Wall clock time and date at job start Tue Mar 31 2020 16:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47042 * 2 1 4 4 C 1.34774 * 120.00236 * 269.99657 * 3 2 1 5 5 O 1.21579 * 120.00140 * 179.97438 * 4 3 2 6 6 C 1.47550 * 119.99923 * 0.02562 * 4 3 2 7 7 C 1.39920 * 120.18086 * 89.71484 * 6 4 3 8 8 F 1.35099 * 120.07393 * 0.02562 * 7 6 4 9 9 C 1.38169 * 119.85262 * 179.78871 * 7 6 4 10 10 C 1.38334 * 120.21413 * 0.49356 * 9 7 6 11 11 C 1.38446 * 120.35832 * 359.74019 * 10 9 7 12 12 F 1.35099 * 119.92787 * 180.02562 * 11 10 9 13 13 C 1.38441 * 120.14317 * 0.02562 * 11 10 9 14 14 F 1.35097 * 120.11176 * 180.02562 * 13 11 10 15 15 C 1.46498 * 119.99874 * 90.00079 * 3 2 1 16 16 C 1.53499 * 114.20953 * 119.99844 * 15 3 2 17 17 N 1.47070 * 87.98335 * 87.71511 * 16 15 3 18 18 C 1.36937 * 136.05998 * 207.08074 * 17 16 15 19 19 H 1.07995 * 119.99527 * 8.82897 * 18 17 16 20 20 C 1.38808 * 120.00327 * 188.82578 * 18 17 16 21 21 N 1.31615 * 120.00040 * 174.13722 * 20 18 17 22 22 Si 1.86806 * 119.99735 * 354.13369 * 20 18 17 23 23 H 1.48503 * 109.46864 * 174.98957 * 22 20 18 24 24 H 1.48504 * 109.47248 * 294.98430 * 22 20 18 25 25 H 1.48496 * 109.47264 * 54.98717 * 22 20 18 26 26 C 1.47070 * 87.88237 * 27.34408 * 17 16 15 27 27 H 1.09000 * 109.47454 * 60.00106 * 1 2 3 28 28 H 1.09008 * 109.47068 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47620 * 299.99772 * 1 2 3 30 30 H 1.09004 * 109.47352 * 240.00208 * 2 1 3 31 31 H 1.09006 * 109.47075 * 120.00075 * 2 1 3 32 32 H 1.08007 * 119.89550 * 180.23298 * 9 7 6 33 33 H 1.08004 * 119.82601 * 179.71852 * 10 9 7 34 34 H 1.09001 * 113.28535 * 346.93022 * 15 3 2 35 35 H 1.08996 * 113.46357 * 332.93933 * 16 15 3 36 36 H 1.09003 * 113.46769 * 202.49508 * 16 15 3 37 37 H 0.96999 * 120.00222 * 5.12150 * 21 20 18 38 38 H 1.08997 * 113.46669 * 87.44052 * 26 17 16 39 39 H 1.09009 * 113.46577 * 217.87154 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0166 -1.1671 5 8 2.6478 3.1630 -1.1671 6 6 1.9966 1.3212 -2.4450 7 6 0.7372 1.3884 -3.0510 8 9 -0.2581 2.0914 -2.4676 9 6 0.5153 0.7383 -4.2498 10 6 1.5308 0.0133 -4.8470 11 6 2.7789 -0.0631 -4.2527 12 9 3.7646 -0.7732 -4.8438 13 6 3.0190 0.5865 -3.0540 14 9 4.2373 0.5120 -2.4748 15 6 2.2624 2.0718 1.2687 16 6 3.7125 2.5359 1.4639 17 7 3.3527 3.7812 0.7691 18 6 4.0123 4.7176 0.0186 19 1 5.0310 4.5400 -0.2927 20 6 3.3715 5.8949 -0.3421 21 7 4.0392 6.8440 -0.9632 22 14 1.5614 6.1323 0.0540 23 1 1.1487 7.5082 -0.3224 24 1 0.7542 5.1471 -0.7095 25 1 1.3424 5.9304 1.5088 26 6 1.9740 3.5818 1.2407 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 -0.4555 0.7928 -4.7200 33 1 1.3491 -0.4962 -5.7818 34 1 1.8393 1.5541 2.1295 35 1 4.4387 1.9306 0.9214 36 1 3.9837 2.6848 2.5091 37 1 4.9579 6.6923 -1.2351 38 1 1.7869 4.0063 2.2270 39 1 1.2190 3.8675 0.5082 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000951581157.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:06 Heat of formation + Delta-G solvation = -51.337597 kcal Electronic energy + Delta-G solvation = -30146.367189 eV Core-core repulsion = 25643.190896 eV Total energy + Delta-G solvation = -4503.176293 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.77276 -50.27559 -49.82979 -41.84188 -39.87253 -38.29947 -36.70024 -34.36408 -32.46886 -31.29093 -31.21364 -29.43794 -26.98633 -26.26084 -24.46076 -24.13213 -24.01585 -22.10557 -20.35056 -19.51243 -19.31526 -19.12336 -18.66741 -17.98347 -17.73305 -17.31054 -17.11319 -16.78172 -16.40828 -16.19286 -15.99750 -15.92732 -15.67466 -15.58492 -15.50845 -15.14785 -14.71609 -14.48120 -14.20043 -13.73281 -13.53730 -13.17753 -13.10590 -13.00350 -12.94114 -12.67959 -12.62815 -12.34713 -12.13268 -12.01062 -11.29470 -11.12799 -10.94616 -10.61131 -10.25973 -9.88759 -9.58191 -8.77056 -8.48562 -5.20787 -0.56363 -0.48346 1.29622 1.46109 1.52263 1.67968 1.79838 1.94330 2.39391 2.62395 2.77555 3.08081 3.14435 3.18912 3.37990 3.47021 3.58439 3.64947 3.98207 4.15773 4.29181 4.35391 4.42758 4.46187 4.53185 4.59643 4.64358 4.67084 4.68671 4.75562 4.78406 4.85740 4.95405 5.07349 5.32030 5.36092 5.41803 5.78309 6.08570 6.37352 6.84650 7.30998 7.53316 8.45243 9.09646 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.013647 B = 0.005780 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.185912 B = 4843.232712 C = 5086.340853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.104 3.896 3 N -0.589 5.589 4 C 0.513 3.487 5 O -0.471 6.471 6 C -0.174 4.174 7 C 0.134 3.866 8 F -0.128 7.128 9 C -0.107 4.107 10 C -0.060 4.060 11 C 0.058 3.942 12 F -0.125 7.125 13 C 0.095 3.905 14 F -0.135 7.135 15 C 0.129 3.871 16 C 0.103 3.897 17 N -0.633 5.633 18 C -0.210 4.210 19 H 0.025 0.975 20 C -0.094 4.094 21 N -0.995 5.995 22 Si 1.123 2.877 23 H -0.316 1.316 24 H -0.294 1.294 25 H -0.258 1.258 26 C 0.082 3.918 27 H 0.040 0.960 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.111 0.889 32 H 0.203 0.797 33 H 0.210 0.790 34 H 0.159 0.841 35 H 0.024 0.976 36 H 0.075 0.925 37 H 0.234 0.766 38 H 0.071 0.929 39 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.560 -24.924 -3.419 28.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.018 4.018 3 N -0.323 5.323 4 C 0.297 3.703 5 O -0.341 6.341 6 C -0.179 4.179 7 C 0.113 3.887 8 F -0.106 7.106 9 C -0.125 4.125 10 C -0.078 4.078 11 C 0.038 3.962 12 F -0.104 7.104 13 C 0.074 3.926 14 F -0.113 7.113 15 C 0.025 3.975 16 C -0.024 4.024 17 N -0.361 5.361 18 C -0.338 4.338 19 H 0.042 0.958 20 C -0.282 4.282 21 N -0.645 5.645 22 Si 0.953 3.047 23 H -0.246 1.246 24 H -0.223 1.223 25 H -0.184 1.184 26 C -0.044 4.044 27 H 0.060 0.940 28 H 0.114 0.886 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.129 0.871 32 H 0.220 0.780 33 H 0.227 0.773 34 H 0.176 0.824 35 H 0.043 0.957 36 H 0.092 0.908 37 H 0.043 0.957 38 H 0.088 0.912 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -14.384 -23.093 -3.566 27.439 hybrid contribution 2.622 -0.385 -0.074 2.651 sum -11.762 -23.478 -3.640 26.510 Atomic orbital electron populations 1.22248 0.94303 1.03695 1.02369 1.21826 0.95634 0.79974 1.04318 1.47628 1.65924 1.15014 1.03780 1.18586 0.79774 0.87501 0.84418 1.91461 1.39805 1.16827 1.85980 1.20094 0.94671 1.03362 0.99794 1.17659 0.82745 0.94496 0.93776 1.91554 1.58690 1.76383 1.83988 1.21487 1.03308 0.95978 0.91728 1.21506 0.87527 0.97248 1.01482 1.17690 0.88767 0.98122 0.91630 1.91554 1.60637 1.75646 1.82539 1.17590 0.80713 1.00689 0.93620 1.91537 1.41037 1.94640 1.84124 1.22646 0.95992 0.92386 0.86526 1.23074 0.96097 0.86721 0.96520 1.45684 1.06379 1.27180 1.56846 1.19463 0.94462 0.95791 1.24116 0.95751 1.26638 1.08729 0.91856 1.00939 1.71037 1.11323 1.33915 1.48222 0.83026 0.72037 0.72678 0.76980 1.24571 1.22291 1.18353 1.23260 0.88524 0.94830 0.97738 0.94046 0.88599 0.91718 0.91249 0.87074 0.77965 0.77292 0.82369 0.95739 0.90801 0.95679 0.91184 0.94629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 10.24 71.98 0.74 -2.03 16 2 C 0.10 2.10 5.96 86.38 0.52 2.61 16 3 N -0.59 -18.88 2.74 -800.37 -2.20 -21.08 16 4 C 0.51 21.10 5.96 86.70 0.52 21.62 16 5 O -0.47 -25.73 9.75 -3.96 -0.04 -25.76 16 6 C -0.17 -5.69 3.93 -20.02 -0.08 -5.76 16 7 C 0.13 3.43 6.41 22.66 0.15 3.57 16 8 F -0.13 -3.78 15.41 44.97 0.69 -3.08 16 9 C -0.11 -1.53 10.01 22.28 0.22 -1.30 16 10 C -0.06 -0.76 10.01 22.34 0.22 -0.53 16 11 C 0.06 1.29 7.29 22.37 0.16 1.45 16 12 F -0.13 -2.89 17.18 44.97 0.77 -2.11 16 13 C 0.09 2.90 6.86 22.71 0.16 3.06 16 14 F -0.13 -5.00 16.74 44.97 0.75 -4.24 16 15 C 0.13 4.16 4.87 45.55 0.22 4.38 16 16 C 0.10 4.10 8.24 83.18 0.69 4.79 16 17 N -0.63 -33.42 2.07 -738.00 -1.53 -34.95 16 18 C -0.21 -13.73 8.81 84.03 0.74 -12.99 16 19 H 0.02 1.78 8.05 -2.91 -0.02 1.75 16 20 C -0.09 -6.31 5.35 84.86 0.45 -5.86 16 21 N -0.99 -72.26 13.70 21.65 0.30 -71.96 16 22 Si 1.12 62.84 24.40 68.60 1.67 64.51 16 23 H -0.32 -18.04 7.11 99.48 0.71 -17.33 16 24 H -0.29 -16.20 6.48 99.48 0.65 -15.56 16 25 H -0.26 -12.64 6.20 99.48 0.62 -12.02 16 26 C 0.08 3.53 4.67 83.26 0.39 3.91 16 27 H 0.04 0.84 5.60 -2.39 -0.01 0.82 16 28 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 1.41 6.54 -2.38 -0.02 1.39 16 31 H 0.11 1.60 8.07 -2.38 -0.02 1.58 16 32 H 0.20 1.15 8.06 -2.91 -0.02 1.13 16 33 H 0.21 0.66 8.06 -2.91 -0.02 0.63 16 34 H 0.16 3.22 8.10 -2.39 -0.02 3.20 16 35 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.23 17.23 8.73 -92.71 -0.81 16.42 16 38 H 0.07 2.74 7.61 -2.39 -0.02 2.72 16 39 H 0.04 1.71 4.10 -2.38 -0.01 1.70 16 Total: -1.00 -96.18 325.88 6.43 -89.75 By element: Atomic # 1 Polarization: -8.89 SS G_CDS: 0.92 Total: -7.98 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: 5.09 Total: 16.92 kcal Atomic # 7 Polarization: -124.57 SS G_CDS: -3.43 Total: -127.99 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.04 Total: -25.76 kcal Atomic # 9 Polarization: -11.66 SS G_CDS: 2.22 Total: -9.44 kcal Atomic # 14 Polarization: 62.84 SS G_CDS: 1.67 Total: 64.51 kcal Total: -96.18 6.43 -89.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951581157.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.408 kcal (2) G-P(sol) polarization free energy of solvation -96.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds