Wall clock time and date at job start Tue Mar 31 2020 16:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.46615 * 2 1 4 4 O 1.45196 * 109.47230 * 119.99997 * 2 1 3 5 5 C 1.34701 * 117.00173 * 270.00489 * 4 2 1 6 6 O 1.21471 * 120.00052 * 359.97438 * 5 4 2 7 7 C 1.47770 * 120.00294 * 180.02562 * 5 4 2 8 8 C 1.39967 * 120.02716 * 359.71981 * 7 5 4 9 9 C 1.38317 * 120.35317 * 179.76662 * 8 7 5 10 10 C 1.37757 * 120.41768 * 0.51242 * 9 8 7 11 11 C 1.40759 * 120.04885 * 359.74541 * 10 9 8 12 12 C 1.41439 * 120.17343 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99995 * 150.17445 * 12 11 10 14 14 C 1.39933 * 120.00220 * 330.17776 * 12 11 10 15 15 N 1.30825 * 120.00236 * 161.72822 * 14 12 11 16 16 Si 1.86798 * 120.00145 * 341.72862 * 14 12 11 17 17 H 1.48498 * 109.47090 * 95.41151 * 16 14 12 18 18 H 1.48500 * 109.47516 * 215.41073 * 16 14 12 19 19 H 1.48506 * 109.47101 * 335.41400 * 16 14 12 20 20 C 1.39043 * 120.03397 * 179.97438 * 7 5 4 21 21 C 1.50701 * 109.47245 * 240.00385 * 2 1 3 22 22 N 1.31130 * 126.55061 * 104.99410 * 21 2 1 23 23 C 1.34495 * 105.61596 * 180.02562 * 22 21 2 24 24 C 1.50700 * 126.28831 * 179.97438 * 23 22 21 25 25 C 1.52996 * 117.49884 * 188.62400 * 24 23 22 26 26 C 1.52996 * 117.49679 * 120.00160 * 24 23 22 27 27 N 1.29945 * 107.42074 * 0.02562 * 23 22 21 28 28 O 1.21294 * 110.25578 * 359.70244 * 27 23 22 29 29 H 1.08993 * 109.47090 * 299.99051 * 1 2 3 30 30 H 1.08996 * 109.47203 * 60.00146 * 1 2 3 31 31 H 1.09011 * 109.46521 * 179.97438 * 1 2 3 32 32 H 1.08000 * 119.82744 * 0.02562 * 8 7 5 33 33 H 1.08002 * 119.79291 * 180.25840 * 9 8 7 34 34 H 1.07997 * 119.97548 * 179.76306 * 10 9 8 35 35 H 0.96997 * 120.00700 * 179.97438 * 15 14 12 36 36 H 1.07999 * 120.20816 * 359.95757 * 20 7 5 37 37 H 1.09001 * 115.54841 * 334.32955 * 24 23 22 38 38 H 1.09004 * 117.49930 * 359.97438 * 25 24 23 39 39 H 1.09003 * 117.50074 * 145.01911 * 25 24 23 40 40 H 1.09002 * 117.49568 * 214.97756 * 26 24 23 41 41 H 1.09000 * 117.50301 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0141 -0.6845 1.1855 5 6 2.2178 0.0666 2.2850 6 8 1.9977 1.2608 2.2541 7 6 2.7103 -0.5619 3.5284 8 6 2.9596 -1.9387 3.5660 9 6 3.4252 -2.5332 4.7249 10 6 3.6390 -1.7797 5.8581 11 6 3.3888 -0.3946 5.8411 12 6 3.6079 0.3817 7.0029 13 1 3.8901 1.4203 6.9131 14 6 3.4589 -0.1959 8.2687 15 7 3.9906 0.3790 9.3168 16 14 2.5011 -1.7879 8.4621 17 1 3.4422 -2.9365 8.4487 18 1 1.7627 -1.7680 9.7504 19 1 1.5369 -1.9248 7.3410 20 6 2.9214 0.2128 4.6635 21 6 2.0324 -0.7103 -1.2305 22 7 2.5497 -0.1517 -2.2982 23 6 2.8507 -1.1665 -3.1279 24 6 3.4714 -1.0460 -4.4959 25 6 3.5437 -2.3114 -5.3528 26 6 4.8161 -1.7389 -4.7250 27 7 2.5070 -2.2699 -2.5338 28 8 2.0399 -2.0302 -1.4403 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 2.7915 -2.5394 2.6844 33 1 3.6186 -3.5956 4.7426 34 1 3.9990 -2.2519 6.7601 35 1 3.8871 -0.0211 10.1943 36 1 2.7271 1.2750 4.6403 37 1 3.2989 -0.0998 -5.0087 38 1 3.1428 -3.2313 -4.9269 39 1 3.4187 -2.1979 -6.4296 40 1 5.5281 -1.2486 -5.3889 41 1 5.2521 -2.2815 -3.8862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919311607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:49 Heat of formation + Delta-G solvation = 14.861991 kcal Electronic energy + Delta-G solvation = -26391.869336 eV Core-core repulsion = 22433.420413 eV Total energy + Delta-G solvation = -3958.448923 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -46.86178 -41.80951 -39.55346 -38.75415 -37.98487 -36.62286 -35.61016 -34.46571 -32.65216 -31.99292 -31.60537 -27.31833 -26.58424 -26.40679 -25.30135 -23.90964 -23.38727 -22.60580 -22.21314 -21.22523 -19.85355 -19.34938 -19.11554 -18.34029 -17.90022 -17.44639 -17.18796 -16.75773 -16.50536 -16.21310 -15.64667 -15.50512 -15.00027 -14.70223 -14.59556 -14.38184 -13.96364 -13.88665 -13.54422 -13.41766 -13.31224 -13.25181 -12.89134 -12.79139 -12.66681 -12.54468 -12.37376 -12.34066 -12.25536 -11.86669 -11.84342 -11.68995 -11.58038 -11.51291 -11.07577 -10.84749 -9.75310 -9.65396 -8.91771 -6.56005 -0.26284 -0.10417 0.70564 0.79803 1.20922 1.27420 1.42546 1.45497 1.50335 1.61538 2.11624 2.36329 2.57685 2.68138 2.93416 3.38157 3.42879 3.52415 3.66560 3.72533 3.85822 3.90774 4.08751 4.22454 4.40062 4.41594 4.45110 4.58369 4.59670 4.65262 4.67616 4.82856 4.85362 4.86560 4.97205 4.99301 5.04601 5.11985 5.13220 5.35632 5.59224 5.67599 5.81217 6.05910 6.27365 6.56205 6.60610 6.72931 6.87954 8.16548 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.024608 B = 0.002387 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.574500 B =11725.215486 C =12053.806593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.180 3.820 3 H 0.129 0.871 4 O -0.339 6.339 5 C 0.528 3.472 6 O -0.525 6.525 7 C -0.103 4.103 8 C -0.166 4.166 9 C -0.087 4.087 10 C -0.213 4.213 11 C 0.063 3.937 12 C -0.483 4.483 13 H 0.056 0.944 14 C 0.046 3.954 15 N -0.845 5.845 16 Si 0.962 3.038 17 H -0.248 1.248 18 H -0.278 1.278 19 H -0.248 1.248 20 C -0.152 4.152 21 C 0.193 3.807 22 N -0.479 5.479 23 C 0.200 3.800 24 C -0.102 4.102 25 C -0.145 4.145 26 C -0.150 4.150 27 N -0.394 5.394 28 O 0.087 5.913 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.110 0.890 35 H 0.296 0.704 36 H 0.105 0.895 37 H 0.153 0.847 38 H 0.091 0.909 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.494 -7.297 -23.908 25.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.123 3.877 3 H 0.146 0.854 4 O -0.256 6.256 5 C 0.375 3.625 6 O -0.415 6.415 7 C -0.104 4.104 8 C -0.185 4.185 9 C -0.104 4.104 10 C -0.232 4.232 11 C 0.060 3.940 12 C -0.512 4.512 13 H 0.074 0.926 14 C -0.169 4.169 15 N -0.470 5.470 16 Si 0.784 3.216 17 H -0.173 1.173 18 H -0.204 1.204 19 H -0.172 1.172 20 C -0.171 4.171 21 C -0.028 4.028 22 N -0.214 5.214 23 C -0.072 4.072 24 C -0.121 4.121 25 C -0.182 4.182 26 C -0.189 4.189 27 N -0.102 5.102 28 O 0.030 5.970 29 H 0.104 0.896 30 H 0.122 0.878 31 H 0.106 0.894 32 H 0.161 0.839 33 H 0.164 0.836 34 H 0.128 0.872 35 H 0.106 0.894 36 H 0.123 0.877 37 H 0.171 0.829 38 H 0.109 0.891 39 H 0.155 0.845 40 H 0.153 0.847 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.265 -7.320 -24.258 25.695 hybrid contribution -0.148 0.323 0.995 1.057 sum -4.414 -6.996 -23.263 24.690 Atomic orbital electron populations 1.22280 0.88514 1.05543 1.05666 1.21000 0.97135 0.94730 0.74859 0.85358 1.86648 1.77630 1.41633 1.19648 1.21452 0.73132 0.84578 0.83380 1.90788 1.49626 1.16731 1.84340 1.18865 1.06416 0.95338 0.89766 1.21103 1.05581 0.92423 0.99389 1.21049 0.97281 1.00204 0.91906 1.21483 1.08034 0.94432 0.99269 1.17736 0.90654 0.92800 0.92779 1.19429 1.42812 0.98530 0.90410 0.92570 1.26873 0.93746 1.01645 0.94626 1.69712 1.34659 1.41131 1.01547 0.85538 0.79942 0.77704 0.78405 1.17319 1.20404 1.17172 1.21229 1.04019 0.99069 0.92805 1.28300 0.95851 0.81471 0.97174 1.71837 1.16199 1.31227 1.02187 1.25463 0.99321 0.82906 0.99502 1.20402 1.02839 1.01573 0.87315 1.23179 1.00126 0.94572 1.00355 1.23195 0.90305 1.01974 1.03407 1.74585 1.16600 1.24311 0.94699 1.85339 1.58244 1.26554 1.26858 0.89613 0.87760 0.89390 0.83898 0.83574 0.87246 0.89380 0.87697 0.82930 0.89090 0.84543 0.84697 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.53 71.98 0.69 -2.26 16 2 C 0.18 4.37 3.12 29.85 0.09 4.46 16 3 H 0.13 3.24 7.16 -2.38 -0.02 3.23 16 4 O -0.34 -10.05 9.10 -55.20 -0.50 -10.55 16 5 C 0.53 18.99 7.87 70.34 0.55 19.54 16 6 O -0.52 -20.59 15.59 19.93 0.31 -20.28 16 7 C -0.10 -4.11 5.87 -20.14 -0.12 -4.23 16 8 C -0.17 -5.89 9.62 22.71 0.22 -5.67 16 9 C -0.09 -3.13 10.01 22.17 0.22 -2.91 16 10 C -0.21 -9.25 7.17 22.77 0.16 -9.08 16 11 C 0.06 3.09 5.10 -21.32 -0.11 2.99 16 12 C -0.48 -26.46 9.57 23.47 0.22 -26.24 16 13 H 0.06 3.36 8.06 -2.91 -0.02 3.34 16 14 C 0.05 2.40 5.40 85.25 0.46 2.86 16 15 N -0.84 -45.15 13.93 21.82 0.30 -44.85 16 16 Si 0.96 40.09 24.52 68.60 1.68 41.77 16 17 H -0.25 -9.48 6.71 99.48 0.67 -8.81 16 18 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 19 H -0.25 -10.44 6.87 99.48 0.68 -9.76 16 20 C -0.15 -7.05 9.34 23.02 0.21 -6.83 16 21 C 0.19 4.86 7.41 88.38 0.65 5.52 16 22 N -0.48 -12.42 11.55 -303.20 -3.50 -15.92 16 23 C 0.20 4.75 7.74 138.46 1.07 5.82 16 24 C -0.10 -1.62 6.33 -11.54 -0.07 -1.69 16 25 C -0.14 -1.70 10.14 30.59 0.31 -1.38 16 26 C -0.15 -1.90 10.23 30.59 0.31 -1.58 16 27 N -0.39 -10.20 11.77 -60.33 -0.71 -10.91 16 28 O 0.09 2.29 11.31 74.85 0.85 3.14 16 29 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.09 1.43 8.14 -2.38 -0.02 1.42 16 32 H 0.14 4.22 7.59 -2.91 -0.02 4.20 16 33 H 0.15 4.11 8.06 -2.91 -0.02 4.08 16 34 H 0.11 4.65 4.72 -2.91 -0.01 4.64 16 35 H 0.30 14.10 8.30 -92.71 -0.77 13.33 16 36 H 0.10 5.04 7.64 -2.91 -0.02 5.02 16 37 H 0.15 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.09 1.34 7.91 -2.38 -0.02 1.32 16 39 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -62.85 359.32 4.33 -58.53 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 1.01 Total: 19.76 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: 4.89 Total: -20.69 kcal Atomic # 7 Polarization: -67.77 SS G_CDS: -3.91 Total: -71.68 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: 0.65 Total: -27.69 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 1.68 Total: 41.77 kcal Total: -62.85 4.33 -58.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919311607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.388 kcal (2) G-P(sol) polarization free energy of solvation -62.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds