Wall clock time and date at job start Tue Mar 31 2020 16:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.34777 * 119.99828 * 274.72131 * 4 2 1 6 6 O 1.21603 * 119.99956 * 0.28069 * 5 4 2 7 7 C 1.47425 * 120.00303 * 180.27543 * 5 4 2 8 8 C 1.39981 * 120.16021 * 89.72706 * 7 5 4 9 9 F 1.35106 * 120.08297 * 0.02562 * 8 7 5 10 10 C 1.38103 * 119.83177 * 179.72655 * 8 7 5 11 11 C 1.38599 * 120.16108 * 0.55115 * 10 8 7 12 12 F 1.35098 * 119.83240 * 179.74219 * 11 10 8 13 13 C 1.38593 * 120.33089 * 359.72473 * 11 10 8 14 14 C 1.38097 * 120.16747 * 359.97438 * 13 11 10 15 15 F 1.35104 * 120.08449 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 17 17 C 1.53948 * 113.74184 * 158.73921 * 16 2 1 18 18 N 1.47814 * 86.03646 * 222.08835 * 17 16 2 19 19 C 1.36942 * 134.45240 * 204.64856 * 18 17 16 20 20 H 1.07999 * 119.99660 * 179.86888 * 19 18 17 21 21 C 1.38805 * 120.00102 * 359.85987 * 19 18 17 22 22 N 1.31620 * 120.00271 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99975 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47198 * 90.00188 * 23 21 19 25 25 H 1.48500 * 109.46956 * 210.00247 * 23 21 19 26 26 H 1.48506 * 109.46864 * 329.99823 * 23 21 19 27 27 C 1.47574 * 91.05404 * 24.55000 * 18 17 16 28 28 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 29 29 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 30 30 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 31 31 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 32 32 H 1.07998 * 119.91343 * 180.27480 * 10 8 7 33 33 H 1.08007 * 119.91477 * 180.02562 * 13 11 10 34 34 H 1.08997 * 112.94532 * 290.33278 * 16 2 1 35 35 H 1.09004 * 113.77033 * 336.35087 * 17 16 2 36 36 H 1.08995 * 113.76757 * 107.74819 * 17 16 2 37 37 H 0.97003 * 120.00147 * 180.02562 * 22 21 19 38 38 H 1.09000 * 113.76875 * 221.15946 * 27 18 17 39 39 H 1.09003 * 113.87489 * 89.76973 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1523 -0.0169 2.3557 6 8 1.8631 1.1630 2.4103 7 6 2.6495 -0.7103 3.5580 8 6 4.0224 -0.7538 3.8275 9 9 4.8969 -0.1596 2.9864 10 6 4.4802 -1.4004 4.9587 11 6 3.5849 -2.0150 5.8200 12 9 4.0405 -2.6501 6.9219 13 6 2.2247 -1.9810 5.5566 14 6 1.7515 -1.3329 4.4327 15 9 0.4251 -1.3004 4.1778 16 6 2.0400 -0.7213 -1.2492 17 6 3.4847 -0.3521 -1.6317 18 7 2.9977 -0.3176 -3.0269 19 6 3.5874 -0.4757 -4.2527 20 1 2.9927 -0.4037 -5.1513 21 6 4.9495 -0.7283 -4.3402 22 7 5.6742 -0.8164 -3.2451 23 14 5.7540 -0.9433 -6.0124 24 1 6.2188 0.3759 -6.5113 25 1 6.9137 -1.8626 -5.8892 26 1 4.7689 -1.5141 -6.9659 27 6 1.6213 -0.0472 -2.5685 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 2.2491 -1.6318 1.1526 32 1 5.5388 -1.4310 5.1703 33 1 1.5330 -2.4618 6.2325 34 1 1.8528 -1.7948 -1.2262 35 1 3.8047 0.6191 -1.2540 36 1 4.2070 -1.1447 -1.4367 37 1 6.6262 -0.9926 -3.3063 38 1 0.8586 -0.5970 -3.1199 39 1 1.3907 1.0133 -2.4662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970349448.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:08 Heat of formation + Delta-G solvation = -87.009727 kcal Electronic energy + Delta-G solvation = -27679.411150 eV Core-core repulsion = 23174.687997 eV Total energy + Delta-G solvation = -4504.723153 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.62094 -49.55908 -49.42955 -40.14610 -38.73617 -37.88884 -34.88008 -32.36114 -31.62545 -31.15808 -29.97854 -27.53040 -25.16157 -24.46222 -23.79103 -23.69218 -21.66248 -20.57840 -19.42143 -19.03807 -18.37070 -17.77553 -16.91926 -16.71214 -16.44960 -16.39992 -16.19474 -15.80285 -15.71147 -15.56688 -14.90124 -14.84094 -14.68620 -14.35964 -13.86819 -13.58983 -13.15391 -12.98881 -12.77541 -12.50412 -12.44764 -12.17125 -12.08976 -11.68504 -11.36771 -11.30143 -10.92569 -10.73105 -10.40432 -10.19491 -9.84375 -9.78362 -9.47666 -9.43073 -9.38849 -8.93405 -8.79510 -6.87443 -5.76194 -3.08627 0.09347 0.29208 2.35537 2.51843 2.91706 3.08471 3.39339 3.44025 3.45990 3.61222 3.66913 4.17416 4.21577 4.35663 4.45261 5.01220 5.07886 5.11322 5.16133 5.19786 5.24712 5.26819 5.35819 5.52503 5.62923 5.75512 5.91928 5.99178 6.05753 6.20391 6.32302 6.38307 6.52523 6.62406 6.74328 7.23303 7.35488 7.45262 7.55862 7.98348 8.09111 9.04956 9.71360 10.60282 11.40805 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.016437 B = 0.003073 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.076056 B = 9109.504896 C =10302.961225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.149 3.851 3 H 0.090 0.910 4 N -0.701 5.701 5 C 0.566 3.434 6 O -0.520 6.520 7 C -0.208 4.208 8 C 0.201 3.799 9 F -0.104 7.104 10 C -0.203 4.203 11 C 0.177 3.823 12 F -0.118 7.118 13 C -0.205 4.205 14 C 0.196 3.804 15 F -0.111 7.111 16 C -0.147 4.147 17 C 0.170 3.830 18 N -0.613 5.613 19 C -0.223 4.223 20 H 0.080 0.920 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.131 3.869 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.402 0.598 32 H 0.164 0.836 33 H 0.162 0.838 34 H 0.089 0.911 35 H 0.027 0.973 36 H 0.072 0.928 37 H 0.253 0.747 38 H 0.045 0.955 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.336 -4.517 20.234 21.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.045 3.955 3 H 0.108 0.892 4 N -0.350 5.350 5 C 0.349 3.651 6 O -0.396 6.396 7 C -0.213 4.213 8 C 0.180 3.820 9 F -0.082 7.082 10 C -0.223 4.223 11 C 0.157 3.843 12 F -0.096 7.096 13 C -0.225 4.225 14 C 0.175 3.825 15 F -0.089 7.089 16 C -0.167 4.167 17 C 0.045 3.955 18 N -0.339 5.339 19 C -0.351 4.351 20 H 0.097 0.903 21 C -0.204 4.204 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.005 3.995 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.237 0.763 32 H 0.181 0.819 33 H 0.180 0.820 34 H 0.107 0.893 35 H 0.044 0.956 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.283 -3.720 19.992 21.600 hybrid contribution 0.727 -0.464 -0.845 1.208 sum -6.556 -4.185 19.147 20.666 Atomic orbital electron populations 1.22132 0.95302 1.01963 1.02281 1.21221 0.93741 0.97687 0.82877 0.89156 1.46094 1.65490 1.14126 1.09297 1.17564 0.78391 0.86572 0.82608 1.90842 1.49441 1.14822 1.84464 1.20093 0.92869 1.07568 1.00755 1.16824 0.84869 0.92262 0.88021 1.91686 1.67330 1.80277 1.68861 1.21046 1.02514 1.03550 0.95146 1.16902 0.90886 0.92696 0.83783 1.91591 1.89330 1.78871 1.49845 1.20970 0.95376 1.06351 0.99776 1.16740 0.77686 0.95175 0.92879 1.91618 1.29703 1.94008 1.93576 1.23848 1.01060 0.99713 0.92121 1.22308 0.91286 0.98588 0.83329 1.45993 1.03265 1.82595 1.02007 1.19026 0.91464 1.41663 0.82953 0.90265 1.24780 0.96042 1.02359 0.97258 1.69818 1.06073 1.55157 1.25753 0.86132 0.79012 0.77553 0.83134 1.21622 1.21634 1.20628 1.22481 0.89701 0.96634 0.90722 0.92690 0.91150 0.92561 0.76319 0.81859 0.82039 0.89285 0.95552 0.90985 0.93665 0.93699 0.94716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.31 37.16 0.35 -1.74 16 2 C 0.15 2.29 2.38 -67.93 -0.16 2.13 16 3 H 0.09 1.60 7.41 -51.93 -0.38 1.22 16 4 N -0.70 -9.73 5.07 -54.88 -0.28 -10.01 16 5 C 0.57 8.44 6.50 -12.52 -0.08 8.36 16 6 O -0.52 -9.60 16.77 5.27 0.09 -9.51 16 7 C -0.21 -2.45 5.64 -104.85 -0.59 -3.05 16 8 C 0.20 2.20 7.29 -38.98 -0.28 1.92 16 9 F -0.10 -1.39 16.83 2.25 0.04 -1.35 16 10 C -0.20 -1.65 9.99 -39.50 -0.39 -2.05 16 11 C 0.18 1.34 7.30 -39.32 -0.29 1.05 16 12 F -0.12 -0.89 17.26 2.25 0.04 -0.85 16 13 C -0.21 -1.51 9.98 -39.50 -0.39 -1.90 16 14 C 0.20 1.92 7.29 -38.98 -0.28 1.63 16 15 F -0.11 -1.19 16.83 2.25 0.04 -1.15 16 16 C -0.15 -2.61 3.47 -89.69 -0.31 -2.92 16 17 C 0.17 3.96 7.08 -2.84 -0.02 3.94 16 18 N -0.61 -15.68 3.70 -177.69 -0.66 -16.34 16 19 C -0.22 -6.30 10.70 -15.06 -0.16 -6.46 16 20 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 21 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 22 N -0.92 -27.36 11.39 55.49 0.63 -26.73 16 23 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 C 0.13 2.61 7.64 -2.97 -0.02 2.59 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.89 7.52 -51.93 -0.39 0.50 16 30 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 31 H 0.40 4.73 8.59 -40.82 -0.35 4.38 16 32 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.16 0.80 8.06 -52.48 -0.42 0.38 16 34 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 35 H 0.03 0.65 7.99 -51.93 -0.41 0.24 16 36 H 0.07 1.84 7.16 -51.93 -0.37 1.47 16 37 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.04 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 350.38 15.07 5.28 5.28 Total: -1.00 -33.10 350.38 -7.00 -40.10 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -4.42 Total: 0.21 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -2.74 Total: 3.17 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.30 Total: -53.07 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.11 Total: -3.35 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.10 -7.00 -40.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970349448.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.906 kcal (2) G-P(sol) polarization free energy of solvation -33.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds