Wall clock time and date at job start Tue Mar 31 2020 16:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47117 * 2 1 4 4 O 1.45201 * 109.47241 * 239.99566 * 2 1 3 5 5 C 1.34702 * 116.99506 * 89.99957 * 4 2 1 6 6 O 1.21463 * 120.00627 * 0.02562 * 5 4 2 7 7 C 1.47777 * 119.99826 * 179.72658 * 5 4 2 8 8 C 1.39970 * 120.02456 * 359.97438 * 7 5 4 9 9 C 1.38319 * 120.34511 * 179.74145 * 8 7 5 10 10 C 1.37754 * 120.42146 * 0.56083 * 9 8 7 11 11 C 1.40753 * 120.05058 * 359.69597 * 10 9 8 12 12 C 1.41440 * 120.17540 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00205 * 334.91920 * 12 11 10 14 14 C 1.39939 * 119.99812 * 154.91931 * 12 11 10 15 15 N 1.30832 * 120.00081 * 342.60141 * 14 12 11 16 16 Si 1.86804 * 119.99873 * 162.60185 * 14 12 11 17 17 H 1.48495 * 109.46963 * 60.00157 * 16 14 12 18 18 H 1.48500 * 109.46836 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47190 * 299.99768 * 16 14 12 20 20 C 1.39048 * 120.03081 * 180.27683 * 7 5 4 21 21 C 1.50705 * 109.47140 * 119.99954 * 2 1 3 22 22 N 1.31129 * 126.54971 * 254.71153 * 21 2 1 23 23 C 1.34496 * 105.61451 * 179.91654 * 22 21 2 24 24 C 1.50704 * 126.28724 * 180.12614 * 23 22 21 25 25 C 1.52991 * 117.49867 * 188.90793 * 24 23 22 26 26 C 1.52991 * 60.00197 * 252.51452 * 25 24 23 27 27 N 1.29939 * 107.42403 * 0.35145 * 23 22 21 28 28 O 1.21297 * 110.25455 * 359.77511 * 27 23 22 29 29 H 1.09004 * 109.47310 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47091 * 300.00030 * 1 2 3 31 31 H 1.08992 * 109.47327 * 60.00323 * 1 2 3 32 32 H 1.07990 * 119.83028 * 0.02796 * 8 7 5 33 33 H 1.08001 * 119.78796 * 180.28222 * 9 8 7 34 34 H 1.07996 * 119.97778 * 179.71964 * 10 9 8 35 35 H 0.96998 * 120.00135 * 179.97438 * 15 14 12 36 36 H 1.07996 * 120.20752 * 359.95145 * 20 7 5 37 37 H 1.08998 * 115.55162 * 334.62122 * 24 23 22 38 38 H 1.09004 * 117.50176 * 0.02562 * 25 24 23 39 39 H 1.09005 * 117.49831 * 145.01939 * 25 24 23 40 40 H 1.09007 * 117.50046 * 252.51315 * 26 25 24 41 41 H 1.09000 * 117.52397 * 107.48399 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6846 -1.1855 5 6 2.2178 0.0666 -2.2849 6 8 1.9977 1.2607 -2.2541 7 6 2.7155 -0.5611 -3.5267 8 6 2.9758 -1.9360 -3.5609 9 6 3.4367 -2.5313 -4.7213 10 6 3.6559 -1.7768 -5.8528 11 6 3.4049 -0.3919 -5.8361 12 6 3.6285 0.3852 -6.9965 13 1 4.3396 0.0546 -7.7391 14 6 2.9283 1.5824 -7.1825 15 7 1.8452 1.8214 -6.4885 16 14 3.5399 2.8395 -8.4215 17 1 3.5695 2.2273 -9.7741 18 1 2.6287 4.0120 -8.4280 19 1 4.9081 3.2786 -8.0469 20 6 2.9316 0.2146 -4.6603 21 6 2.0323 -0.7104 1.2305 22 7 2.5545 -0.1522 2.2960 23 6 2.8520 -1.1668 3.1272 24 6 3.4741 -1.0465 4.4946 25 6 3.9186 -2.3376 5.1846 26 6 2.6792 -1.5917 5.6827 27 7 2.5091 -2.2702 2.5328 28 8 2.0360 -2.0300 1.4420 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 2.8115 -2.5359 -2.6782 33 1 3.6303 -3.5936 -4.7389 34 1 4.0201 -2.2482 -6.7536 35 1 1.3600 2.6514 -6.6171 36 1 2.7361 1.2765 -4.6375 37 1 4.0773 -0.1538 4.6598 38 1 3.7616 -3.2741 4.6494 39 1 4.8147 -2.2946 5.8038 40 1 2.7597 -1.0579 6.6297 41 1 1.7061 -2.0371 5.4755 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919311606.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:43 Heat of formation + Delta-G solvation = 13.891303 kcal Electronic energy + Delta-G solvation = -26508.610979 eV Core-core repulsion = 22550.119964 eV Total energy + Delta-G solvation = -3958.491015 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = -0.74 seconds Orbital eigenvalues (eV) -46.86716 -41.74147 -39.32497 -38.75710 -37.90951 -36.62378 -35.62988 -34.45147 -32.33654 -31.63810 -31.34336 -27.34284 -26.59559 -26.40993 -25.12904 -23.82374 -23.38541 -22.87075 -21.85760 -21.16045 -19.74700 -19.42766 -19.01961 -18.18051 -17.89288 -17.22406 -16.98863 -16.74783 -16.54152 -16.11176 -15.50129 -15.34516 -14.95111 -14.70823 -14.44896 -14.27005 -13.97423 -13.54818 -13.51798 -13.40619 -13.21459 -12.98878 -12.82680 -12.74224 -12.56693 -12.53670 -12.35394 -12.28332 -12.21837 -12.09241 -11.84008 -11.57835 -11.56191 -11.37390 -11.07964 -10.85972 -9.63717 -9.44973 -8.68227 -6.39420 -0.27737 0.07222 0.79600 0.96625 1.23981 1.39320 1.46690 1.49885 1.52165 1.74735 2.20052 2.36875 2.66134 2.71758 2.95141 3.41784 3.54119 3.62256 3.69110 3.72270 3.88321 3.91919 4.08237 4.38342 4.41544 4.50840 4.55990 4.61606 4.63928 4.66388 4.82113 4.86796 4.97225 4.99304 5.04236 5.08902 5.11406 5.12274 5.27835 5.43179 5.78969 5.88164 6.00455 6.22122 6.52057 6.65976 6.85915 6.86482 6.87673 8.29303 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.022825 B = 0.002450 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.407806 B =11428.152759 C =11923.217081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.178 3.822 3 H 0.126 0.874 4 O -0.341 6.341 5 C 0.525 3.475 6 O -0.529 6.529 7 C -0.126 4.126 8 C -0.182 4.182 9 C -0.099 4.099 10 C -0.202 4.202 11 C 0.066 3.934 12 C -0.493 4.493 13 H 0.087 0.913 14 C 0.032 3.968 15 N -0.824 5.824 16 Si 0.982 3.018 17 H -0.254 1.254 18 H -0.272 1.272 19 H -0.261 1.261 20 C -0.118 4.118 21 C 0.195 3.805 22 N -0.480 5.480 23 C 0.201 3.799 24 C -0.105 4.105 25 C -0.150 4.150 26 C -0.140 4.140 27 N -0.394 5.394 28 O 0.085 5.915 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.130 0.870 33 H 0.139 0.861 34 H 0.115 0.885 35 H 0.289 0.711 36 H 0.110 0.890 37 H 0.150 0.850 38 H 0.090 0.910 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.512 -4.620 18.545 19.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.121 3.879 3 H 0.143 0.857 4 O -0.258 6.258 5 C 0.373 3.627 6 O -0.420 6.420 7 C -0.128 4.128 8 C -0.202 4.202 9 C -0.117 4.117 10 C -0.221 4.221 11 C 0.063 3.937 12 C -0.522 4.522 13 H 0.105 0.895 14 C -0.184 4.184 15 N -0.449 5.449 16 Si 0.803 3.197 17 H -0.178 1.178 18 H -0.196 1.196 19 H -0.186 1.186 20 C -0.138 4.138 21 C -0.026 4.026 22 N -0.215 5.215 23 C -0.071 4.071 24 C -0.125 4.125 25 C -0.188 4.188 26 C -0.179 4.179 27 N -0.102 5.102 28 O 0.029 5.971 29 H 0.106 0.894 30 H 0.124 0.876 31 H 0.099 0.901 32 H 0.148 0.852 33 H 0.157 0.843 34 H 0.133 0.867 35 H 0.100 0.900 36 H 0.128 0.872 37 H 0.167 0.833 38 H 0.108 0.892 39 H 0.152 0.848 40 H 0.155 0.845 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.549 -4.565 19.193 19.736 hybrid contribution -0.058 0.907 -0.952 1.316 sum -0.607 -3.658 18.241 18.614 Atomic orbital electron populations 1.22260 0.88679 1.05460 1.05501 1.20961 0.97101 0.94719 0.75118 0.85655 1.86661 1.77789 1.41707 1.19643 1.21632 0.73130 0.84604 0.83364 1.90767 1.49989 1.16950 1.84254 1.18985 1.08009 0.95601 0.90172 1.20955 1.07247 0.92509 0.99447 1.20951 0.98715 0.99779 0.92267 1.21506 1.08657 0.93109 0.98876 1.17898 0.90749 0.92480 0.92522 1.19826 1.21969 1.05271 1.05143 0.89499 1.26820 0.93025 1.00127 0.98388 1.69842 1.12744 1.25182 1.37153 0.85242 0.79142 0.76856 0.78497 1.17778 1.19622 1.18559 1.21473 1.01994 0.99334 0.91015 1.28244 0.95784 0.81485 0.97075 1.71840 1.16217 1.31243 1.02191 1.25487 0.99250 0.82852 0.99494 1.20397 1.05894 1.02679 0.83487 1.23184 1.00371 0.93445 1.01752 1.23199 0.96114 1.01965 0.96587 1.74578 1.16691 1.24252 0.94703 1.85341 1.58088 1.26543 1.27153 0.89396 0.87593 0.90067 0.85181 0.84319 0.86698 0.90032 0.87250 0.83255 0.89187 0.84757 0.84507 0.89293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 9.53 71.98 0.69 -2.94 16 2 C 0.18 5.12 3.12 29.85 0.09 5.21 16 3 H 0.13 3.76 7.16 -2.39 -0.02 3.74 16 4 O -0.34 -12.00 9.10 -55.26 -0.50 -12.51 16 5 C 0.53 22.42 7.87 70.35 0.55 22.97 16 6 O -0.53 -24.55 15.59 19.95 0.31 -24.24 16 7 C -0.13 -5.90 5.87 -20.14 -0.12 -6.02 16 8 C -0.18 -7.50 9.62 22.71 0.22 -7.28 16 9 C -0.10 -3.95 10.01 22.17 0.22 -3.73 16 10 C -0.20 -9.14 9.78 22.77 0.22 -8.92 16 11 C 0.07 3.44 5.57 -21.32 -0.12 3.32 16 12 C -0.49 -25.66 9.05 23.47 0.21 -25.45 16 13 H 0.09 4.25 7.90 -2.91 -0.02 4.23 16 14 C 0.03 1.59 5.14 85.25 0.44 2.02 16 15 N -0.82 -43.55 10.97 21.83 0.24 -43.31 16 16 Si 0.98 37.86 29.59 68.60 2.03 39.89 16 17 H -0.25 -9.26 7.11 99.48 0.71 -8.56 16 18 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 19 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 20 C -0.12 -6.28 8.23 23.02 0.19 -6.09 16 21 C 0.20 5.56 7.41 88.38 0.65 6.21 16 22 N -0.48 -13.69 11.55 -303.21 -3.50 -17.19 16 23 C 0.20 5.20 7.74 138.47 1.07 6.27 16 24 C -0.10 -1.84 6.33 -11.54 -0.07 -1.91 16 25 C -0.15 -1.98 10.14 30.59 0.31 -1.67 16 26 C -0.14 -1.72 10.23 30.59 0.31 -1.41 16 27 N -0.39 -11.08 11.77 -60.34 -0.71 -11.79 16 28 O 0.09 2.50 11.31 74.83 0.85 3.34 16 29 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.13 4.66 7.59 -2.92 -0.02 4.64 16 33 H 0.14 4.38 8.06 -2.91 -0.02 4.35 16 34 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 35 H 0.29 14.04 8.30 -92.71 -0.77 13.27 16 36 H 0.11 6.32 5.77 -2.91 -0.02 6.30 16 37 H 0.15 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.09 1.49 7.91 -2.38 -0.02 1.47 16 39 H 0.13 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.14 0.92 8.14 -2.38 -0.02 0.91 16 41 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -63.36 364.59 4.66 -58.70 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 1.07 Total: 26.53 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: 4.88 Total: -19.42 kcal Atomic # 7 Polarization: -68.33 SS G_CDS: -3.97 Total: -72.30 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: 0.65 Total: -33.40 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 2.03 Total: 39.89 kcal Total: -63.36 4.66 -58.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919311606.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.590 kcal (2) G-P(sol) polarization free energy of solvation -63.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.74 seconds