Wall clock time and date at job start Tue Mar 31 2020 16:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.34777 * 119.99828 * 274.72131 * 4 2 1 6 6 O 1.21603 * 119.99956 * 0.28069 * 5 4 2 7 7 C 1.47425 * 120.00303 * 180.27543 * 5 4 2 8 8 C 1.39981 * 120.16021 * 89.72706 * 7 5 4 9 9 F 1.35106 * 120.08297 * 0.02562 * 8 7 5 10 10 C 1.38103 * 119.83177 * 179.72655 * 8 7 5 11 11 C 1.38599 * 120.16108 * 0.55115 * 10 8 7 12 12 F 1.35098 * 119.83240 * 179.74219 * 11 10 8 13 13 C 1.38593 * 120.33089 * 359.72473 * 11 10 8 14 14 C 1.38097 * 120.16747 * 359.97438 * 13 11 10 15 15 F 1.35104 * 120.08449 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 17 17 C 1.53948 * 113.74184 * 158.73921 * 16 2 1 18 18 N 1.47814 * 86.03646 * 222.08835 * 17 16 2 19 19 C 1.36942 * 134.45240 * 204.64856 * 18 17 16 20 20 H 1.07999 * 119.99660 * 179.86888 * 19 18 17 21 21 C 1.38805 * 120.00102 * 359.85987 * 19 18 17 22 22 N 1.31620 * 120.00271 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99975 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47198 * 90.00188 * 23 21 19 25 25 H 1.48500 * 109.46956 * 210.00247 * 23 21 19 26 26 H 1.48506 * 109.46864 * 329.99823 * 23 21 19 27 27 C 1.47574 * 91.05404 * 24.55000 * 18 17 16 28 28 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 29 29 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 30 30 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 31 31 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 32 32 H 1.07998 * 119.91343 * 180.27480 * 10 8 7 33 33 H 1.08007 * 119.91477 * 180.02562 * 13 11 10 34 34 H 1.08997 * 112.94532 * 290.33278 * 16 2 1 35 35 H 1.09004 * 113.77033 * 336.35087 * 17 16 2 36 36 H 1.08995 * 113.76757 * 107.74819 * 17 16 2 37 37 H 0.97003 * 120.00147 * 180.02562 * 22 21 19 38 38 H 1.09000 * 113.76875 * 221.15946 * 27 18 17 39 39 H 1.09003 * 113.87489 * 89.76973 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1523 -0.0169 2.3557 6 8 1.8631 1.1630 2.4103 7 6 2.6495 -0.7103 3.5580 8 6 4.0224 -0.7538 3.8275 9 9 4.8969 -0.1596 2.9864 10 6 4.4802 -1.4004 4.9587 11 6 3.5849 -2.0150 5.8200 12 9 4.0405 -2.6501 6.9219 13 6 2.2247 -1.9810 5.5566 14 6 1.7515 -1.3329 4.4327 15 9 0.4251 -1.3004 4.1778 16 6 2.0400 -0.7213 -1.2492 17 6 3.4847 -0.3521 -1.6317 18 7 2.9977 -0.3176 -3.0269 19 6 3.5874 -0.4757 -4.2527 20 1 2.9927 -0.4037 -5.1513 21 6 4.9495 -0.7283 -4.3402 22 7 5.6742 -0.8164 -3.2451 23 14 5.7540 -0.9433 -6.0124 24 1 6.2188 0.3759 -6.5113 25 1 6.9137 -1.8626 -5.8892 26 1 4.7689 -1.5141 -6.9659 27 6 1.6213 -0.0472 -2.5685 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 2.2491 -1.6318 1.1526 32 1 5.5388 -1.4310 5.1703 33 1 1.5330 -2.4618 6.2325 34 1 1.8528 -1.7948 -1.2262 35 1 3.8047 0.6191 -1.2540 36 1 4.2070 -1.1447 -1.4367 37 1 6.6262 -0.9926 -3.3063 38 1 0.8586 -0.5970 -3.1199 39 1 1.3907 1.0133 -2.4662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970349448.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:07 Heat of formation + Delta-G solvation = -108.032223 kcal Electronic energy + Delta-G solvation = -27680.322753 eV Core-core repulsion = 23174.687997 eV Total energy + Delta-G solvation = -4505.634757 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.36520 -50.33844 -50.24032 -41.32068 -39.96498 -39.13564 -36.29857 -34.22687 -32.79263 -31.86779 -31.13938 -29.36212 -26.70977 -25.83154 -25.20348 -24.43745 -23.07802 -21.79138 -20.92600 -19.84140 -19.14771 -18.96621 -18.71663 -17.83990 -17.27780 -17.21782 -17.12984 -16.92540 -16.62067 -16.54772 -16.45440 -15.84103 -15.74347 -15.61286 -15.47231 -14.96194 -14.67658 -14.20676 -13.88009 -13.58979 -13.42885 -13.28679 -13.12493 -13.10021 -12.97367 -12.88758 -12.71936 -12.54053 -12.03116 -11.76977 -11.58014 -11.35452 -11.15591 -10.87306 -10.22040 -10.18736 -10.16981 -8.93045 -7.90802 -5.24812 -0.66773 -0.41409 1.21045 1.44878 1.47152 1.55704 1.76281 1.97208 2.22741 2.46926 2.87741 2.94141 3.25106 3.31049 3.39631 3.48691 3.61701 3.73576 3.89910 4.25724 4.34811 4.38376 4.40441 4.44362 4.45114 4.56493 4.72577 4.73458 4.78760 4.83962 4.98527 5.04539 5.24316 5.30877 5.35497 5.37143 5.53106 5.62869 5.92671 6.30413 6.90970 6.95072 7.60392 8.55812 9.26000 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.016437 B = 0.003073 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.076056 B = 9109.504896 C =10302.961225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.157 3.843 3 H 0.062 0.938 4 N -0.695 5.695 5 C 0.564 3.436 6 O -0.563 6.563 7 C -0.224 4.224 8 C 0.181 3.819 9 F -0.126 7.126 10 C -0.187 4.187 11 C 0.189 3.811 12 F -0.111 7.111 13 C -0.181 4.181 14 C 0.192 3.808 15 F -0.117 7.117 16 C -0.109 4.109 17 C 0.166 3.834 18 N -0.644 5.644 19 C -0.236 4.236 20 H 0.086 0.914 21 C -0.069 4.069 22 N -0.954 5.954 23 Si 0.979 3.021 24 H -0.289 1.289 25 H -0.293 1.293 26 H -0.265 1.265 27 C 0.132 3.868 28 H 0.049 0.951 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.414 0.586 32 H 0.185 0.815 33 H 0.193 0.807 34 H 0.107 0.893 35 H 0.002 0.998 36 H 0.042 0.958 37 H 0.248 0.752 38 H 0.067 0.933 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.695 -6.113 21.275 23.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.052 3.948 3 H 0.081 0.919 4 N -0.345 5.345 5 C 0.349 3.651 6 O -0.442 6.442 7 C -0.229 4.229 8 C 0.160 3.840 9 F -0.104 7.104 10 C -0.206 4.206 11 C 0.169 3.831 12 F -0.090 7.090 13 C -0.200 4.200 14 C 0.171 3.829 15 F -0.095 7.095 16 C -0.129 4.129 17 C 0.041 3.959 18 N -0.371 5.371 19 C -0.364 4.364 20 H 0.103 0.897 21 C -0.261 4.261 22 N -0.603 5.603 23 Si 0.807 3.193 24 H -0.217 1.217 25 H -0.220 1.220 26 H -0.190 1.190 27 C 0.007 3.993 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.250 0.750 32 H 0.202 0.798 33 H 0.211 0.789 34 H 0.125 0.875 35 H 0.020 0.980 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.086 0.914 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.681 -5.341 21.037 23.376 hybrid contribution 1.136 0.030 -1.087 1.573 sum -7.545 -5.311 19.950 21.981 Atomic orbital electron populations 1.22050 0.92755 1.03395 1.02513 1.20981 0.95496 0.95907 0.82443 0.91930 1.46029 1.65074 1.14612 1.08777 1.18005 0.77418 0.86142 0.83506 1.90808 1.51381 1.16724 1.85314 1.19921 0.93697 1.09032 1.00249 1.16995 0.84313 0.93667 0.88981 1.91630 1.67960 1.81033 1.69816 1.21197 1.03803 1.01929 0.93715 1.16836 0.90801 0.92008 0.83504 1.91621 1.89278 1.78606 1.49448 1.21200 0.95760 1.04408 0.98635 1.16762 0.77134 0.95664 0.93300 1.91604 1.30055 1.94134 1.93717 1.23462 0.96292 1.00664 0.92501 1.22184 0.94013 0.96443 0.83272 1.46427 1.05877 1.82852 1.01907 1.19466 0.91996 1.40581 0.84404 0.89664 1.25649 0.96771 1.02898 1.00815 1.70019 1.05825 1.56665 1.27819 0.85071 0.77920 0.77148 0.79148 1.21659 1.21964 1.18976 1.22675 0.87692 0.97578 0.91400 0.93155 0.90257 0.90468 0.74966 0.79805 0.78932 0.87465 0.98035 0.93934 0.94334 0.91445 0.93832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.31 71.98 0.67 -2.99 16 2 C 0.16 4.78 2.38 44.99 0.11 4.89 16 3 H 0.06 2.30 7.41 -2.39 -0.02 2.28 16 4 N -0.70 -19.36 5.07 -445.81 -2.26 -21.62 16 5 C 0.56 17.22 6.50 86.66 0.56 17.78 16 6 O -0.56 -21.61 16.77 -4.04 -0.07 -21.67 16 7 C -0.22 -5.25 5.64 -20.02 -0.11 -5.36 16 8 C 0.18 3.93 7.29 22.66 0.17 4.10 16 9 F -0.13 -3.54 16.83 44.97 0.76 -2.78 16 10 C -0.19 -2.71 9.99 22.32 0.22 -2.48 16 11 C 0.19 2.27 7.30 22.44 0.16 2.44 16 12 F -0.11 -1.29 17.26 44.97 0.78 -0.51 16 13 C -0.18 -2.09 9.98 22.32 0.22 -1.87 16 14 C 0.19 3.44 7.29 22.66 0.17 3.61 16 15 F -0.12 -2.32 16.83 44.97 0.76 -1.57 16 16 C -0.11 -3.81 3.47 -10.13 -0.04 -3.85 16 17 C 0.17 8.02 7.08 86.44 0.61 8.63 16 18 N -0.64 -33.31 3.70 -716.09 -2.65 -35.96 16 19 C -0.24 -13.39 10.70 84.03 0.90 -12.49 16 20 H 0.09 4.58 7.83 -2.91 -0.02 4.56 16 21 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 22 N -0.95 -58.51 11.39 21.65 0.25 -58.26 16 23 Si 0.98 46.13 29.55 68.60 2.03 48.15 16 24 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 25 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 27 C 0.13 5.09 7.64 86.49 0.66 5.75 16 28 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.08 1.82 7.52 -2.39 -0.02 1.80 16 30 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.41 9.54 8.59 -92.71 -0.80 8.74 16 32 H 0.18 1.85 8.06 -2.91 -0.02 1.82 16 33 H 0.19 1.05 8.06 -2.91 -0.02 1.02 16 34 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 35 H 0.00 0.10 7.99 -2.39 -0.02 0.08 16 36 H 0.04 2.28 7.16 -2.39 -0.02 2.26 16 37 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 38 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.04 1.64 8.10 -2.39 -0.02 1.62 16 Total: -1.00 -74.40 350.38 4.67 -69.73 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 0.32 Total: 9.82 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: 4.77 Total: 14.67 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -4.67 Total: -115.84 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.07 Total: -21.67 kcal Atomic # 9 Polarization: -7.14 SS G_CDS: 2.29 Total: -4.85 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.15 kcal Total: -74.40 4.67 -69.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970349448.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.306 kcal (2) G-P(sol) polarization free energy of solvation -74.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds