Wall clock time and date at job start Tue Mar 31 2020 14:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34432 * 126.81045 * 2 1 4 4 N 1.36435 * 109.08089 * 180.23132 * 3 2 1 5 5 H 0.96996 * 124.80668 * 179.72897 * 4 3 2 6 6 C 1.34626 * 110.38046 * 359.74260 * 4 3 2 7 7 C 1.37838 * 108.20913 * 0.02562 * 6 4 3 8 8 C 1.47105 * 127.02812 * 179.97438 * 7 6 4 9 9 O 1.21549 * 120.00333 * 180.02562 * 8 7 6 10 10 O 1.34790 * 119.99859 * 0.02562 * 8 7 6 11 11 C 1.45196 * 117.00235 * 180.02562 * 10 8 7 12 12 C 1.50705 * 109.47185 * 180.02562 * 11 10 8 13 13 O 1.21282 * 119.99932 * 359.72149 * 12 11 10 14 14 N 1.34771 * 119.99722 * 180.02562 * 12 11 10 15 15 C 1.39239 * 119.99792 * 176.70852 * 14 12 11 16 16 C 1.39479 * 119.83686 * 217.39742 * 15 14 12 17 17 C 1.36370 * 120.17023 * 179.75963 * 16 15 14 18 18 C 1.40868 * 119.83051 * 0.51710 * 17 16 15 19 19 C 1.41153 * 120.16370 * 179.71934 * 18 17 16 20 20 H 1.08001 * 119.99519 * 157.97855 * 19 18 17 21 21 C 1.39907 * 120.00247 * 337.97917 * 19 18 17 22 22 N 1.30873 * 119.99916 * 327.62160 * 21 19 18 23 23 Si 1.86801 * 119.99952 * 147.62215 * 21 19 18 24 24 H 1.48503 * 109.46786 * 94.98549 * 23 21 19 25 25 H 1.48496 * 109.46954 * 214.98425 * 23 21 19 26 26 H 1.48497 * 109.47178 * 334.98800 * 23 21 19 27 27 C 1.40868 * 119.67078 * 359.73779 * 18 17 16 28 28 C 1.36377 * 119.82982 * 0.02562 * 27 18 17 29 29 H 1.08995 * 109.47252 * 270.18304 * 1 2 3 30 30 H 1.09002 * 109.46711 * 30.18362 * 1 2 3 31 31 H 1.08999 * 109.46909 * 150.17212 * 1 2 3 32 32 H 1.07998 * 125.46166 * 359.97438 * 3 2 1 33 33 H 1.08002 * 125.89478 * 180.02562 * 6 4 3 34 34 H 1.08998 * 109.47461 * 60.00080 * 11 10 8 35 35 H 1.09001 * 109.47298 * 300.00135 * 11 10 8 36 36 H 0.97001 * 120.00585 * 356.70678 * 14 12 11 37 37 H 1.08002 * 119.91261 * 0.02571 * 16 15 14 38 38 H 1.08006 * 120.08792 * 180.25128 * 17 16 15 39 39 H 0.96995 * 120.00099 * 179.97438 * 22 21 19 40 40 H 1.07993 * 120.08737 * 179.97438 * 27 18 17 41 41 H 1.07996 * 119.91688 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3125 1.0763 0.0000 4 7 3.6121 0.6608 -0.0052 5 1 4.3819 1.2508 -0.0100 6 6 3.6743 -0.6840 -0.0030 7 6 2.3863 -1.1748 0.0033 8 6 1.9767 -2.5877 0.0070 9 8 0.7965 -2.8784 0.0121 10 8 2.9102 -3.5600 0.0049 11 6 2.4336 -4.9315 0.0083 12 6 3.6108 -5.8724 0.0059 13 8 4.7403 -5.4306 -0.0033 14 7 3.4084 -7.2049 0.0079 15 6 4.4938 -8.0740 -0.0636 16 6 4.3917 -9.2525 -0.8026 17 6 5.4522 -10.1063 -0.8812 18 6 6.6494 -9.8007 -0.2046 19 6 7.7495 -10.6823 -0.2764 20 1 8.7471 -10.3178 -0.0804 21 6 7.5475 -12.0280 -0.6013 22 7 6.4445 -12.6307 -0.2369 23 14 8.8523 -12.9645 -1.5552 24 1 9.7323 -13.6926 -0.6060 25 1 8.1969 -13.9360 -2.4672 26 1 9.6650 -12.0095 -2.3505 27 6 6.7432 -8.6112 0.5441 28 6 5.6758 -7.7648 0.6095 29 1 -0.3633 0.0033 1.0276 30 1 -0.3633 0.8884 -0.5167 31 1 -0.3633 -0.8915 -0.5112 32 1 1.9837 2.1050 -0.0004 33 1 4.5776 -1.2761 -0.0057 34 1 1.8258 -5.1072 -0.8793 35 1 1.8321 -5.1049 0.9006 36 1 2.5066 -7.5584 0.0591 37 1 3.4718 -9.4874 -1.3174 38 1 5.3730 -11.0165 -1.4572 39 1 6.3043 -13.5636 -0.4624 40 1 7.6577 -8.3705 1.0658 41 1 5.7461 -6.8527 1.1834 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000920581380.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:07 Heat of formation + Delta-G solvation = -74.411244 kcal Electronic energy + Delta-G solvation = -25749.463111 eV Core-core repulsion = 21787.143010 eV Total energy + Delta-G solvation = -3962.320101 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -42.17157 -41.42409 -40.64648 -39.02909 -37.32281 -36.18993 -34.85096 -33.44189 -31.76085 -31.44763 -30.98487 -29.38941 -27.47860 -26.60792 -24.61952 -23.46431 -22.60798 -21.42572 -21.36809 -20.20014 -19.33351 -19.20232 -18.67912 -18.20484 -17.70121 -17.58826 -16.99571 -16.55462 -16.17788 -15.77415 -15.36346 -15.16534 -14.95309 -14.67047 -14.45434 -14.13817 -14.02293 -13.90476 -13.80931 -13.69654 -13.58473 -13.30748 -13.30298 -12.84460 -12.69099 -12.41168 -12.33388 -11.92340 -11.83676 -11.60164 -11.56519 -11.16880 -10.80132 -10.50190 -9.74983 -9.48826 -9.22952 -9.03777 -8.74355 -6.24420 0.43877 0.78196 1.13264 1.29663 1.36329 1.41471 1.42976 1.54113 1.71185 2.19737 2.23167 2.32651 2.56860 2.64366 3.61030 3.71884 3.89140 3.98327 4.08006 4.09467 4.27300 4.38420 4.40138 4.48031 4.67935 4.85710 4.89440 4.93361 5.09274 5.13377 5.15120 5.20603 5.25821 5.37289 5.41754 5.63340 5.77156 5.85086 5.87970 6.00701 6.07126 6.34088 6.57925 6.60482 6.65098 6.83465 6.88278 6.97085 7.31008 8.19616 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.033341 B = 0.001930 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.616614 B =14505.163036 C =15109.311925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.137 4.137 3 C -0.006 4.006 4 N -0.528 5.528 5 H 0.441 0.559 6 C 0.092 3.908 7 C -0.269 4.269 8 C 0.536 3.464 9 O -0.540 6.540 10 O -0.347 6.347 11 C 0.062 3.938 12 C 0.502 3.498 13 O -0.558 6.558 14 N -0.634 5.634 15 C -0.011 4.011 16 C -0.097 4.097 17 C -0.190 4.190 18 C 0.084 3.916 19 C -0.503 4.503 20 H 0.076 0.924 21 C 0.052 3.948 22 N -0.797 5.797 23 Si 0.972 3.028 24 H -0.260 1.260 25 H -0.261 1.261 26 H -0.262 1.262 27 C -0.245 4.245 28 C -0.075 4.075 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.051 0.949 32 H 0.211 0.789 33 H 0.194 0.806 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.419 0.581 37 H 0.126 0.874 38 H 0.099 0.901 39 H 0.295 0.705 40 H 0.093 0.907 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.780 22.147 -0.916 24.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.142 4.142 3 C -0.134 4.134 4 N -0.122 5.122 5 H 0.282 0.718 6 C -0.048 4.048 7 C -0.277 4.277 8 C 0.385 3.615 9 O -0.432 6.432 10 O -0.263 6.263 11 C -0.015 4.015 12 C 0.289 3.711 13 O -0.436 6.436 14 N -0.281 5.281 15 C -0.104 4.104 16 C -0.116 4.116 17 C -0.210 4.210 18 C 0.081 3.919 19 C -0.530 4.530 20 H 0.094 0.906 21 C -0.168 4.168 22 N -0.420 5.420 23 Si 0.792 3.208 24 H -0.184 1.184 25 H -0.185 1.185 26 H -0.186 1.186 27 C -0.265 4.265 28 C -0.095 4.095 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.227 0.773 33 H 0.211 0.789 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.257 0.743 37 H 0.144 0.856 38 H 0.117 0.883 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.402 22.287 -0.897 24.206 hybrid contribution 0.467 -0.944 -0.113 1.059 sum -8.935 21.343 -1.010 23.160 Atomic orbital electron populations 1.20180 0.88926 1.02659 1.02068 1.20800 0.96310 0.90165 1.06968 1.22088 0.81836 1.00152 1.09293 1.41638 1.09353 1.06177 1.55076 0.71838 1.22652 0.98499 0.84611 0.99087 1.19836 0.95106 0.88514 1.24238 1.20642 0.83162 0.85986 0.71740 1.90774 1.19209 1.84244 1.48931 1.86596 1.39528 1.15509 1.84650 1.22634 0.93891 0.78027 1.06948 1.20587 0.90434 0.83168 0.76867 1.90702 1.25932 1.77226 1.49705 1.42598 1.09440 1.04043 1.72020 1.17061 0.90080 0.94498 1.08729 1.20446 0.98773 0.94093 0.98330 1.20656 0.94715 1.00617 1.05009 1.17928 0.93206 0.91854 0.88890 1.19721 0.94858 0.94150 1.44302 0.90626 1.26737 0.98495 0.98336 0.93248 1.69936 1.27667 1.12901 1.31481 0.85364 0.78601 0.77844 0.79001 1.18409 1.18476 1.18550 1.20720 0.99069 0.99294 1.07422 1.20420 0.93480 0.97712 0.97891 0.91712 0.89576 0.92993 0.77267 0.78945 0.86076 0.86075 0.74301 0.85645 0.88251 0.89416 0.88893 0.87993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.41 9.98 71.24 0.71 -0.69 16 2 C -0.14 -2.60 6.35 -18.51 -0.12 -2.71 16 3 C -0.01 -0.07 11.80 83.11 0.98 0.91 16 4 N -0.53 -5.08 5.89 -193.81 -1.14 -6.22 16 5 H 0.44 0.78 8.96 -92.71 -0.83 -0.05 16 6 C 0.09 1.56 11.79 84.17 0.99 2.55 16 7 C -0.27 -6.32 6.32 -18.82 -0.12 -6.44 16 8 C 0.54 15.37 7.95 70.15 0.56 15.92 16 9 O -0.54 -16.94 15.12 19.68 0.30 -16.65 16 10 O -0.35 -10.36 9.61 -50.62 -0.49 -10.85 16 11 C 0.06 1.62 5.96 71.24 0.42 2.05 16 12 C 0.50 17.30 7.72 87.66 0.68 17.97 16 13 O -0.56 -24.45 14.12 15.76 0.22 -24.22 16 14 N -0.63 -21.26 5.30 -303.11 -1.61 -22.87 16 15 C -0.01 -0.48 6.25 38.57 0.24 -0.24 16 16 C -0.10 -4.31 9.90 22.13 0.22 -4.09 16 17 C -0.19 -9.81 8.74 22.48 0.20 -9.62 16 18 C 0.08 4.63 5.57 -21.28 -0.12 4.51 16 19 C -0.50 -27.38 8.94 23.39 0.21 -27.17 16 20 H 0.08 4.04 8.02 -2.91 -0.02 4.02 16 21 C 0.05 2.56 4.77 85.24 0.41 2.97 16 22 N -0.80 -40.28 11.78 21.82 0.26 -40.03 16 23 Si 0.97 37.22 29.66 68.60 2.03 39.25 16 24 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 25 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 26 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 27 C -0.25 -12.97 9.74 22.48 0.22 -12.75 16 28 C -0.08 -3.69 8.59 22.14 0.19 -3.50 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.05 1.16 6.86 -2.39 -0.02 1.14 16 32 H 0.21 0.59 8.06 -2.91 -0.02 0.57 16 33 H 0.19 2.90 8.06 -2.91 -0.02 2.88 16 34 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.42 10.29 8.82 -92.71 -0.82 9.47 16 37 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 38 H 0.10 5.20 6.52 -2.91 -0.02 5.18 16 39 H 0.29 13.21 8.30 -92.71 -0.77 12.44 16 40 H 0.09 4.76 8.06 -2.91 -0.02 4.74 16 41 H 0.10 4.96 6.45 -2.91 -0.02 4.94 16 Total: -1.00 -76.24 361.90 4.70 -71.54 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: -0.55 Total: 30.37 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: 5.67 Total: -20.33 kcal Atomic # 7 Polarization: -66.63 SS G_CDS: -2.49 Total: -69.12 kcal Atomic # 8 Polarization: -51.75 SS G_CDS: 0.03 Total: -51.72 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 2.03 Total: 39.25 kcal Total: -76.24 4.70 -71.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920581380.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.869 kcal (2) G-P(sol) polarization free energy of solvation -76.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds