Wall clock time and date at job start Tue Mar 31 2020 14:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34432 * 126.81045 * 2 1 4 4 N 1.36435 * 109.08089 * 180.23132 * 3 2 1 5 5 H 0.96996 * 124.80668 * 179.72897 * 4 3 2 6 6 C 1.34626 * 110.38046 * 359.74260 * 4 3 2 7 7 C 1.37838 * 108.20913 * 0.02562 * 6 4 3 8 8 C 1.47105 * 127.02812 * 179.97438 * 7 6 4 9 9 O 1.21549 * 120.00333 * 180.02562 * 8 7 6 10 10 O 1.34790 * 119.99859 * 0.02562 * 8 7 6 11 11 C 1.45196 * 117.00235 * 180.02562 * 10 8 7 12 12 C 1.50705 * 109.47185 * 180.02562 * 11 10 8 13 13 O 1.21282 * 119.99932 * 359.72149 * 12 11 10 14 14 N 1.34771 * 119.99722 * 180.02562 * 12 11 10 15 15 C 1.39239 * 119.99792 * 176.70852 * 14 12 11 16 16 C 1.39479 * 119.83686 * 217.39742 * 15 14 12 17 17 C 1.36370 * 120.17023 * 179.75963 * 16 15 14 18 18 C 1.40868 * 119.83051 * 0.51710 * 17 16 15 19 19 C 1.41153 * 120.16370 * 179.71934 * 18 17 16 20 20 H 1.08001 * 119.99519 * 157.97855 * 19 18 17 21 21 C 1.39907 * 120.00247 * 337.97917 * 19 18 17 22 22 N 1.30873 * 119.99916 * 327.62160 * 21 19 18 23 23 Si 1.86801 * 119.99952 * 147.62215 * 21 19 18 24 24 H 1.48503 * 109.46786 * 94.98549 * 23 21 19 25 25 H 1.48496 * 109.46954 * 214.98425 * 23 21 19 26 26 H 1.48497 * 109.47178 * 334.98800 * 23 21 19 27 27 C 1.40868 * 119.67078 * 359.73779 * 18 17 16 28 28 C 1.36377 * 119.82982 * 0.02562 * 27 18 17 29 29 H 1.08995 * 109.47252 * 270.18304 * 1 2 3 30 30 H 1.09002 * 109.46711 * 30.18362 * 1 2 3 31 31 H 1.08999 * 109.46909 * 150.17212 * 1 2 3 32 32 H 1.07998 * 125.46166 * 359.97438 * 3 2 1 33 33 H 1.08002 * 125.89478 * 180.02562 * 6 4 3 34 34 H 1.08998 * 109.47461 * 60.00080 * 11 10 8 35 35 H 1.09001 * 109.47298 * 300.00135 * 11 10 8 36 36 H 0.97001 * 120.00585 * 356.70678 * 14 12 11 37 37 H 1.08002 * 119.91261 * 0.02571 * 16 15 14 38 38 H 1.08006 * 120.08792 * 180.25128 * 17 16 15 39 39 H 0.96995 * 120.00099 * 179.97438 * 22 21 19 40 40 H 1.07993 * 120.08737 * 179.97438 * 27 18 17 41 41 H 1.07996 * 119.91688 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3125 1.0763 0.0000 4 7 3.6121 0.6608 -0.0052 5 1 4.3819 1.2508 -0.0100 6 6 3.6743 -0.6840 -0.0030 7 6 2.3863 -1.1748 0.0033 8 6 1.9767 -2.5877 0.0070 9 8 0.7965 -2.8784 0.0121 10 8 2.9102 -3.5600 0.0049 11 6 2.4336 -4.9315 0.0083 12 6 3.6108 -5.8724 0.0059 13 8 4.7403 -5.4306 -0.0033 14 7 3.4084 -7.2049 0.0079 15 6 4.4938 -8.0740 -0.0636 16 6 4.3917 -9.2525 -0.8026 17 6 5.4522 -10.1063 -0.8812 18 6 6.6494 -9.8007 -0.2046 19 6 7.7495 -10.6823 -0.2764 20 1 8.7471 -10.3178 -0.0804 21 6 7.5475 -12.0280 -0.6013 22 7 6.4445 -12.6307 -0.2369 23 14 8.8523 -12.9645 -1.5552 24 1 9.7323 -13.6926 -0.6060 25 1 8.1969 -13.9360 -2.4672 26 1 9.6650 -12.0095 -2.3505 27 6 6.7432 -8.6112 0.5441 28 6 5.6758 -7.7648 0.6095 29 1 -0.3633 0.0033 1.0276 30 1 -0.3633 0.8884 -0.5167 31 1 -0.3633 -0.8915 -0.5112 32 1 1.9837 2.1050 -0.0004 33 1 4.5776 -1.2761 -0.0057 34 1 1.8258 -5.1072 -0.8793 35 1 1.8321 -5.1049 0.9006 36 1 2.5066 -7.5584 0.0591 37 1 3.4718 -9.4874 -1.3174 38 1 5.3730 -11.0165 -1.4572 39 1 6.3043 -13.5636 -0.4624 40 1 7.6577 -8.3705 1.0658 41 1 5.7461 -6.8527 1.1834 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000920581380.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:10 Heat of formation + Delta-G solvation = -54.370967 kcal Electronic energy + Delta-G solvation = -25748.594100 eV Core-core repulsion = 21787.143010 eV Total energy + Delta-G solvation = -3961.451090 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -41.45448 -40.17401 -39.28142 -37.27184 -36.15457 -34.46129 -33.08873 -32.77746 -30.68269 -29.68858 -29.42335 -28.01533 -26.84196 -24.87146 -23.59775 -21.72431 -20.86008 -20.52761 -19.82540 -19.37246 -18.57209 -17.43409 -17.32490 -17.02680 -16.56701 -16.00005 -15.47334 -15.21036 -14.97121 -14.39002 -14.11822 -14.00208 -13.77795 -13.47754 -13.30535 -12.93819 -12.75223 -12.70099 -12.60255 -12.43214 -12.10392 -12.00616 -11.70696 -11.45874 -11.16825 -10.96710 -10.71974 -10.55716 -10.50931 -10.17987 -9.76689 -9.46102 -9.08478 -9.01155 -8.72430 -8.59539 -7.56872 -7.17956 -6.91030 -4.29473 1.31940 2.05114 2.37410 2.54880 2.91791 2.92884 3.04093 3.08028 3.10623 3.15735 3.32221 3.83872 3.87785 4.47757 4.60095 4.74627 4.80667 4.92427 5.07971 5.12853 5.14341 5.32974 5.53336 5.60509 5.65719 5.81396 5.95284 6.17538 6.31600 6.40288 6.52476 6.54673 6.73320 6.92683 6.97967 7.06793 7.11186 7.26064 7.54062 7.64837 7.82929 7.88315 7.99973 8.22632 8.24161 8.52528 8.70216 8.81894 8.96853 9.99872 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.033341 B = 0.001930 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.616614 B =14505.163036 C =15109.311925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.103 4.103 3 C -0.030 4.030 4 N -0.547 5.547 5 H 0.421 0.579 6 C 0.086 3.914 7 C -0.225 4.225 8 C 0.539 3.461 9 O -0.517 6.517 10 O -0.331 6.331 11 C 0.055 3.945 12 C 0.499 3.501 13 O -0.514 6.514 14 N -0.643 5.643 15 C -0.023 4.023 16 C -0.099 4.099 17 C -0.171 4.171 18 C 0.113 3.887 19 C -0.464 4.464 20 H 0.082 0.918 21 C 0.088 3.912 22 N -0.768 5.768 23 Si 0.896 3.104 24 H -0.269 1.269 25 H -0.274 1.274 26 H -0.257 1.257 27 C -0.224 4.224 28 C -0.064 4.064 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.171 0.829 33 H 0.187 0.813 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.396 0.604 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.284 0.716 40 H 0.095 0.905 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.964 20.585 -0.219 22.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 C -0.157 4.157 4 N -0.140 5.140 5 H 0.258 0.742 6 C -0.052 4.052 7 C -0.234 4.234 8 C 0.385 3.615 9 O -0.407 6.407 10 O -0.246 6.246 11 C -0.023 4.023 12 C 0.284 3.716 13 O -0.389 6.389 14 N -0.288 5.288 15 C -0.115 4.115 16 C -0.120 4.120 17 C -0.191 4.191 18 C 0.110 3.890 19 C -0.492 4.492 20 H 0.100 0.900 21 C -0.134 4.134 22 N -0.391 5.391 23 Si 0.720 3.280 24 H -0.194 1.194 25 H -0.199 1.199 26 H -0.181 1.181 27 C -0.244 4.244 28 C -0.084 4.084 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.189 0.811 33 H 0.204 0.796 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.230 0.770 37 H 0.109 0.891 38 H 0.126 0.874 39 H 0.095 0.905 40 H 0.113 0.887 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.556 20.700 -0.213 22.400 hybrid contribution 0.281 -0.627 -0.380 0.785 sum -8.274 20.073 -0.593 21.720 Atomic orbital electron populations 1.20230 0.89086 1.02769 1.02162 1.20519 0.95660 0.89858 1.04854 1.21549 0.82324 0.99259 1.12532 1.41588 1.08535 1.06920 1.56997 0.74217 1.22582 0.99212 0.83339 1.00069 1.19607 0.93204 0.89204 1.21364 1.20202 0.83544 0.85368 0.72368 1.90801 1.18565 1.83912 1.47438 1.86604 1.38687 1.15006 1.84344 1.22663 0.95924 0.79050 1.04661 1.19955 0.89932 0.83030 0.78692 1.90716 1.23761 1.76493 1.47944 1.42733 1.09446 1.04333 1.72310 1.17006 0.89537 0.94299 1.10659 1.20166 0.98198 0.94732 0.98856 1.20620 0.94028 1.00093 1.04382 1.17607 0.92205 0.91150 0.88008 1.19519 0.95118 0.92773 1.41751 0.89960 1.25954 0.96122 0.98160 0.93186 1.69943 1.26032 1.11978 1.31126 0.86500 0.81605 0.79385 0.80542 1.19447 1.19869 1.18074 1.20592 0.98381 0.98740 1.06700 1.20307 0.92827 0.97944 0.97352 0.91591 0.92067 0.90367 0.81145 0.79613 0.88404 0.88516 0.77002 0.89146 0.87426 0.90549 0.88683 0.87937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.77 9.98 36.01 0.36 -0.42 16 2 C -0.10 -1.05 6.35 -102.53 -0.65 -1.70 16 3 C -0.03 -0.21 11.80 -16.85 -0.20 -0.41 16 4 N -0.55 -3.42 5.89 -12.61 -0.07 -3.49 16 5 H 0.42 1.10 8.96 -40.82 -0.37 0.74 16 6 C 0.09 0.79 11.79 -16.47 -0.19 0.60 16 7 C -0.23 -2.72 6.32 -103.01 -0.65 -3.37 16 8 C 0.54 7.74 7.95 34.33 0.27 8.01 16 9 O -0.52 -8.10 15.12 -19.30 -0.29 -8.39 16 10 O -0.33 -5.01 9.61 -47.42 -0.46 -5.47 16 11 C 0.05 0.76 5.96 36.01 0.21 0.97 16 12 C 0.50 8.84 7.72 -10.99 -0.08 8.76 16 13 O -0.51 -11.23 14.12 -14.10 -0.20 -11.43 16 14 N -0.64 -11.31 5.30 -9.74 -0.05 -11.36 16 15 C -0.02 -0.52 6.25 -83.57 -0.52 -1.04 16 16 C -0.10 -2.26 9.90 -39.79 -0.39 -2.65 16 17 C -0.17 -4.35 8.74 -39.26 -0.34 -4.70 16 18 C 0.11 3.01 5.57 -106.80 -0.60 2.42 16 19 C -0.46 -12.18 8.94 -37.85 -0.34 -12.52 16 20 H 0.08 2.09 8.02 -52.49 -0.42 1.67 16 21 C 0.09 2.15 4.77 -17.34 -0.08 2.07 16 22 N -0.77 -19.23 11.78 55.55 0.65 -18.58 16 23 Si 0.90 18.07 29.66 -169.99 -5.04 13.03 16 24 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 25 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 26 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 27 C -0.22 -5.70 9.74 -39.26 -0.38 -6.08 16 28 C -0.06 -1.55 8.59 -39.79 -0.34 -1.90 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.86 6.86 -51.93 -0.36 0.50 16 32 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 33 H 0.19 1.49 8.06 -52.49 -0.42 1.06 16 34 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.40 5.39 8.82 -40.82 -0.36 5.03 16 37 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 38 H 0.11 2.76 6.52 -52.48 -0.34 2.42 16 39 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 40 H 0.09 2.30 8.06 -52.49 -0.42 1.87 16 41 H 0.10 2.43 6.45 -52.49 -0.34 2.10 16 LS Contribution 361.90 15.07 5.45 5.45 Total: -1.00 -33.65 361.90 -8.64 -42.29 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -4.70 Total: 9.91 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -3.93 Total: -11.96 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.53 Total: -33.43 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.95 Total: -25.29 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.04 Total: 13.03 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.65 -8.64 -42.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920581380.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.081 kcal (2) G-P(sol) polarization free energy of solvation -33.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds