Wall clock time and date at job start Tue Mar 31 2020 16:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47210 * 2 1 4 4 O 1.45195 * 109.47097 * 120.00632 * 2 1 3 5 5 C 1.34807 * 117.00130 * 269.99776 * 4 2 1 6 6 O 1.21534 * 119.99687 * 359.97438 * 5 4 2 7 7 C 1.47278 * 120.00172 * 179.97438 * 5 4 2 8 8 C 1.39292 * 120.29182 * 354.21049 * 7 5 4 9 9 C 1.38200 * 120.09263 * 180.27758 * 8 7 5 10 10 C 1.38841 * 120.67601 * 359.48306 * 9 8 7 11 11 C 1.37593 * 120.58610 * 0.51868 * 10 9 8 12 12 C 1.40714 * 119.88536 * 359.74368 * 11 10 9 13 13 C 1.40863 * 120.32859 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99991 * 145.83262 * 13 12 11 15 15 C 1.40293 * 120.00064 * 325.83092 * 13 12 11 16 16 N 1.30615 * 120.00007 * 350.76255 * 15 13 12 17 17 Si 1.86804 * 119.99694 * 170.76024 * 15 13 12 18 18 H 1.48495 * 109.47157 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46975 * 120.00363 * 17 15 13 20 20 H 1.48506 * 109.47018 * 240.00047 * 17 15 13 21 21 C 1.50701 * 109.46464 * 240.00230 * 2 1 3 22 22 N 1.31134 * 126.54913 * 104.71900 * 21 2 1 23 23 C 1.34490 * 105.61577 * 179.90946 * 22 21 2 24 24 C 1.50703 * 126.29038 * 180.12130 * 23 22 21 25 25 C 1.52995 * 117.50280 * 188.86464 * 24 23 22 26 26 C 1.53001 * 117.49868 * 120.23855 * 24 23 22 27 27 N 1.29951 * 107.42467 * 0.35267 * 23 22 21 28 28 O 1.21298 * 110.24969 * 359.77475 * 27 23 22 29 29 H 1.09004 * 109.46662 * 299.99609 * 1 2 3 30 30 H 1.08996 * 109.47112 * 59.99183 * 1 2 3 31 31 H 1.09002 * 109.47192 * 179.97438 * 1 2 3 32 32 H 1.08004 * 119.95438 * 359.97438 * 8 7 5 33 33 H 1.07997 * 119.66244 * 179.74343 * 9 8 7 34 34 H 1.08004 * 119.70271 * 180.28711 * 10 9 8 35 35 H 1.08004 * 120.05752 * 179.77165 * 11 10 9 36 36 H 0.97008 * 119.99787 * 179.97438 * 16 15 13 37 37 H 1.09000 * 115.54592 * 334.57433 * 24 23 22 38 38 H 1.09008 * 117.49578 * 0.02562 * 25 24 23 39 39 H 1.08995 * 117.49879 * 145.02152 * 25 24 23 40 40 H 1.08999 * 117.49882 * 214.98440 * 26 24 23 41 41 H 1.09001 * 117.49218 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 1.1854 5 6 2.2181 0.0670 2.2858 6 8 1.9979 1.2618 2.2549 7 6 2.7078 -0.5598 3.5253 8 6 2.8476 -1.9434 3.6053 9 6 3.3021 -2.5277 4.7723 10 6 3.6342 -1.7480 5.8721 11 6 3.5067 -0.3788 5.8238 12 6 3.0412 0.2410 4.6495 13 6 2.9077 1.6420 4.5896 14 1 3.0965 2.1634 3.6628 15 6 2.5294 2.3602 5.7339 16 7 2.1270 1.7236 6.8011 17 14 2.6013 4.2268 5.7312 18 1 3.0867 4.7016 4.4105 19 1 1.2447 4.7748 5.9856 20 1 3.5290 4.6880 6.7951 21 6 2.0322 -0.7104 -1.2305 22 7 2.5448 -0.1515 -2.3004 23 6 2.8502 -1.1666 -3.1281 24 6 3.4709 -1.0462 -4.4961 25 6 3.5435 -2.3116 -5.3529 26 6 4.8158 -1.7388 -4.7250 27 7 2.5070 -2.2701 -2.5337 28 8 2.0351 -2.0299 -1.4424 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 2.5958 -2.5608 2.7556 33 1 3.4039 -3.6014 4.8280 34 1 3.9922 -2.2208 6.7748 35 1 3.7641 0.2191 6.6856 36 1 1.8658 2.2202 7.5924 37 1 3.2984 -0.1000 -5.0089 38 1 3.1419 -3.2313 -4.9272 39 1 3.4187 -2.1982 -6.4297 40 1 5.5279 -1.2485 -5.3888 41 1 5.2517 -2.2812 -3.8860 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919034307.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:34 Heat of formation + Delta-G solvation = 16.579438 kcal Electronic energy + Delta-G solvation = -26947.391611 eV Core-core repulsion = 22989.017162 eV Total energy + Delta-G solvation = -3958.374449 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -46.83097 -41.42147 -39.23719 -38.74309 -37.54755 -36.56795 -35.64314 -34.34878 -32.14421 -31.72543 -31.26830 -27.54486 -26.53683 -26.26333 -24.80845 -23.75618 -23.38548 -22.91362 -21.75635 -21.05834 -19.44709 -19.30963 -18.96936 -18.53934 -17.62096 -17.20922 -16.79994 -16.75051 -16.38686 -15.91580 -15.51819 -15.32761 -14.76361 -14.55704 -14.44371 -14.14309 -13.94590 -13.54688 -13.44653 -13.30236 -13.22925 -12.98789 -12.87519 -12.63953 -12.54813 -12.53877 -12.37422 -12.27777 -12.10201 -11.97895 -11.75450 -11.57412 -11.54405 -11.19238 -10.84719 -10.74155 -9.52995 -9.33295 -8.74932 -6.46543 -0.23419 0.29577 0.85090 0.98689 1.35614 1.36882 1.49226 1.51856 1.63161 1.97477 2.19689 2.45242 2.69718 2.71342 2.97384 3.47706 3.60785 3.67421 3.72907 3.83714 3.91468 4.08411 4.16910 4.41188 4.44167 4.53534 4.60767 4.61755 4.65523 4.68365 4.84541 4.88516 4.99254 5.01168 5.05902 5.12351 5.17217 5.26162 5.37979 5.57846 5.78828 5.98783 6.06247 6.26770 6.61274 6.76407 6.85636 6.88712 7.12657 8.22091 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.016120 B = 0.003005 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.526970 B = 9316.919400 C =10194.750807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.179 3.821 3 H 0.120 0.880 4 O -0.356 6.356 5 C 0.513 3.487 6 O -0.529 6.529 7 C -0.273 4.273 8 C -0.040 4.040 9 C -0.238 4.238 10 C -0.083 4.083 11 C -0.173 4.173 12 C 0.121 3.879 13 C -0.450 4.450 14 H 0.088 0.912 15 C 0.035 3.965 16 N -0.810 5.810 17 Si 0.981 3.019 18 H -0.266 1.266 19 H -0.265 1.265 20 H -0.255 1.255 21 C 0.198 3.802 22 N -0.482 5.482 23 C 0.200 3.800 24 C -0.102 4.102 25 C -0.143 4.143 26 C -0.150 4.150 27 N -0.395 5.395 28 O 0.083 5.917 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.126 0.874 33 H 0.132 0.868 34 H 0.126 0.874 35 H 0.108 0.892 36 H 0.294 0.706 37 H 0.153 0.847 38 H 0.090 0.910 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.261 -4.564 -15.936 16.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.122 3.878 3 H 0.138 0.862 4 O -0.274 6.274 5 C 0.364 3.636 6 O -0.421 6.421 7 C -0.276 4.276 8 C -0.058 4.058 9 C -0.257 4.257 10 C -0.101 4.101 11 C -0.192 4.192 12 C 0.118 3.882 13 C -0.478 4.478 14 H 0.105 0.895 15 C -0.182 4.182 16 N -0.435 5.435 17 Si 0.801 3.199 18 H -0.190 1.190 19 H -0.189 1.189 20 H -0.179 1.179 21 C -0.023 4.023 22 N -0.218 5.218 23 C -0.072 4.072 24 C -0.122 4.122 25 C -0.181 4.181 26 C -0.188 4.188 27 N -0.104 5.104 28 O 0.027 5.973 29 H 0.097 0.903 30 H 0.121 0.879 31 H 0.104 0.896 32 H 0.143 0.857 33 H 0.150 0.850 34 H 0.144 0.856 35 H 0.126 0.874 36 H 0.105 0.895 37 H 0.171 0.829 38 H 0.109 0.891 39 H 0.156 0.844 40 H 0.154 0.846 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.313 -4.642 -16.313 16.963 hybrid contribution -0.220 0.957 0.612 1.157 sum 0.094 -3.685 -15.701 16.128 Atomic orbital electron populations 1.22220 0.89097 1.05121 1.05172 1.20811 0.96778 0.94621 0.75609 0.86245 1.86662 1.78720 1.42298 1.19722 1.21323 0.74530 0.84788 0.82944 1.90737 1.51024 1.16693 1.83622 1.18999 1.20725 0.94230 0.93650 1.21145 0.94337 0.92615 0.97683 1.20825 1.11301 0.99587 0.94016 1.21252 0.97179 0.93509 0.98172 1.21302 1.04786 0.94526 0.98587 1.17805 0.86566 0.93543 0.90313 1.20248 1.37639 0.92508 0.97410 0.89458 1.26835 0.91780 1.06021 0.93520 1.69721 1.29522 1.40491 1.03754 0.85169 0.79298 0.75914 0.79476 1.19003 1.18920 1.17928 1.28340 0.95500 0.81371 0.97040 1.71844 1.16567 1.31242 1.02120 1.25515 0.99230 0.82902 0.99533 1.20404 1.02930 1.01639 0.87183 1.23182 1.00042 0.94497 1.00355 1.23198 0.90292 1.01943 1.03375 1.74568 1.16703 1.24327 0.94830 1.85331 1.58206 1.26642 1.27147 0.90299 0.87948 0.89634 0.85651 0.85013 0.85629 0.87380 0.89507 0.82923 0.89133 0.84396 0.84557 0.89928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.04 9.53 71.98 0.69 -3.36 16 2 C 0.18 5.74 3.12 29.85 0.09 5.83 16 3 H 0.12 4.06 7.16 -2.39 -0.02 4.04 16 4 O -0.36 -13.77 9.13 -56.33 -0.51 -14.28 16 5 C 0.51 23.78 7.82 70.20 0.55 24.33 16 6 O -0.53 -26.54 12.85 19.72 0.25 -26.29 16 7 C -0.27 -13.38 5.92 -19.72 -0.12 -13.50 16 8 C -0.04 -1.68 9.60 22.51 0.22 -1.46 16 9 C -0.24 -9.45 10.03 22.41 0.22 -9.22 16 10 C -0.08 -3.48 10.01 22.26 0.22 -3.26 16 11 C -0.17 -8.55 8.62 22.72 0.20 -8.36 16 12 C 0.12 6.45 5.51 -21.10 -0.12 6.33 16 13 C -0.45 -24.47 7.68 23.41 0.18 -24.29 16 14 H 0.09 4.93 5.92 -2.91 -0.02 4.92 16 15 C 0.04 1.77 5.25 85.37 0.45 2.22 16 16 N -0.81 -40.70 11.14 21.88 0.24 -40.46 16 17 Si 0.98 38.86 29.57 68.60 2.03 40.89 16 18 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 19 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 20 H -0.26 -9.33 7.11 99.48 0.71 -8.63 16 21 C 0.20 6.17 7.41 88.38 0.65 6.83 16 22 N -0.48 -14.85 11.55 -303.18 -3.50 -18.35 16 23 C 0.20 5.53 7.74 138.46 1.07 6.60 16 24 C -0.10 -1.92 6.33 -11.54 -0.07 -1.99 16 25 C -0.14 -2.00 10.14 30.59 0.31 -1.69 16 26 C -0.15 -2.24 10.23 30.60 0.31 -1.93 16 27 N -0.40 -11.83 11.77 -60.31 -0.71 -12.54 16 28 O 0.08 2.60 11.31 74.85 0.85 3.45 16 29 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 30 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.13 4.69 7.62 -2.91 -0.02 4.67 16 33 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 34 H 0.13 4.43 8.06 -2.91 -0.02 4.40 16 35 H 0.11 5.50 6.60 -2.91 -0.02 5.48 16 36 H 0.29 13.19 8.29 -92.70 -0.77 12.43 16 37 H 0.15 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.09 1.54 7.91 -2.38 -0.02 1.52 16 39 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -63.17 360.21 4.58 -58.59 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 1.07 Total: 25.90 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: 4.86 Total: -16.90 kcal Atomic # 7 Polarization: -67.38 SS G_CDS: -3.97 Total: -71.35 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: 0.59 Total: -37.12 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.89 kcal Total: -63.17 4.58 -58.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919034307.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.165 kcal (2) G-P(sol) polarization free energy of solvation -63.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds