 2.70 8.06 -2.91 -0.02 2.67 16 32 H 0.06 3.10 8.14 -2.39 -0.02 3.08 16 33 H 0.06 3.10 8.14 -2.39 -0.02 3.08 16 34 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 37 H 0.11 2.58 8.01 -2.91 -0.02 2.55 16 38 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 39 H 0.16 0.19 8.06 -2.91 -0.02 0.16 16 40 H 0.17 -0.41 8.06 -2.91 -0.02 -0.43 16 41 H 0.16 0.41 5.86 -2.91 -0.02 0.39 16 Total: -1.00 -88.59 359.54 6.99 -81.60 By element: Atomic # 1 Polarization: -3.23 SS G_CDS: 1.07 Total: -2.16 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 4.61 Total: 5.77 kcal Atomic # 7 Polarization: -66.34 SS G_CDS: -0.77 Total: -67.11 kcal Atomic # 8 Polarization: -65.14 SS G_CDS: 0.06 Total: -65.08 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -88.59 6.99 -81.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913242799.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.345 kcal (2) G-P(sol) polarization free energy of solvation -88.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds