Wall clock time and date at job start Tue Mar 31 2020 16:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47210 * 2 1 4 4 O 1.45195 * 109.47097 * 120.00632 * 2 1 3 5 5 C 1.34807 * 117.00130 * 269.99776 * 4 2 1 6 6 O 1.21534 * 119.99687 * 359.97438 * 5 4 2 7 7 C 1.47278 * 120.00172 * 179.97438 * 5 4 2 8 8 C 1.39292 * 120.29182 * 354.21049 * 7 5 4 9 9 C 1.38200 * 120.09263 * 180.27758 * 8 7 5 10 10 C 1.38841 * 120.67601 * 359.48306 * 9 8 7 11 11 C 1.37593 * 120.58610 * 0.51868 * 10 9 8 12 12 C 1.40714 * 119.88536 * 359.74368 * 11 10 9 13 13 C 1.40863 * 120.32859 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99991 * 145.83262 * 13 12 11 15 15 C 1.40293 * 120.00064 * 325.83092 * 13 12 11 16 16 N 1.30615 * 120.00007 * 350.76255 * 15 13 12 17 17 Si 1.86804 * 119.99694 * 170.76024 * 15 13 12 18 18 H 1.48495 * 109.47157 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46975 * 120.00363 * 17 15 13 20 20 H 1.48506 * 109.47018 * 240.00047 * 17 15 13 21 21 C 1.50701 * 109.46464 * 240.00230 * 2 1 3 22 22 N 1.31134 * 126.54913 * 104.71900 * 21 2 1 23 23 C 1.34490 * 105.61577 * 179.90946 * 22 21 2 24 24 C 1.50703 * 126.29038 * 180.12130 * 23 22 21 25 25 C 1.52995 * 117.50280 * 188.86464 * 24 23 22 26 26 C 1.53001 * 117.49868 * 120.23855 * 24 23 22 27 27 N 1.29951 * 107.42467 * 0.35267 * 23 22 21 28 28 O 1.21298 * 110.24969 * 359.77475 * 27 23 22 29 29 H 1.09004 * 109.46662 * 299.99609 * 1 2 3 30 30 H 1.08996 * 109.47112 * 59.99183 * 1 2 3 31 31 H 1.09002 * 109.47192 * 179.97438 * 1 2 3 32 32 H 1.08004 * 119.95438 * 359.97438 * 8 7 5 33 33 H 1.07997 * 119.66244 * 179.74343 * 9 8 7 34 34 H 1.08004 * 119.70271 * 180.28711 * 10 9 8 35 35 H 1.08004 * 120.05752 * 179.77165 * 11 10 9 36 36 H 0.97008 * 119.99787 * 179.97438 * 16 15 13 37 37 H 1.09000 * 115.54592 * 334.57433 * 24 23 22 38 38 H 1.09008 * 117.49578 * 0.02562 * 25 24 23 39 39 H 1.08995 * 117.49879 * 145.02152 * 25 24 23 40 40 H 1.08999 * 117.49882 * 214.98440 * 26 24 23 41 41 H 1.09001 * 117.49218 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 1.1854 5 6 2.2181 0.0670 2.2858 6 8 1.9979 1.2618 2.2549 7 6 2.7078 -0.5598 3.5253 8 6 2.8476 -1.9434 3.6053 9 6 3.3021 -2.5277 4.7723 10 6 3.6342 -1.7480 5.8721 11 6 3.5067 -0.3788 5.8238 12 6 3.0412 0.2410 4.6495 13 6 2.9077 1.6420 4.5896 14 1 3.0965 2.1634 3.6628 15 6 2.5294 2.3602 5.7339 16 7 2.1270 1.7236 6.8011 17 14 2.6013 4.2268 5.7312 18 1 3.0867 4.7016 4.4105 19 1 1.2447 4.7748 5.9856 20 1 3.5290 4.6880 6.7951 21 6 2.0322 -0.7104 -1.2305 22 7 2.5448 -0.1515 -2.3004 23 6 2.8502 -1.1666 -3.1281 24 6 3.4709 -1.0462 -4.4961 25 6 3.5435 -2.3116 -5.3529 26 6 4.8158 -1.7388 -4.7250 27 7 2.5070 -2.2701 -2.5337 28 8 2.0351 -2.0299 -1.4424 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 2.5958 -2.5608 2.7556 33 1 3.4039 -3.6014 4.8280 34 1 3.9922 -2.2208 6.7748 35 1 3.7641 0.2191 6.6856 36 1 1.8658 2.2202 7.5924 37 1 3.2984 -0.1000 -5.0089 38 1 3.1419 -3.2313 -4.9272 39 1 3.4187 -2.1982 -6.4297 40 1 5.5279 -1.2485 -5.3888 41 1 5.2517 -2.2812 -3.8860 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919034307.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:37 Heat of formation + Delta-G solvation = 30.903158 kcal Electronic energy + Delta-G solvation = -26946.770488 eV Core-core repulsion = 22989.017162 eV Total energy + Delta-G solvation = -3957.753326 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.77 seconds Orbital eigenvalues (eV) -45.65307 -39.74869 -37.93935 -37.51214 -35.93541 -35.34553 -33.86119 -33.05833 -30.73579 -30.05534 -29.59021 -25.77551 -25.50374 -24.99033 -23.32783 -22.73470 -22.41799 -21.17634 -20.34311 -19.63779 -18.11754 -17.88227 -17.54256 -16.87175 -16.25644 -15.83594 -15.49601 -15.18628 -14.99872 -14.64549 -14.22255 -13.67250 -13.22209 -12.98767 -12.90568 -12.79665 -12.59222 -12.43225 -12.29660 -12.00832 -11.89607 -11.76223 -11.46099 -11.23476 -11.19672 -11.07051 -10.94740 -10.86865 -10.77030 -10.68476 -10.31914 -10.25916 -9.82624 -9.77277 -9.42196 -8.95204 -7.73614 -7.51477 -6.96134 -4.57531 0.99328 1.98123 2.09036 2.64928 2.72400 2.94920 3.02836 3.11499 3.14066 3.48922 3.55393 3.75014 3.86101 4.04948 4.45113 4.50524 4.52271 4.59439 4.86944 5.04351 5.13610 5.26726 5.36797 5.44151 5.47255 5.58812 5.68051 5.72985 5.74569 5.83941 6.00787 6.07451 6.11783 6.28571 6.47681 6.84118 6.96396 7.05508 7.10207 7.36435 7.54276 7.81604 7.85890 8.05522 8.07606 8.47714 8.62255 8.69353 8.88711 9.98156 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.016120 B = 0.003005 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.526970 B = 9316.919400 C =10194.750807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.181 3.819 3 H 0.129 0.871 4 O -0.358 6.358 5 C 0.508 3.492 6 O -0.508 6.508 7 C -0.251 4.251 8 C -0.036 4.036 9 C -0.246 4.246 10 C -0.089 4.089 11 C -0.147 4.147 12 C 0.148 3.852 13 C -0.415 4.415 14 H 0.106 0.894 15 C 0.070 3.930 16 N -0.783 5.783 17 Si 0.918 3.082 18 H -0.255 1.255 19 H -0.272 1.272 20 H -0.272 1.272 21 C 0.200 3.800 22 N -0.471 5.471 23 C 0.198 3.802 24 C -0.078 4.078 25 C -0.159 4.159 26 C -0.157 4.157 27 N -0.384 5.384 28 O 0.095 5.905 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.120 0.880 36 H 0.285 0.715 37 H 0.136 0.864 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.123 -3.667 -14.471 14.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.123 3.877 3 H 0.146 0.854 4 O -0.277 6.277 5 C 0.359 3.641 6 O -0.397 6.397 7 C -0.254 4.254 8 C -0.055 4.055 9 C -0.265 4.265 10 C -0.108 4.108 11 C -0.166 4.166 12 C 0.144 3.856 13 C -0.442 4.442 14 H 0.124 0.876 15 C -0.150 4.150 16 N -0.407 5.407 17 Si 0.742 3.258 18 H -0.179 1.179 19 H -0.197 1.197 20 H -0.197 1.197 21 C -0.021 4.021 22 N -0.205 5.205 23 C -0.074 4.074 24 C -0.098 4.098 25 C -0.197 4.197 26 C -0.195 4.195 27 N -0.091 5.091 28 O 0.036 5.964 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.122 0.878 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.138 0.862 36 H 0.096 0.904 37 H 0.154 0.846 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.182 -3.708 -14.863 15.319 hybrid contribution -0.205 0.858 0.296 0.931 sum -0.023 -2.850 -14.567 14.843 Atomic orbital electron populations 1.22224 0.91497 1.04111 1.04466 1.20590 0.94959 0.95349 0.76818 0.85392 1.86739 1.78849 1.42619 1.19490 1.21491 0.75061 0.85103 0.82400 1.90757 1.50258 1.15751 1.82971 1.18659 1.20486 0.92990 0.93217 1.20853 0.94829 0.93383 0.96426 1.20377 1.13348 0.97759 0.94992 1.20879 0.98765 0.94440 0.96700 1.21315 1.03031 0.93253 0.99035 1.17450 0.86068 0.93029 0.89050 1.20266 1.34887 0.91831 0.97214 0.87584 1.26160 0.92570 1.02075 0.94175 1.69708 1.28940 1.38895 1.03171 0.86078 0.78872 0.81085 0.79789 1.17876 1.19687 1.19678 1.28485 0.95257 0.81209 0.97110 1.71819 1.16338 1.30564 1.01792 1.24775 1.00410 0.83707 0.98525 1.20052 1.01445 0.99698 0.88563 1.23082 1.01097 0.96358 0.99122 1.23093 0.90294 1.02591 1.03518 1.74572 1.15806 1.23854 0.94820 1.85350 1.57726 1.26751 1.26612 0.89257 0.90490 0.90797 0.87839 0.88697 0.88763 0.86179 0.90399 0.84608 0.87777 0.87441 0.87296 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.53 37.16 0.35 -1.80 16 2 C 0.18 2.88 3.12 -27.88 -0.09 2.80 16 3 H 0.13 2.11 7.16 -51.93 -0.37 1.74 16 4 O -0.36 -6.87 9.13 -41.68 -0.38 -7.25 16 5 C 0.51 11.48 7.82 34.41 0.27 11.75 16 6 O -0.51 -12.22 12.85 -19.29 -0.25 -12.47 16 7 C -0.25 -6.03 5.92 -104.39 -0.62 -6.65 16 8 C -0.04 -0.79 9.60 -39.20 -0.38 -1.17 16 9 C -0.25 -5.16 10.03 -39.37 -0.39 -5.55 16 10 C -0.09 -1.94 10.01 -39.59 -0.40 -2.33 16 11 C -0.15 -3.58 8.62 -38.88 -0.34 -3.92 16 12 C 0.15 3.81 5.51 -106.53 -0.59 3.22 16 13 C -0.41 -10.77 7.68 -37.82 -0.29 -11.06 16 14 H 0.11 2.83 5.92 -52.49 -0.31 2.52 16 15 C 0.07 1.70 5.25 -17.30 -0.09 1.61 16 16 N -0.78 -19.21 11.14 55.57 0.62 -18.59 16 17 Si 0.92 18.52 29.57 -169.99 -5.03 13.50 16 18 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 19 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 20 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 21 C 0.20 3.14 7.41 -13.05 -0.10 3.04 16 22 N -0.47 -7.35 11.55 -9.87 -0.11 -7.47 16 23 C 0.20 2.82 7.74 -156.37 -1.21 1.61 16 24 C -0.08 -0.81 6.33 -91.77 -0.58 -1.39 16 25 C -0.16 -1.31 10.14 -26.73 -0.27 -1.58 16 26 C -0.16 -1.34 10.23 -26.73 -0.27 -1.62 16 27 N -0.38 -5.85 11.77 30.90 0.36 -5.49 16 28 O 0.09 1.51 11.31 18.09 0.20 1.71 16 29 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.10 2.03 7.62 -52.48 -0.40 1.63 16 33 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 35 H 0.12 2.96 6.60 -52.48 -0.35 2.61 16 36 H 0.28 6.30 8.29 -40.82 -0.34 5.97 16 37 H 0.14 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.10 0.97 7.91 -51.92 -0.41 0.56 16 39 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 360.21 15.07 5.43 5.43 Total: -1.00 -28.27 360.21 -8.92 -37.19 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -4.78 Total: 6.48 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -4.99 Total: -13.05 kcal Atomic # 7 Polarization: -32.41 SS G_CDS: 0.87 Total: -31.55 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.42 Total: -18.00 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.27 -8.92 -37.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919034307.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.094 kcal (2) G-P(sol) polarization free energy of solvation -28.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.77 seconds