Wall clock time and date at job start Tue Mar 31 2020 16:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46501 * 109.47297 * 2 1 4 4 C 1.34781 * 119.99852 * 105.73973 * 3 2 1 5 5 O 1.21585 * 119.99607 * 186.72983 * 4 3 2 6 6 C 1.47572 * 120.00200 * 6.73532 * 4 3 2 7 7 C 1.39761 * 120.12754 * 325.83195 * 6 4 3 8 8 C 1.37919 * 119.87362 * 180.02562 * 7 6 4 9 9 F 1.35097 * 119.92519 * 180.02562 * 8 7 6 10 10 C 1.38938 * 120.14634 * 359.97431 * 8 7 6 11 11 F 1.35102 * 119.86689 * 180.02562 * 10 8 7 12 12 C 1.38453 * 120.27062 * 0.04559 * 10 8 7 13 13 C 1.38219 * 120.11779 * 0.23429 * 12 10 8 14 14 F 1.35095 * 120.07597 * 179.72627 * 13 12 10 15 15 C 1.46500 * 119.99989 * 285.74366 * 3 2 1 16 16 C 1.53948 * 113.73914 * 222.78453 * 15 3 2 17 17 N 1.47814 * 86.03519 * 222.08364 * 16 15 3 18 18 C 1.36936 * 134.45419 * 204.64581 * 17 16 15 19 19 H 1.08003 * 119.99942 * 179.86935 * 18 17 16 20 20 C 1.38810 * 120.00405 * 359.86613 * 18 17 16 21 21 N 1.31616 * 119.99851 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00250 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47012 * 59.99817 * 22 20 18 24 24 H 1.48503 * 109.47169 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47030 * 299.99964 * 22 20 18 26 26 C 1.47580 * 91.05149 * 24.54967 * 17 16 15 27 27 H 1.08998 * 109.47275 * 300.00289 * 1 2 3 28 28 H 1.09005 * 109.47069 * 59.99756 * 1 2 3 29 29 H 1.08999 * 109.47131 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47369 * 240.00250 * 2 1 3 31 31 H 1.08997 * 109.47339 * 120.00028 * 2 1 3 32 32 H 1.07996 * 120.06111 * 0.02562 * 7 6 4 33 33 H 1.07997 * 119.94264 * 179.97438 * 12 10 8 34 34 H 1.08996 * 112.94602 * 354.37291 * 15 3 2 35 35 H 1.09002 * 113.77388 * 336.34920 * 16 15 3 36 36 H 1.09004 * 113.76673 * 107.74629 * 16 15 3 37 37 H 0.97001 * 120.00011 * 179.97438 * 21 20 18 38 38 H 1.08997 * 113.77069 * 221.15085 * 26 17 16 39 39 H 1.09003 * 113.76457 * 89.75489 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.5415 1.9110 1.1235 5 8 2.8336 3.0906 1.1604 6 6 2.7598 1.0593 2.3087 7 6 1.8761 0.0149 2.5944 8 6 2.0848 -0.7775 3.7037 9 9 1.2316 -1.7877 3.9806 10 6 3.1713 -0.5399 4.5366 11 9 3.3706 -1.3200 5.6215 12 6 4.0502 0.4933 4.2594 13 6 3.8483 1.2979 3.1539 14 9 4.7034 2.3093 2.8874 15 6 1.9379 2.1866 -1.2211 16 6 3.2034 3.0178 -1.4997 17 7 2.2796 4.1105 -1.8708 18 6 2.3746 5.2152 -2.6743 19 1 1.5288 5.8780 -2.7833 20 6 3.5579 5.4834 -3.3487 21 7 4.5884 4.6755 -3.2163 22 14 3.6876 6.9908 -4.4443 23 1 3.4512 8.2130 -3.6346 24 1 5.0438 7.0499 -5.0464 25 1 2.6706 6.9076 -5.5233 26 6 1.2138 3.5316 -1.0300 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.0314 -0.1713 1.9477 33 1 4.8927 0.6736 4.9106 34 1 1.5878 1.6182 -2.0827 35 1 3.7964 3.2272 -0.6094 36 1 3.8003 2.6439 -2.3317 37 1 5.4152 4.8627 -3.6878 38 1 0.2252 3.5672 -1.4876 39 1 1.2212 3.8923 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000951569843.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:55 Heat of formation + Delta-G solvation = -63.154587 kcal Electronic energy + Delta-G solvation = -28526.285456 eV Core-core repulsion = 24022.596740 eV Total energy + Delta-G solvation = -4503.688716 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.71149 -50.22204 -49.76865 -41.96559 -39.84493 -38.37123 -36.95196 -34.24713 -32.51888 -31.67131 -31.12571 -29.29856 -26.58178 -26.06424 -25.24207 -24.28241 -23.86255 -22.06183 -20.56233 -19.54043 -19.08733 -18.78967 -18.56573 -17.84102 -17.66476 -17.14820 -16.80135 -16.75774 -16.72972 -16.27912 -16.18137 -16.08950 -15.78594 -15.58469 -15.39348 -14.62852 -14.37990 -14.26406 -13.94759 -13.77698 -13.54280 -13.36909 -13.06104 -12.96018 -12.87665 -12.76411 -12.65646 -12.46792 -12.03401 -11.96845 -11.80856 -11.48005 -11.08037 -10.66934 -10.29751 -9.93085 -9.58102 -8.88851 -7.90258 -5.23767 -0.82613 -0.46341 1.36289 1.43171 1.48310 1.54184 1.73602 2.07597 2.34106 2.49053 2.70263 3.01816 3.07401 3.27098 3.30254 3.50627 3.65767 3.80751 3.94705 4.14710 4.24887 4.27421 4.33690 4.34600 4.50202 4.55387 4.62230 4.64611 4.83675 4.89050 4.96458 5.03990 5.23658 5.24564 5.32442 5.43236 5.48760 5.82556 5.91685 6.34851 6.90714 7.06524 7.60010 8.56984 9.26871 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.022067 B = 0.003339 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.583052 B = 8383.533979 C = 9318.109818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.060 3.940 3 N -0.587 5.587 4 C 0.545 3.455 5 O -0.548 6.548 6 C -0.154 4.154 7 C -0.071 4.071 8 C 0.062 3.938 9 F -0.116 7.116 10 C 0.127 3.873 11 F -0.114 7.114 12 C -0.154 4.154 13 C 0.158 3.842 14 F -0.126 7.126 15 C 0.130 3.870 16 C 0.152 3.848 17 N -0.632 5.632 18 C -0.237 4.237 19 H 0.084 0.916 20 C -0.068 4.068 21 N -0.954 5.954 22 Si 0.983 3.017 23 H -0.282 1.282 24 H -0.293 1.293 25 H -0.269 1.269 26 C 0.113 3.887 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.117 0.883 32 H 0.203 0.797 33 H 0.190 0.810 34 H 0.134 0.866 35 H 0.020 0.980 36 H 0.039 0.961 37 H 0.248 0.752 38 H 0.060 0.940 39 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.441 -18.929 15.042 25.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.060 4.060 3 N -0.319 5.319 4 C 0.333 3.667 5 O -0.426 6.426 6 C -0.158 4.158 7 C -0.090 4.090 8 C 0.041 3.959 9 F -0.094 7.094 10 C 0.106 3.894 11 F -0.092 7.092 12 C -0.173 4.173 13 C 0.137 3.863 14 F -0.105 7.105 15 C 0.026 3.974 16 C 0.026 3.974 17 N -0.359 5.359 18 C -0.366 4.366 19 H 0.101 0.899 20 C -0.261 4.261 21 N -0.602 5.602 22 Si 0.811 3.189 23 H -0.208 1.208 24 H -0.219 1.219 25 H -0.195 1.195 26 C -0.013 4.013 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.121 0.879 30 H 0.113 0.887 31 H 0.135 0.865 32 H 0.219 0.781 33 H 0.207 0.793 34 H 0.152 0.848 35 H 0.038 0.962 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -7.156 -18.137 14.858 24.514 hybrid contribution 0.734 1.201 -0.356 1.452 sum -6.422 -16.936 14.502 23.203 Atomic orbital electron populations 1.22267 0.93562 1.04472 1.02992 1.22816 0.96316 0.80661 1.06221 1.47984 1.59752 1.14870 1.09252 1.18302 0.78129 0.86870 0.83373 1.90927 1.51192 1.17430 1.83034 1.19859 0.98329 0.99795 0.97859 1.21845 1.00712 0.91097 0.95298 1.17321 0.90840 0.91101 0.96613 1.91594 1.68041 1.56579 1.93222 1.17405 0.94879 0.91621 0.85489 1.91601 1.94448 1.72268 1.50880 1.21013 1.02994 0.94915 0.98360 1.17521 0.88165 0.86420 0.94171 1.91619 1.68145 1.57363 1.93327 1.23440 0.97402 0.90111 0.86477 1.22518 0.92838 0.86110 0.95936 1.46082 1.12345 1.27373 1.50088 1.19399 0.98310 1.00921 1.17936 0.89864 1.25689 0.95458 1.02251 1.02688 1.70034 1.03326 1.39771 1.47119 0.85091 0.76698 0.78648 0.78503 1.20815 1.21872 1.19465 1.23007 0.92884 0.91118 0.94262 0.92084 0.92038 0.87894 0.88673 0.86545 0.78099 0.79280 0.84815 0.96189 0.94279 0.94318 0.92221 0.94591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 9.24 71.98 0.66 -1.54 16 2 C 0.06 1.01 5.62 86.38 0.49 1.49 16 3 N -0.59 -17.09 2.77 -807.22 -2.24 -19.33 16 4 C 0.55 18.39 6.72 86.71 0.58 18.97 16 5 O -0.55 -24.97 11.76 -3.98 -0.05 -25.02 16 6 C -0.15 -3.76 5.53 -20.05 -0.11 -3.87 16 7 C -0.07 -1.15 7.40 22.56 0.17 -0.98 16 8 C 0.06 0.93 7.29 22.36 0.16 1.09 16 9 F -0.12 -1.72 17.17 44.97 0.77 -0.95 16 10 C 0.13 1.97 7.31 22.49 0.16 2.13 16 11 F -0.11 -1.79 17.17 44.97 0.77 -1.02 16 12 C -0.15 -2.54 9.99 22.32 0.22 -2.32 16 13 C 0.16 3.86 7.24 22.66 0.16 4.03 16 14 F -0.13 -4.10 16.07 44.97 0.72 -3.37 16 15 C 0.13 4.86 4.40 46.75 0.21 5.07 16 16 C 0.15 7.92 6.79 86.44 0.59 8.51 16 17 N -0.63 -35.16 3.70 -716.66 -2.65 -37.81 16 18 C -0.24 -14.21 10.70 84.03 0.90 -13.31 16 19 H 0.08 4.73 7.83 -2.91 -0.02 4.71 16 20 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 21 N -0.95 -60.76 11.39 21.65 0.25 -60.51 16 22 Si 0.98 47.80 29.55 68.60 2.03 49.83 16 23 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 24 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 25 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 26 C 0.11 4.97 8.27 86.49 0.72 5.69 16 27 H 0.06 0.78 7.28 -2.39 -0.02 0.77 16 28 H 0.06 0.94 8.06 -2.38 -0.02 0.92 16 29 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.12 1.52 3.66 -3.92 -0.01 1.51 16 32 H 0.20 2.40 3.52 -2.91 -0.01 2.39 16 33 H 0.19 2.17 8.06 -2.91 -0.02 2.14 16 34 H 0.13 4.33 8.07 -2.39 -0.02 4.31 16 35 H 0.02 1.18 5.77 -2.39 -0.01 1.17 16 36 H 0.04 2.22 7.17 -2.38 -0.02 2.20 16 37 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 38 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.04 1.72 6.25 -2.39 -0.01 1.70 16 Total: -1.00 -80.04 331.31 6.10 -73.94 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: 1.12 Total: 2.91 kcal Atomic # 6 Polarization: 15.96 SS G_CDS: 5.38 Total: 21.34 kcal Atomic # 7 Polarization: -113.00 SS G_CDS: -4.65 Total: -117.65 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.05 Total: -25.02 kcal Atomic # 9 Polarization: -7.62 SS G_CDS: 2.27 Total: -5.35 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.83 kcal Total: -80.04 6.10 -73.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951569843.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.785 kcal (2) G-P(sol) polarization free energy of solvation -80.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds