Wall clock time and date at job start Tue Mar 31 2020 16:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46501 * 109.47297 * 2 1 4 4 C 1.34781 * 119.99852 * 105.73973 * 3 2 1 5 5 O 1.21585 * 119.99607 * 186.72983 * 4 3 2 6 6 C 1.47572 * 120.00200 * 6.73532 * 4 3 2 7 7 C 1.39761 * 120.12754 * 325.83195 * 6 4 3 8 8 C 1.37919 * 119.87362 * 180.02562 * 7 6 4 9 9 F 1.35097 * 119.92519 * 180.02562 * 8 7 6 10 10 C 1.38938 * 120.14634 * 359.97431 * 8 7 6 11 11 F 1.35102 * 119.86689 * 180.02562 * 10 8 7 12 12 C 1.38453 * 120.27062 * 0.04559 * 10 8 7 13 13 C 1.38219 * 120.11779 * 0.23429 * 12 10 8 14 14 F 1.35095 * 120.07597 * 179.72627 * 13 12 10 15 15 C 1.46500 * 119.99989 * 285.74366 * 3 2 1 16 16 C 1.53948 * 113.73914 * 222.78453 * 15 3 2 17 17 N 1.47814 * 86.03519 * 222.08364 * 16 15 3 18 18 C 1.36936 * 134.45419 * 204.64581 * 17 16 15 19 19 H 1.08003 * 119.99942 * 179.86935 * 18 17 16 20 20 C 1.38810 * 120.00405 * 359.86613 * 18 17 16 21 21 N 1.31616 * 119.99851 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00250 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47012 * 59.99817 * 22 20 18 24 24 H 1.48503 * 109.47169 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47030 * 299.99964 * 22 20 18 26 26 C 1.47580 * 91.05149 * 24.54967 * 17 16 15 27 27 H 1.08998 * 109.47275 * 300.00289 * 1 2 3 28 28 H 1.09005 * 109.47069 * 59.99756 * 1 2 3 29 29 H 1.08999 * 109.47131 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47369 * 240.00250 * 2 1 3 31 31 H 1.08997 * 109.47339 * 120.00028 * 2 1 3 32 32 H 1.07996 * 120.06111 * 0.02562 * 7 6 4 33 33 H 1.07997 * 119.94264 * 179.97438 * 12 10 8 34 34 H 1.08996 * 112.94602 * 354.37291 * 15 3 2 35 35 H 1.09002 * 113.77388 * 336.34920 * 16 15 3 36 36 H 1.09004 * 113.76673 * 107.74629 * 16 15 3 37 37 H 0.97001 * 120.00011 * 179.97438 * 21 20 18 38 38 H 1.08997 * 113.77069 * 221.15085 * 26 17 16 39 39 H 1.09003 * 113.76457 * 89.75489 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.5415 1.9110 1.1235 5 8 2.8336 3.0906 1.1604 6 6 2.7598 1.0593 2.3087 7 6 1.8761 0.0149 2.5944 8 6 2.0848 -0.7775 3.7037 9 9 1.2316 -1.7877 3.9806 10 6 3.1713 -0.5399 4.5366 11 9 3.3706 -1.3200 5.6215 12 6 4.0502 0.4933 4.2594 13 6 3.8483 1.2979 3.1539 14 9 4.7034 2.3093 2.8874 15 6 1.9379 2.1866 -1.2211 16 6 3.2034 3.0178 -1.4997 17 7 2.2796 4.1105 -1.8708 18 6 2.3746 5.2152 -2.6743 19 1 1.5288 5.8780 -2.7833 20 6 3.5579 5.4834 -3.3487 21 7 4.5884 4.6755 -3.2163 22 14 3.6876 6.9908 -4.4443 23 1 3.4512 8.2130 -3.6346 24 1 5.0438 7.0499 -5.0464 25 1 2.6706 6.9076 -5.5233 26 6 1.2138 3.5316 -1.0300 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.0314 -0.1713 1.9477 33 1 4.8927 0.6736 4.9106 34 1 1.5878 1.6182 -2.0827 35 1 3.7964 3.2272 -0.6094 36 1 3.8003 2.6439 -2.3317 37 1 5.4152 4.8627 -3.6878 38 1 0.2252 3.5672 -1.4876 39 1 1.2212 3.8923 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000951569843.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:57 Heat of formation + Delta-G solvation = -41.416307 kcal Electronic energy + Delta-G solvation = -28525.342814 eV Core-core repulsion = 24022.596740 eV Total energy + Delta-G solvation = -4502.746074 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 3.03 seconds Orbital eigenvalues (eV) -49.93808 -49.16520 -48.99942 -40.72267 -38.67861 -36.80069 -35.75581 -32.28399 -31.41877 -30.71291 -30.13159 -27.40484 -24.81386 -24.69227 -24.14491 -23.22598 -22.72621 -20.55365 -19.25532 -18.66310 -18.14955 -17.57485 -16.96596 -16.79939 -16.53038 -16.01644 -15.75540 -15.61084 -15.41174 -15.24823 -15.08817 -14.66120 -14.57678 -14.41256 -13.82995 -13.52389 -13.31945 -12.95656 -12.66002 -12.54471 -12.36312 -12.07444 -11.96937 -11.71581 -11.45515 -11.28510 -11.08945 -10.81238 -10.63879 -10.15556 -9.98363 -9.67861 -9.45616 -9.37103 -9.02467 -8.63404 -8.21550 -6.75645 -5.68717 -2.99548 0.06361 0.34392 2.36740 2.91992 3.09976 3.22892 3.44732 3.48833 3.50125 3.56574 3.89819 3.91772 4.17988 4.46247 4.54446 4.73015 4.99305 5.00707 5.07191 5.12852 5.21157 5.30742 5.37120 5.47167 5.54413 5.56988 5.64310 5.69048 5.82344 6.06052 6.15082 6.32780 6.53253 6.59579 6.92927 7.32226 7.52077 7.61153 7.65477 8.04988 8.32828 9.12204 9.78574 10.68734 11.48589 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.022067 B = 0.003339 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.583052 B = 8383.533979 C = 9318.109818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.068 3.932 3 N -0.590 5.590 4 C 0.550 3.450 5 O -0.486 6.486 6 C -0.142 4.142 7 C -0.090 4.090 8 C 0.049 3.951 9 F -0.121 7.121 10 C 0.117 3.883 11 F -0.117 7.117 12 C -0.173 4.173 13 C 0.180 3.820 14 F -0.100 7.100 15 C 0.090 3.910 16 C 0.156 3.844 17 N -0.602 5.602 18 C -0.218 4.218 19 H 0.079 0.921 20 C -0.008 4.008 21 N -0.920 5.920 22 Si 0.912 3.088 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.112 3.888 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.183 0.817 33 H 0.166 0.834 34 H 0.107 0.893 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.253 0.747 38 H 0.037 0.963 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.607 -16.607 14.276 22.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.055 4.055 3 N -0.324 5.324 4 C 0.335 3.665 5 O -0.360 6.360 6 C -0.146 4.146 7 C -0.109 4.109 8 C 0.029 3.971 9 F -0.100 7.100 10 C 0.096 3.904 11 F -0.096 7.096 12 C -0.192 4.192 13 C 0.159 3.841 14 F -0.078 7.078 15 C -0.012 4.012 16 C 0.030 3.970 17 N -0.329 5.329 18 C -0.346 4.346 19 H 0.097 0.903 20 C -0.204 4.204 21 N -0.567 5.567 22 Si 0.743 3.257 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C -0.015 4.015 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.199 0.801 33 H 0.183 0.817 34 H 0.125 0.875 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.266 -15.743 14.066 21.758 hybrid contribution 0.194 0.585 -0.264 0.671 sum -5.073 -15.157 13.802 21.118 Atomic orbital electron populations 1.22260 0.95472 1.02421 1.03399 1.22410 0.94849 0.83852 1.04418 1.48014 1.60120 1.13189 1.11036 1.17710 0.79388 0.87165 0.82191 1.90957 1.48782 1.14594 1.81689 1.20200 0.96784 0.98827 0.98831 1.21862 1.01273 0.92576 0.95142 1.17414 0.91138 0.91472 0.97122 1.91567 1.68213 1.56867 1.93333 1.17409 0.95202 0.92054 0.85706 1.91580 1.94503 1.72451 1.51024 1.20930 1.02613 0.96133 0.99572 1.17222 0.88005 0.86058 0.92835 1.91683 1.67224 1.55933 1.92941 1.24173 1.02521 0.90389 0.84165 1.22714 0.91175 0.84665 0.98455 1.45655 1.10266 1.27322 1.49610 1.18941 0.97968 0.99947 1.17778 0.90328 1.24772 0.95771 0.99067 1.00836 1.69814 1.03019 1.37955 1.45933 0.86198 0.76742 0.82541 0.80254 1.21216 1.21592 1.21153 1.22949 0.92785 0.90005 0.95781 0.92162 0.91041 0.91222 0.90172 0.88504 0.80059 0.81663 0.87495 0.93034 0.91318 0.93682 0.94471 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.46 9.24 37.15 0.34 -1.11 16 2 C 0.07 0.67 5.62 -4.04 -0.02 0.64 16 3 N -0.59 -8.81 2.77 -169.12 -0.47 -9.28 16 4 C 0.55 9.10 6.72 -12.45 -0.08 9.02 16 5 O -0.49 -10.45 11.76 5.29 0.06 -10.39 16 6 C -0.14 -1.79 5.53 -104.91 -0.58 -2.37 16 7 C -0.09 -0.85 7.40 -39.13 -0.29 -1.14 16 8 C 0.05 0.45 7.29 -39.44 -0.29 0.17 16 9 F -0.12 -1.15 17.17 2.25 0.04 -1.11 16 10 C 0.12 1.09 7.31 -39.24 -0.29 0.80 16 11 F -0.12 -1.12 17.17 2.25 0.04 -1.08 16 12 C -0.17 -1.60 9.99 -39.51 -0.39 -1.99 16 13 C 0.18 2.22 7.24 -38.98 -0.28 1.93 16 14 F -0.10 -1.53 16.07 2.25 0.04 -1.50 16 15 C 0.09 1.69 4.40 -70.14 -0.31 1.38 16 16 C 0.16 3.86 6.79 -2.84 -0.02 3.84 16 17 N -0.60 -16.21 3.70 -177.87 -0.66 -16.86 16 18 C -0.22 -6.38 10.70 -15.06 -0.16 -6.54 16 19 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 21 N -0.92 -28.15 11.39 55.49 0.63 -27.52 16 22 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 26 C 0.11 2.42 8.27 -2.97 -0.02 2.40 16 27 H 0.06 0.50 7.28 -51.93 -0.38 0.12 16 28 H 0.07 0.67 8.06 -51.93 -0.42 0.25 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.10 0.81 3.66 -53.56 -0.20 0.61 16 32 H 0.18 1.43 3.52 -52.49 -0.18 1.25 16 33 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.11 1.82 8.07 -51.93 -0.42 1.40 16 35 H 0.05 1.40 5.77 -51.93 -0.30 1.10 16 36 H 0.07 1.84 7.17 -51.93 -0.37 1.47 16 37 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.05 1.17 6.25 -51.93 -0.32 0.85 16 LS Contribution 331.31 15.07 4.99 4.99 Total: -1.00 -34.32 331.31 -6.67 -40.99 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -3.83 Total: -2.70 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: -2.49 Total: 6.70 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: -0.50 Total: -53.66 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.06 Total: -10.39 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.11 Total: -3.68 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.32 -6.67 -40.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951569843.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.422 kcal (2) G-P(sol) polarization free energy of solvation -34.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.03 seconds