Wall clock time and date at job start Tue Mar 31 2020 16:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47117 * 2 1 4 4 O 1.45201 * 109.47241 * 239.99566 * 2 1 3 5 5 C 1.34702 * 116.99506 * 89.99957 * 4 2 1 6 6 O 1.21463 * 120.00627 * 0.02562 * 5 4 2 7 7 C 1.47777 * 119.99826 * 179.72658 * 5 4 2 8 8 C 1.39970 * 120.02456 * 359.97438 * 7 5 4 9 9 C 1.38319 * 120.34511 * 179.74145 * 8 7 5 10 10 C 1.37754 * 120.42146 * 0.56083 * 9 8 7 11 11 C 1.40753 * 120.05058 * 359.69597 * 10 9 8 12 12 C 1.41440 * 120.17540 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00205 * 334.91920 * 12 11 10 14 14 C 1.39939 * 119.99812 * 154.91931 * 12 11 10 15 15 N 1.30832 * 120.00081 * 342.60141 * 14 12 11 16 16 Si 1.86804 * 119.99873 * 162.60185 * 14 12 11 17 17 H 1.48495 * 109.46963 * 60.00157 * 16 14 12 18 18 H 1.48500 * 109.46836 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47190 * 299.99768 * 16 14 12 20 20 C 1.39048 * 120.03081 * 180.27683 * 7 5 4 21 21 C 1.50705 * 109.47140 * 119.99954 * 2 1 3 22 22 N 1.31129 * 126.54971 * 254.71153 * 21 2 1 23 23 C 1.34496 * 105.61451 * 179.91654 * 22 21 2 24 24 C 1.50704 * 126.28724 * 180.12614 * 23 22 21 25 25 C 1.52991 * 117.49867 * 188.90793 * 24 23 22 26 26 C 1.52991 * 60.00197 * 252.51452 * 25 24 23 27 27 N 1.29939 * 107.42403 * 0.35145 * 23 22 21 28 28 O 1.21297 * 110.25455 * 359.77511 * 27 23 22 29 29 H 1.09004 * 109.47310 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47091 * 300.00030 * 1 2 3 31 31 H 1.08992 * 109.47327 * 60.00323 * 1 2 3 32 32 H 1.07990 * 119.83028 * 0.02796 * 8 7 5 33 33 H 1.08001 * 119.78796 * 180.28222 * 9 8 7 34 34 H 1.07996 * 119.97778 * 179.71964 * 10 9 8 35 35 H 0.96998 * 120.00135 * 179.97438 * 15 14 12 36 36 H 1.07996 * 120.20752 * 359.95145 * 20 7 5 37 37 H 1.08998 * 115.55162 * 334.62122 * 24 23 22 38 38 H 1.09004 * 117.50176 * 0.02562 * 25 24 23 39 39 H 1.09005 * 117.49831 * 145.01939 * 25 24 23 40 40 H 1.09007 * 117.50046 * 252.51315 * 26 25 24 41 41 H 1.09000 * 117.52397 * 107.48399 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6846 -1.1855 5 6 2.2178 0.0666 -2.2849 6 8 1.9977 1.2607 -2.2541 7 6 2.7155 -0.5611 -3.5267 8 6 2.9758 -1.9360 -3.5609 9 6 3.4367 -2.5313 -4.7213 10 6 3.6559 -1.7768 -5.8528 11 6 3.4049 -0.3919 -5.8361 12 6 3.6285 0.3852 -6.9965 13 1 4.3396 0.0546 -7.7391 14 6 2.9283 1.5824 -7.1825 15 7 1.8452 1.8214 -6.4885 16 14 3.5399 2.8395 -8.4215 17 1 3.5695 2.2273 -9.7741 18 1 2.6287 4.0120 -8.4280 19 1 4.9081 3.2786 -8.0469 20 6 2.9316 0.2146 -4.6603 21 6 2.0323 -0.7104 1.2305 22 7 2.5545 -0.1522 2.2960 23 6 2.8520 -1.1668 3.1272 24 6 3.4741 -1.0465 4.4946 25 6 3.9186 -2.3376 5.1846 26 6 2.6792 -1.5917 5.6827 27 7 2.5091 -2.2702 2.5328 28 8 2.0360 -2.0300 1.4420 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 2.8115 -2.5359 -2.6782 33 1 3.6303 -3.5936 -4.7389 34 1 4.0201 -2.2482 -6.7536 35 1 1.3600 2.6514 -6.6171 36 1 2.7361 1.2765 -4.6375 37 1 4.0773 -0.1538 4.6598 38 1 3.7616 -3.2741 4.6494 39 1 4.8147 -2.2946 5.8038 40 1 2.7597 -1.0579 6.6297 41 1 1.7061 -2.0371 5.4755 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919311606.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:45 Heat of formation + Delta-G solvation = 28.107950 kcal Electronic energy + Delta-G solvation = -26507.994499 eV Core-core repulsion = 22550.119964 eV Total energy + Delta-G solvation = -3957.874535 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.76986 -40.16134 -38.01868 -37.59772 -36.35132 -35.52661 -33.84441 -33.25321 -30.91668 -30.16265 -29.56846 -25.65125 -25.55114 -25.17828 -23.67501 -22.81250 -22.63934 -21.08490 -20.50363 -19.82051 -18.31380 -18.01987 -17.90556 -16.63748 -16.43915 -15.93298 -15.70479 -15.41804 -14.93932 -14.79333 -14.43493 -13.78379 -13.34557 -13.26619 -13.01806 -12.90076 -12.61596 -12.60363 -12.36219 -12.23129 -11.96379 -11.79690 -11.56175 -11.27435 -11.25931 -11.17249 -11.07742 -10.95586 -10.82874 -10.66316 -10.57535 -10.33992 -9.93926 -9.80112 -9.62381 -9.29188 -7.83228 -7.62199 -6.88387 -4.49685 0.86784 1.82065 1.87536 2.48179 2.73072 2.73951 3.03464 3.04789 3.10167 3.36655 3.40830 3.46285 3.86190 3.92277 4.34387 4.41120 4.50770 4.52936 4.66573 4.87448 4.98246 5.19285 5.19585 5.30128 5.46859 5.47482 5.55336 5.59185 5.64587 5.68848 5.77269 5.94472 6.06716 6.33647 6.48227 6.72791 6.86107 6.89072 7.10640 7.23187 7.59775 7.67126 7.83749 7.96351 8.02966 8.31902 8.37738 8.70153 8.72512 10.07139 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.022825 B = 0.002450 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.407806 B =11428.152759 C =11923.217081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.180 3.820 3 H 0.131 0.869 4 O -0.345 6.345 5 C 0.518 3.482 6 O -0.509 6.509 7 C -0.115 4.115 8 C -0.193 4.193 9 C -0.103 4.103 10 C -0.199 4.199 11 C 0.095 3.905 12 C -0.459 4.459 13 H 0.083 0.917 14 C 0.073 3.927 15 N -0.787 5.787 16 Si 0.912 3.088 17 H -0.264 1.264 18 H -0.277 1.277 19 H -0.262 1.262 20 C -0.086 4.086 21 C 0.196 3.804 22 N -0.468 5.468 23 C 0.199 3.801 24 C -0.079 4.079 25 C -0.158 4.158 26 C -0.156 4.156 27 N -0.381 5.381 28 O 0.097 5.903 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.286 0.714 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.914 -3.612 16.974 17.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.122 3.878 3 H 0.148 0.852 4 O -0.263 6.263 5 C 0.365 3.635 6 O -0.397 6.397 7 C -0.116 4.116 8 C -0.213 4.213 9 C -0.121 4.121 10 C -0.219 4.219 11 C 0.093 3.907 12 C -0.488 4.488 13 H 0.101 0.899 14 C -0.146 4.146 15 N -0.412 5.412 16 Si 0.736 3.264 17 H -0.189 1.189 18 H -0.202 1.202 19 H -0.187 1.187 20 C -0.106 4.106 21 C -0.025 4.025 22 N -0.202 5.202 23 C -0.073 4.073 24 C -0.099 4.099 25 C -0.196 4.196 26 C -0.195 4.195 27 N -0.087 5.087 28 O 0.038 5.962 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.154 0.846 37 H 0.155 0.845 38 H 0.123 0.877 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.941 -3.521 17.622 17.995 hybrid contribution 0.064 0.743 -0.665 0.999 sum -0.877 -2.778 16.958 17.206 Atomic orbital electron populations 1.22241 0.91045 1.04468 1.04707 1.20698 0.95321 0.95307 0.76471 0.85197 1.86735 1.78025 1.42014 1.19478 1.21993 0.73539 0.84994 0.82960 1.90783 1.49172 1.16046 1.83714 1.18755 1.08320 0.94701 0.89854 1.20586 1.09151 0.93212 0.98343 1.20522 1.00306 0.97880 0.93390 1.21210 1.09387 0.93848 0.97418 1.17536 0.89893 0.91012 0.92276 1.19542 1.20906 1.03798 1.04566 0.89918 1.25965 0.93357 0.98636 0.96612 1.69758 1.11525 1.24514 1.35362 0.86297 0.79922 0.79448 0.80733 1.18902 1.20197 1.18691 1.21657 0.99162 1.00167 0.89596 1.28336 0.95669 0.81387 0.97119 1.71815 1.15965 1.30619 1.01821 1.24782 1.00384 0.83600 0.98524 1.20068 1.04227 1.00971 0.84594 1.23092 0.99023 0.95134 1.02332 1.23083 0.96762 1.02902 0.96735 1.74580 1.15717 1.23766 0.94646 1.85361 1.57613 1.26569 1.26699 0.90478 0.90098 0.89224 0.87749 0.88418 0.88247 0.90302 0.84589 0.84531 0.87715 0.87334 0.87293 0.88394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 9.53 37.15 0.35 -1.61 16 2 C 0.18 2.62 3.12 -27.88 -0.09 2.54 16 3 H 0.13 1.94 7.16 -51.93 -0.37 1.56 16 4 O -0.35 -6.14 9.10 -41.41 -0.38 -6.51 16 5 C 0.52 10.89 7.87 34.63 0.27 11.17 16 6 O -0.51 -11.42 15.59 -19.24 -0.30 -11.72 16 7 C -0.11 -2.65 5.87 -105.05 -0.62 -3.27 16 8 C -0.19 -4.12 9.62 -38.90 -0.37 -4.50 16 9 C -0.10 -2.16 10.01 -39.73 -0.40 -2.55 16 10 C -0.20 -4.56 9.78 -38.81 -0.38 -4.94 16 11 C 0.10 2.43 5.57 -106.87 -0.59 1.83 16 12 C -0.46 -11.60 9.05 -37.73 -0.34 -11.94 16 13 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16 14 C 0.07 1.78 5.14 -17.34 -0.09 1.69 16 15 N -0.79 -19.95 10.97 55.55 0.61 -19.34 16 16 Si 0.91 18.14 29.59 -169.99 -5.03 13.11 16 17 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 18 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 19 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 20 C -0.09 -2.20 8.23 -38.43 -0.32 -2.52 16 21 C 0.20 2.86 7.41 -13.06 -0.10 2.76 16 22 N -0.47 -6.85 11.55 -9.87 -0.11 -6.97 16 23 C 0.20 2.68 7.74 -156.38 -1.21 1.47 16 24 C -0.08 -0.77 6.33 -91.78 -0.58 -1.35 16 25 C -0.16 -1.23 10.14 -26.74 -0.27 -1.50 16 26 C -0.16 -1.16 10.23 -26.74 -0.27 -1.44 16 27 N -0.38 -5.51 11.77 30.90 0.36 -5.15 16 28 O 0.10 1.46 11.31 18.09 0.20 1.66 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.10 2.01 7.59 -52.49 -0.40 1.61 16 33 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 35 H 0.29 6.66 8.30 -40.82 -0.34 6.32 16 36 H 0.14 3.69 5.77 -52.49 -0.30 3.39 16 37 H 0.14 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.10 0.94 7.91 -51.93 -0.41 0.53 16 39 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.11 0.57 8.14 -51.92 -0.42 0.15 16 41 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 364.59 15.07 5.49 5.49 Total: -1.00 -28.28 364.59 -8.99 -37.27 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -4.84 Total: 6.32 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -5.00 Total: -14.16 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: 0.86 Total: -31.45 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.47 Total: -16.57 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.28 -8.99 -37.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919311606.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.374 kcal (2) G-P(sol) polarization free energy of solvation -28.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds