Wall clock time and date at job start Tue Mar 31 2020 16:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.46615 * 2 1 4 4 O 1.45196 * 109.47230 * 119.99997 * 2 1 3 5 5 C 1.34701 * 117.00173 * 270.00489 * 4 2 1 6 6 O 1.21471 * 120.00052 * 359.97438 * 5 4 2 7 7 C 1.47770 * 120.00294 * 180.02562 * 5 4 2 8 8 C 1.39967 * 120.02716 * 359.71981 * 7 5 4 9 9 C 1.38317 * 120.35317 * 179.76662 * 8 7 5 10 10 C 1.37757 * 120.41768 * 0.51242 * 9 8 7 11 11 C 1.40759 * 120.04885 * 359.74541 * 10 9 8 12 12 C 1.41439 * 120.17343 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99995 * 150.17445 * 12 11 10 14 14 C 1.39933 * 120.00220 * 330.17776 * 12 11 10 15 15 N 1.30825 * 120.00236 * 161.72822 * 14 12 11 16 16 Si 1.86798 * 120.00145 * 341.72862 * 14 12 11 17 17 H 1.48498 * 109.47090 * 95.41151 * 16 14 12 18 18 H 1.48500 * 109.47516 * 215.41073 * 16 14 12 19 19 H 1.48506 * 109.47101 * 335.41400 * 16 14 12 20 20 C 1.39043 * 120.03397 * 179.97438 * 7 5 4 21 21 C 1.50701 * 109.47245 * 240.00385 * 2 1 3 22 22 N 1.31130 * 126.55061 * 104.99410 * 21 2 1 23 23 C 1.34495 * 105.61596 * 180.02562 * 22 21 2 24 24 C 1.50700 * 126.28831 * 179.97438 * 23 22 21 25 25 C 1.52996 * 117.49884 * 188.62400 * 24 23 22 26 26 C 1.52996 * 117.49679 * 120.00160 * 24 23 22 27 27 N 1.29945 * 107.42074 * 0.02562 * 23 22 21 28 28 O 1.21294 * 110.25578 * 359.70244 * 27 23 22 29 29 H 1.08993 * 109.47090 * 299.99051 * 1 2 3 30 30 H 1.08996 * 109.47203 * 60.00146 * 1 2 3 31 31 H 1.09011 * 109.46521 * 179.97438 * 1 2 3 32 32 H 1.08000 * 119.82744 * 0.02562 * 8 7 5 33 33 H 1.08002 * 119.79291 * 180.25840 * 9 8 7 34 34 H 1.07997 * 119.97548 * 179.76306 * 10 9 8 35 35 H 0.96997 * 120.00700 * 179.97438 * 15 14 12 36 36 H 1.07999 * 120.20816 * 359.95757 * 20 7 5 37 37 H 1.09001 * 115.54841 * 334.32955 * 24 23 22 38 38 H 1.09004 * 117.49930 * 359.97438 * 25 24 23 39 39 H 1.09003 * 117.50074 * 145.01911 * 25 24 23 40 40 H 1.09002 * 117.49568 * 214.97756 * 26 24 23 41 41 H 1.09000 * 117.50301 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0141 -0.6845 1.1855 5 6 2.2178 0.0666 2.2850 6 8 1.9977 1.2608 2.2541 7 6 2.7103 -0.5619 3.5284 8 6 2.9596 -1.9387 3.5660 9 6 3.4252 -2.5332 4.7249 10 6 3.6390 -1.7797 5.8581 11 6 3.3888 -0.3946 5.8411 12 6 3.6079 0.3817 7.0029 13 1 3.8901 1.4203 6.9131 14 6 3.4589 -0.1959 8.2687 15 7 3.9906 0.3790 9.3168 16 14 2.5011 -1.7879 8.4621 17 1 3.4422 -2.9365 8.4487 18 1 1.7627 -1.7680 9.7504 19 1 1.5369 -1.9248 7.3410 20 6 2.9214 0.2128 4.6635 21 6 2.0324 -0.7103 -1.2305 22 7 2.5497 -0.1517 -2.2982 23 6 2.8507 -1.1665 -3.1279 24 6 3.4714 -1.0460 -4.4959 25 6 3.5437 -2.3114 -5.3528 26 6 4.8161 -1.7389 -4.7250 27 7 2.5070 -2.2699 -2.5338 28 8 2.0399 -2.0302 -1.4403 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 2.7915 -2.5394 2.6844 33 1 3.6186 -3.5956 4.7426 34 1 3.9990 -2.2519 6.7601 35 1 3.8871 -0.0211 10.1943 36 1 2.7271 1.2750 4.6403 37 1 3.2989 -0.0998 -5.0087 38 1 3.1428 -3.2313 -4.9269 39 1 3.4187 -2.1979 -6.4296 40 1 5.5281 -1.2486 -5.3889 41 1 5.2521 -2.2815 -3.8862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919311607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:50 Heat of formation + Delta-G solvation = 30.069097 kcal Electronic energy + Delta-G solvation = -26391.209906 eV Core-core repulsion = 22433.420413 eV Total energy + Delta-G solvation = -3957.789494 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.85424 -40.38758 -38.06901 -37.88665 -36.58278 -35.62652 -33.82711 -33.36783 -31.11492 -30.57983 -30.13903 -25.75450 -25.61818 -25.17190 -23.90810 -22.89762 -22.79185 -21.00709 -20.71236 -20.13544 -18.32325 -18.21442 -18.08506 -16.85589 -16.50119 -16.04682 -15.92377 -15.81041 -15.03322 -14.76013 -14.65333 -13.98035 -13.63402 -13.45841 -13.09155 -12.93274 -12.82364 -12.64237 -12.46059 -12.38875 -12.15001 -11.99906 -11.72518 -11.71918 -11.34223 -11.20839 -11.16762 -10.99526 -10.90313 -10.81572 -10.68125 -10.24994 -10.01886 -9.95942 -9.76437 -9.31971 -8.06175 -7.87479 -7.07434 -4.63468 0.77978 1.53258 1.78654 2.35059 2.42809 2.60092 2.99845 3.11044 3.14191 3.25363 3.29293 3.37047 3.82607 3.86577 4.27708 4.34770 4.36512 4.48323 4.53288 4.74823 4.90039 5.01310 5.17740 5.20150 5.23982 5.39051 5.44223 5.45945 5.58323 5.64730 5.68112 5.81012 5.83521 6.06639 6.20361 6.44381 6.53988 6.54877 6.85510 7.08482 7.29211 7.39632 7.63604 7.78913 7.88291 8.05714 8.19280 8.41258 8.62200 9.94478 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.024608 B = 0.002387 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.574500 B =11725.215486 C =12053.806593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.181 3.819 3 H 0.132 0.868 4 O -0.343 6.343 5 C 0.519 3.481 6 O -0.510 6.510 7 C -0.096 4.096 8 C -0.192 4.192 9 C -0.088 4.088 10 C -0.210 4.210 11 C 0.078 3.922 12 C -0.442 4.442 13 H 0.095 0.905 14 C 0.083 3.917 15 N -0.801 5.801 16 Si 0.909 3.091 17 H -0.268 1.268 18 H -0.288 1.288 19 H -0.243 1.243 20 C -0.131 4.131 21 C 0.193 3.807 22 N -0.466 5.466 23 C 0.200 3.800 24 C -0.080 4.080 25 C -0.158 4.158 26 C -0.156 4.156 27 N -0.380 5.380 28 O 0.098 5.902 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.287 0.713 36 H 0.119 0.881 37 H 0.137 0.863 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.815 -4.648 -20.990 21.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.123 3.877 3 H 0.149 0.851 4 O -0.260 6.260 5 C 0.366 3.634 6 O -0.398 6.398 7 C -0.098 4.098 8 C -0.211 4.211 9 C -0.106 4.106 10 C -0.230 4.230 11 C 0.075 3.925 12 C -0.470 4.470 13 H 0.113 0.887 14 C -0.137 4.137 15 N -0.424 5.424 16 Si 0.735 3.265 17 H -0.194 1.194 18 H -0.215 1.215 19 H -0.166 1.166 20 C -0.151 4.151 21 C -0.028 4.028 22 N -0.201 5.201 23 C -0.072 4.072 24 C -0.100 4.100 25 C -0.196 4.196 26 C -0.194 4.194 27 N -0.086 5.086 28 O 0.038 5.962 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.129 0.871 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.098 0.902 36 H 0.137 0.863 37 H 0.155 0.845 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.585 -4.660 -21.335 22.131 hybrid contribution -0.372 -0.474 0.414 0.731 sum -3.957 -5.134 -20.921 21.902 Atomic orbital electron populations 1.22251 0.90921 1.04564 1.04763 1.20723 0.95368 0.95315 0.76283 0.85086 1.86722 1.77852 1.41913 1.19533 1.21912 0.73410 0.84956 0.83138 1.90788 1.49109 1.16014 1.83928 1.18679 1.06943 0.94673 0.89461 1.20630 1.09016 0.92967 0.98495 1.20595 0.98689 0.98221 0.93124 1.21290 1.08524 0.95196 0.97946 1.17642 0.90138 0.91695 0.93023 1.19489 1.39243 0.99661 0.88566 0.88723 1.26168 0.93426 0.98680 0.95399 1.69679 1.32747 1.39124 1.00847 0.86338 0.81065 0.80725 0.78401 1.19431 1.21491 1.16581 1.21278 1.02662 0.99230 0.91890 1.28290 0.95932 0.81444 0.97139 1.71813 1.15843 1.30642 1.01770 1.24796 1.00291 0.83552 0.98551 1.20076 1.01575 0.99836 0.88481 1.23092 1.01057 0.96245 0.99196 1.23103 0.90274 1.02516 1.03546 1.74589 1.15668 1.23795 0.94538 1.85362 1.57844 1.26497 1.26515 0.89274 0.89942 0.90399 0.87138 0.87828 0.87599 0.90196 0.86322 0.84522 0.87753 0.87344 0.87209 0.88265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 9.53 37.16 0.35 -1.35 16 2 C 0.18 2.35 3.12 -27.88 -0.09 2.26 16 3 H 0.13 1.73 7.16 -51.93 -0.37 1.36 16 4 O -0.34 -5.45 9.10 -41.44 -0.38 -5.82 16 5 C 0.52 9.65 7.87 34.63 0.27 9.93 16 6 O -0.51 -10.06 15.59 -19.24 -0.30 -10.36 16 7 C -0.10 -1.99 5.87 -105.05 -0.62 -2.61 16 8 C -0.19 -3.74 9.62 -38.91 -0.37 -4.12 16 9 C -0.09 -1.76 10.01 -39.73 -0.40 -2.16 16 10 C -0.21 -4.73 7.17 -38.81 -0.28 -5.01 16 11 C 0.08 1.88 5.10 -106.87 -0.55 1.34 16 12 C -0.44 -11.40 9.57 -37.73 -0.36 -11.76 16 13 H 0.09 2.56 8.06 -52.48 -0.42 2.14 16 14 C 0.08 2.08 5.40 -17.35 -0.09 1.99 16 15 N -0.80 -20.46 13.93 55.55 0.77 -19.69 16 16 Si 0.91 19.60 24.52 -169.99 -4.17 15.44 16 17 H -0.27 -5.57 6.71 56.52 0.38 -5.19 16 18 H -0.29 -6.02 7.11 56.52 0.40 -5.61 16 19 H -0.24 -5.33 6.87 56.52 0.39 -4.95 16 20 C -0.13 -2.98 9.34 -38.43 -0.36 -3.34 16 21 C 0.19 2.58 7.41 -13.06 -0.10 2.49 16 22 N -0.47 -6.37 11.55 -9.87 -0.11 -6.48 16 23 C 0.20 2.53 7.74 -156.37 -1.21 1.32 16 24 C -0.08 -0.72 6.33 -91.78 -0.58 -1.31 16 25 C -0.16 -1.13 10.14 -26.73 -0.27 -1.40 16 26 C -0.16 -1.17 10.23 -26.73 -0.27 -1.44 16 27 N -0.38 -5.18 11.77 30.90 0.36 -4.82 16 28 O 0.10 1.36 11.31 18.09 0.20 1.57 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 32 H 0.11 1.92 7.59 -52.49 -0.40 1.52 16 33 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.11 2.35 4.72 -52.49 -0.25 2.11 16 35 H 0.29 6.63 8.30 -40.82 -0.34 6.29 16 36 H 0.12 2.67 7.64 -52.49 -0.40 2.27 16 37 H 0.14 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.10 0.86 7.91 -51.93 -0.41 0.45 16 39 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 359.32 15.07 5.41 5.41 Total: -1.00 -27.87 359.32 -7.93 -35.79 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -4.81 Total: 4.13 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -4.92 Total: -15.17 kcal Atomic # 7 Polarization: -32.01 SS G_CDS: 1.02 Total: -30.99 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.47 Total: -14.62 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.17 Total: 15.44 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.87 -7.93 -35.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919311607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.864 kcal (2) G-P(sol) polarization free energy of solvation -27.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds