Wall clock time and date at job start Tue Mar 31 2020 16:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47042 * 2 1 4 4 C 1.34774 * 120.00236 * 269.99657 * 3 2 1 5 5 O 1.21579 * 120.00140 * 179.97438 * 4 3 2 6 6 C 1.47550 * 119.99923 * 0.02562 * 4 3 2 7 7 C 1.39920 * 120.18086 * 89.71484 * 6 4 3 8 8 F 1.35099 * 120.07393 * 0.02562 * 7 6 4 9 9 C 1.38169 * 119.85262 * 179.78871 * 7 6 4 10 10 C 1.38334 * 120.21413 * 0.49356 * 9 7 6 11 11 C 1.38446 * 120.35832 * 359.74019 * 10 9 7 12 12 F 1.35099 * 119.92787 * 180.02562 * 11 10 9 13 13 C 1.38441 * 120.14317 * 0.02562 * 11 10 9 14 14 F 1.35097 * 120.11176 * 180.02562 * 13 11 10 15 15 C 1.46498 * 119.99874 * 90.00079 * 3 2 1 16 16 C 1.53499 * 114.20953 * 119.99844 * 15 3 2 17 17 N 1.47070 * 87.98335 * 87.71511 * 16 15 3 18 18 C 1.36937 * 136.05998 * 207.08074 * 17 16 15 19 19 H 1.07995 * 119.99527 * 8.82897 * 18 17 16 20 20 C 1.38808 * 120.00327 * 188.82578 * 18 17 16 21 21 N 1.31615 * 120.00040 * 174.13722 * 20 18 17 22 22 Si 1.86806 * 119.99735 * 354.13369 * 20 18 17 23 23 H 1.48503 * 109.46864 * 174.98957 * 22 20 18 24 24 H 1.48504 * 109.47248 * 294.98430 * 22 20 18 25 25 H 1.48496 * 109.47264 * 54.98717 * 22 20 18 26 26 C 1.47070 * 87.88237 * 27.34408 * 17 16 15 27 27 H 1.09000 * 109.47454 * 60.00106 * 1 2 3 28 28 H 1.09008 * 109.47068 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47620 * 299.99772 * 1 2 3 30 30 H 1.09004 * 109.47352 * 240.00208 * 2 1 3 31 31 H 1.09006 * 109.47075 * 120.00075 * 2 1 3 32 32 H 1.08007 * 119.89550 * 180.23298 * 9 7 6 33 33 H 1.08004 * 119.82601 * 179.71852 * 10 9 7 34 34 H 1.09001 * 113.28535 * 346.93022 * 15 3 2 35 35 H 1.08996 * 113.46357 * 332.93933 * 16 15 3 36 36 H 1.09003 * 113.46769 * 202.49508 * 16 15 3 37 37 H 0.96999 * 120.00222 * 5.12150 * 21 20 18 38 38 H 1.08997 * 113.46669 * 87.44052 * 26 17 16 39 39 H 1.09009 * 113.46577 * 217.87154 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0166 -1.1671 5 8 2.6478 3.1630 -1.1671 6 6 1.9966 1.3212 -2.4450 7 6 0.7372 1.3884 -3.0510 8 9 -0.2581 2.0914 -2.4676 9 6 0.5153 0.7383 -4.2498 10 6 1.5308 0.0133 -4.8470 11 6 2.7789 -0.0631 -4.2527 12 9 3.7646 -0.7732 -4.8438 13 6 3.0190 0.5865 -3.0540 14 9 4.2373 0.5120 -2.4748 15 6 2.2624 2.0718 1.2687 16 6 3.7125 2.5359 1.4639 17 7 3.3527 3.7812 0.7691 18 6 4.0123 4.7176 0.0186 19 1 5.0310 4.5400 -0.2927 20 6 3.3715 5.8949 -0.3421 21 7 4.0392 6.8440 -0.9632 22 14 1.5614 6.1323 0.0540 23 1 1.1487 7.5082 -0.3224 24 1 0.7542 5.1471 -0.7095 25 1 1.3424 5.9304 1.5088 26 6 1.9740 3.5818 1.2407 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 -0.4555 0.7928 -4.7200 33 1 1.3491 -0.4962 -5.7818 34 1 1.8393 1.5541 2.1295 35 1 4.4387 1.9306 0.9214 36 1 3.9837 2.6848 2.5091 37 1 4.9579 6.6923 -1.2351 38 1 1.7869 4.0063 2.2270 39 1 1.2190 3.8675 0.5082 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000951581157.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:07 Heat of formation + Delta-G solvation = -23.713850 kcal Electronic energy + Delta-G solvation = -30145.169334 eV Core-core repulsion = 25643.190896 eV Total energy + Delta-G solvation = -4501.978438 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -49.66765 -49.18857 -48.73000 -40.36609 -38.73641 -36.72966 -35.35797 -32.10182 -31.40808 -30.23746 -30.04683 -27.55323 -25.25660 -24.98922 -23.17963 -23.05441 -22.72463 -20.42196 -18.90326 -18.29522 -18.06682 -17.47036 -17.24939 -16.82976 -16.52407 -16.02374 -15.92996 -15.50981 -15.09393 -14.73788 -14.67906 -14.56802 -14.48333 -14.26731 -13.76446 -13.54147 -13.32160 -13.24478 -12.95139 -12.56269 -12.26741 -12.02585 -11.99637 -11.73208 -11.53562 -11.22795 -11.05912 -10.85306 -10.36941 -10.18282 -9.50144 -9.24988 -9.16196 -8.90064 -8.77661 -8.42447 -8.06640 -6.67133 -5.99004 -2.83637 0.41358 0.49181 2.78244 2.91629 3.10950 3.43839 3.57922 3.67693 3.77132 3.85059 4.12534 4.16025 4.45281 4.53178 4.86852 4.87917 4.92993 5.04391 5.18866 5.27043 5.32381 5.37633 5.46667 5.50484 5.60677 5.62428 5.67248 5.73906 5.86325 6.07842 6.13569 6.30266 6.33026 6.36721 6.49348 6.58725 7.17138 7.39209 7.72567 8.52136 8.74498 9.28907 9.84581 10.67921 11.55284 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.013647 B = 0.005780 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.185912 B = 4843.232712 C = 5086.340853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.110 3.890 3 N -0.591 5.591 4 C 0.518 3.482 5 O -0.389 6.389 6 C -0.148 4.148 7 C 0.148 3.852 8 F -0.114 7.114 9 C -0.136 4.136 10 C -0.091 4.091 11 C 0.056 3.944 12 F -0.123 7.123 13 C 0.125 3.875 14 F -0.108 7.108 15 C 0.102 3.898 16 C 0.106 3.894 17 N -0.601 5.601 18 C -0.247 4.247 19 H 0.073 0.927 20 C -0.025 4.025 21 N -0.951 5.951 22 Si 1.076 2.924 23 H -0.304 1.304 24 H -0.295 1.295 25 H -0.294 1.294 26 C 0.091 3.909 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.158 0.842 33 H 0.159 0.841 34 H 0.095 0.905 35 H 0.041 0.959 36 H 0.045 0.955 37 H 0.254 0.746 38 H 0.050 0.950 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.090 -20.940 -3.598 23.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.013 4.013 3 N -0.327 5.327 4 C 0.299 3.701 5 O -0.253 6.253 6 C -0.154 4.154 7 C 0.128 3.872 8 F -0.092 7.092 9 C -0.155 4.155 10 C -0.110 4.110 11 C 0.035 3.965 12 F -0.102 7.102 13 C 0.103 3.897 14 F -0.086 7.086 15 C -0.003 4.003 16 C -0.022 4.022 17 N -0.329 5.329 18 C -0.373 4.373 19 H 0.090 0.910 20 C -0.221 4.221 21 N -0.597 5.597 22 Si 0.911 3.089 23 H -0.232 1.232 24 H -0.223 1.223 25 H -0.222 1.222 26 C -0.035 4.035 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.175 0.825 33 H 0.176 0.824 34 H 0.113 0.887 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.889 -18.973 -3.810 22.206 hybrid contribution 1.510 -1.330 0.063 2.013 sum -9.379 -20.303 -3.746 22.677 Atomic orbital electron populations 1.22304 0.96031 1.01871 1.03117 1.21452 0.94328 0.82890 1.02655 1.47363 1.67274 1.13269 1.04798 1.17978 0.81489 0.88189 0.82450 1.91535 1.35948 1.13507 1.84335 1.20332 0.92840 1.01570 1.00611 1.17308 0.83880 0.93640 0.92386 1.91590 1.58416 1.75774 1.83438 1.20980 1.01439 0.98854 0.94223 1.20927 0.89929 0.99268 1.00878 1.17478 0.87600 0.98696 0.92689 1.91555 1.60114 1.75707 1.82781 1.17286 0.81681 0.98703 0.91994 1.91616 1.39443 1.94203 1.83386 1.22757 0.98880 0.94293 0.84329 1.22785 0.94071 0.89280 0.96087 1.45698 1.03933 1.26703 1.56547 1.19797 0.96594 0.95288 1.25670 0.90966 1.25433 1.05341 0.91332 1.00017 1.70924 1.12063 1.32113 1.44579 0.83613 0.76330 0.73798 0.75135 1.23232 1.22340 1.22199 1.23036 0.91345 0.91165 0.97998 0.92396 0.91777 0.91856 0.91477 0.90117 0.82481 0.82368 0.88679 0.94047 0.93788 0.93567 0.93276 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 10.24 37.16 0.38 -1.40 16 2 C 0.11 1.29 5.96 -4.04 -0.02 1.27 16 3 N -0.59 -9.93 2.74 -166.95 -0.46 -10.39 16 4 C 0.52 10.45 5.96 -12.46 -0.07 10.38 16 5 O -0.39 -10.14 9.75 5.30 0.05 -10.09 16 6 C -0.15 -2.42 3.93 -104.87 -0.41 -2.84 16 7 C 0.15 2.04 6.41 -38.98 -0.25 1.79 16 8 F -0.11 -1.75 15.41 2.25 0.03 -1.72 16 9 C -0.14 -1.28 10.01 -39.57 -0.40 -1.68 16 10 C -0.09 -0.80 10.01 -39.47 -0.40 -1.20 16 11 C 0.06 0.68 7.29 -39.43 -0.29 0.39 16 12 F -0.12 -1.53 17.18 2.25 0.04 -1.50 16 13 C 0.12 1.90 6.86 -38.90 -0.27 1.64 16 14 F -0.11 -1.90 16.74 2.25 0.04 -1.86 16 15 C 0.10 1.79 4.87 -67.68 -0.33 1.46 16 16 C 0.11 2.17 8.24 -8.50 -0.07 2.10 16 17 N -0.60 -15.59 2.07 -184.62 -0.38 -15.98 16 18 C -0.25 -7.63 8.81 -15.06 -0.13 -7.76 16 19 H 0.07 2.40 8.05 -52.49 -0.42 1.98 16 20 C -0.02 -0.80 5.35 -17.43 -0.09 -0.90 16 21 N -0.95 -32.42 13.70 55.49 0.76 -31.66 16 22 Si 1.08 29.86 24.40 -169.99 -4.15 25.71 16 23 H -0.30 -8.57 7.11 56.52 0.40 -8.17 16 24 H -0.29 -8.00 6.48 56.52 0.37 -7.64 16 25 H -0.29 -7.53 6.20 56.52 0.35 -7.18 16 26 C 0.09 2.03 4.67 -8.37 -0.04 1.99 16 27 H 0.06 0.67 5.60 -51.93 -0.29 0.38 16 28 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.76 6.54 -51.93 -0.34 0.42 16 31 H 0.08 0.77 8.07 -51.93 -0.42 0.36 16 32 H 0.16 0.97 8.06 -52.48 -0.42 0.54 16 33 H 0.16 0.83 8.06 -52.48 -0.42 0.41 16 34 H 0.10 1.26 8.10 -51.93 -0.42 0.84 16 35 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.25 8.62 8.73 -40.82 -0.36 8.26 16 38 H 0.05 1.05 7.61 -51.93 -0.40 0.65 16 39 H 0.06 1.39 4.10 -51.92 -0.21 1.17 16 LS Contribution 325.88 15.07 4.91 4.91 Total: -1.00 -38.32 325.88 -5.82 -44.14 By element: Atomic # 1 Polarization: -2.54 SS G_CDS: -4.28 Total: -6.81 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: -2.39 Total: 5.24 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: -0.08 Total: -58.02 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.05 Total: -10.09 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 0.11 Total: -5.08 kcal Atomic # 14 Polarization: 29.86 SS G_CDS: -4.15 Total: 25.71 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -38.32 -5.82 -44.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951581157.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.430 kcal (2) G-P(sol) polarization free energy of solvation -38.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds