Wall clock time and date at job start Tue Mar 31 2020 16:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47148 * 2 1 4 4 N 1.46501 * 109.47136 * 119.99930 * 2 1 3 5 5 C 1.34774 * 120.00022 * 274.99616 * 4 2 1 6 6 O 1.21590 * 119.99778 * 0.02562 * 5 4 2 7 7 C 1.47580 * 120.00229 * 179.97438 * 5 4 2 8 8 C 1.39737 * 120.12968 * 0.02562 * 7 5 4 9 9 C 1.37753 * 119.94462 * 179.97438 * 8 7 5 10 10 C 1.38711 * 120.21087 * 0.02562 * 9 8 7 11 11 F 1.35107 * 119.86662 * 179.97438 * 10 9 8 12 12 C 1.38667 * 120.26926 * 359.97438 * 10 9 8 13 13 F 1.35104 * 119.97237 * 180.02562 * 12 10 9 14 14 C 1.38375 * 120.05045 * 359.79050 * 12 10 9 15 15 F 1.35102 * 120.10706 * 180.23254 * 14 12 10 16 16 C 1.53004 * 109.46862 * 239.99803 * 2 1 3 17 17 C 1.53499 * 114.20194 * 175.68147 * 16 2 1 18 18 N 1.47073 * 87.98271 * 220.34656 * 17 16 2 19 19 C 1.36942 * 136.05527 * 207.08568 * 18 17 16 20 20 H 1.07994 * 120.00082 * 7.51165 * 19 18 17 21 21 C 1.38805 * 119.99575 * 187.50622 * 19 18 17 22 22 N 1.31620 * 120.00031 * 174.40324 * 21 19 18 23 23 Si 1.86807 * 120.00388 * 354.40343 * 21 19 18 24 24 H 1.48500 * 109.46966 * 174.95506 * 23 21 19 25 25 H 1.48493 * 109.47091 * 294.95681 * 23 21 19 26 26 H 1.48504 * 109.46855 * 54.95714 * 23 21 19 27 27 C 1.47068 * 87.88530 * 27.34485 * 18 17 16 28 28 H 1.09006 * 109.46666 * 304.63623 * 1 2 3 29 29 H 1.08999 * 109.46923 * 64.63286 * 1 2 3 30 30 H 1.08998 * 109.47162 * 184.63897 * 1 2 3 31 31 H 0.97002 * 119.99853 * 95.00141 * 4 2 1 32 32 H 1.08006 * 120.03057 * 359.97438 * 8 7 5 33 33 H 1.08001 * 119.89262 * 180.02562 * 9 8 7 34 34 H 1.08999 * 113.41397 * 308.87998 * 16 2 1 35 35 H 1.08997 * 113.46896 * 105.57052 * 17 16 2 36 36 H 1.09003 * 113.52350 * 335.12944 * 17 16 2 37 37 H 0.97005 * 119.99470 * 355.00821 * 22 21 19 38 38 H 1.08994 * 113.47031 * 87.43931 * 27 18 17 39 39 H 1.09002 * 113.46631 * 217.88470 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8576 1.1614 2.4117 7 6 2.6385 -0.7140 3.5623 8 6 2.9716 -2.0698 3.5027 9 6 3.4304 -2.7153 4.6298 10 6 3.5626 -2.0239 5.8250 11 9 4.0128 -2.6641 6.9263 12 6 3.2347 -0.6784 5.8941 13 9 3.3663 -0.0107 7.0612 14 6 2.7774 -0.0179 4.7674 15 9 2.4620 1.2942 4.8323 16 6 2.0399 -0.7213 -1.2493 17 6 3.5660 -0.6940 -1.4128 18 7 3.3557 -0.4731 -2.8516 19 6 4.0528 -0.7332 -4.0013 20 1 4.9534 -1.3279 -3.9639 21 6 3.6017 -0.2323 -5.2147 22 7 4.3275 -0.3877 -6.3015 23 14 1.9643 0.6624 -5.3052 24 1 1.7699 1.2015 -6.6751 25 1 0.8651 -0.2833 -4.9848 26 1 1.9563 1.7802 -4.3275 27 6 2.0705 0.1558 -2.5118 28 1 -0.3633 0.5841 0.8456 29 1 -0.3633 0.4403 -0.9286 30 1 -0.3633 -1.0243 0.0831 31 1 2.2491 -1.6318 1.1526 32 1 2.8694 -2.6112 2.5737 33 1 3.6880 -3.7631 4.5826 34 1 1.5924 -1.7045 -1.3948 35 1 4.0440 -1.6468 -1.1853 36 1 4.0424 0.1473 -0.9096 37 1 5.2095 -0.7874 -6.2427 38 1 2.1518 1.2215 -2.2980 39 1 1.2744 -0.0730 -3.2203 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970352053.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:25 Heat of formation + Delta-G solvation = -75.642076 kcal Electronic energy + Delta-G solvation = -27441.882958 eV Core-core repulsion = 22937.652744 eV Total energy + Delta-G solvation = -4504.230214 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.22713 -49.61885 -48.87048 -40.56260 -39.12462 -38.23715 -35.22817 -32.61693 -31.91812 -31.21021 -30.16487 -27.88170 -25.49505 -24.95527 -23.92195 -23.61675 -21.50272 -20.75845 -19.74259 -18.98998 -18.48378 -18.21559 -17.55207 -17.27819 -16.97469 -16.45589 -16.12215 -15.94266 -15.40888 -15.36384 -15.10167 -15.03321 -14.84351 -14.65374 -14.08303 -13.78882 -13.65089 -13.35284 -13.07836 -12.68968 -12.54024 -12.42920 -12.29004 -12.05486 -11.86461 -11.34954 -11.14911 -10.79929 -10.40201 -10.24262 -10.21768 -9.57585 -9.53382 -9.28684 -9.21171 -9.08808 -8.94809 -7.21619 -6.33651 -3.28267 -0.21942 0.14352 2.09683 2.59315 2.88686 3.02033 3.37090 3.41890 3.55735 3.62155 3.65297 3.80655 3.95997 4.11852 4.56318 4.60234 4.75953 4.87006 4.93230 5.02939 5.09713 5.15393 5.23567 5.31117 5.41504 5.46325 5.66719 5.77947 5.92053 5.96675 6.07297 6.16548 6.18879 6.23204 6.29336 6.41035 6.83334 7.06089 7.25170 7.93340 8.19207 8.92944 9.45452 10.31221 11.16194 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.023909 B = 0.002643 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.824386 B =10592.006584 C =11165.340105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.152 3.848 3 H 0.093 0.907 4 N -0.709 5.709 5 C 0.558 3.442 6 O -0.518 6.518 7 C -0.152 4.152 8 C -0.036 4.036 9 C -0.142 4.142 10 C 0.122 3.878 11 F -0.114 7.114 12 C 0.022 3.978 13 F -0.113 7.113 14 C 0.158 3.842 15 F -0.092 7.092 16 C -0.142 4.142 17 C 0.129 3.871 18 N -0.628 5.628 19 C -0.306 4.306 20 H 0.083 0.917 21 C -0.025 4.025 22 N -0.933 5.933 23 Si 1.069 2.931 24 H -0.294 1.294 25 H -0.292 1.292 26 H -0.286 1.286 27 C 0.109 3.891 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.399 0.601 32 H 0.158 0.842 33 H 0.162 0.838 34 H 0.100 0.900 35 H 0.043 0.957 36 H 0.037 0.963 37 H 0.261 0.739 38 H 0.047 0.953 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.654 -6.229 25.135 26.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.048 3.952 3 H 0.111 0.889 4 N -0.360 5.360 5 C 0.343 3.657 6 O -0.394 6.394 7 C -0.157 4.157 8 C -0.055 4.055 9 C -0.161 4.161 10 C 0.101 3.899 11 F -0.093 7.093 12 C 0.000 4.000 13 F -0.092 7.092 14 C 0.136 3.864 15 F -0.070 7.070 16 C -0.162 4.162 17 C 0.002 3.998 18 N -0.356 5.356 19 C -0.432 4.432 20 H 0.100 0.900 21 C -0.224 4.224 22 N -0.575 5.575 23 Si 0.902 3.098 24 H -0.222 1.222 25 H -0.220 1.220 26 H -0.213 1.213 27 C -0.017 4.017 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.235 0.765 32 H 0.175 0.825 33 H 0.180 0.820 34 H 0.119 0.881 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.762 -4.641 23.936 25.302 hybrid contribution 1.435 -0.922 1.608 2.344 sum -5.327 -5.563 25.544 26.680 Atomic orbital electron populations 1.22145 0.94939 1.02116 1.02721 1.21106 0.94116 0.97585 0.82417 0.88867 1.45947 1.66641 1.14054 1.09345 1.17684 0.78692 0.86604 0.82712 1.90885 1.49180 1.14831 1.84547 1.20134 1.06783 0.95051 0.93692 1.21203 0.93291 0.91889 0.99109 1.21112 1.02598 1.02216 0.90129 1.17600 0.99036 0.88374 0.84848 1.91598 1.85924 1.80858 1.50885 1.17442 1.09345 0.90202 0.82965 1.91592 1.93843 1.79726 1.44012 1.17320 0.97616 0.79674 0.91773 1.91680 1.89033 1.29827 1.96466 1.23620 0.98569 1.00470 0.93589 1.22313 0.92400 0.98527 0.86540 1.45967 1.19309 1.69231 1.01071 1.20149 1.08562 1.30972 0.83529 0.89966 1.25747 1.05687 0.99757 0.91169 1.70922 1.12023 1.46185 1.28374 0.83732 0.75038 0.76201 0.74878 1.22176 1.21995 1.21266 1.22740 0.90494 0.95754 0.92744 0.92304 0.91024 0.92392 0.76533 0.82469 0.82015 0.88142 0.93859 0.94529 0.92921 0.93509 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.48 37.16 0.35 -1.45 16 2 C 0.15 1.91 2.35 -67.93 -0.16 1.75 16 3 H 0.09 1.38 7.41 -51.93 -0.38 1.00 16 4 N -0.71 -7.17 4.89 -54.83 -0.27 -7.44 16 5 C 0.56 6.62 7.73 -12.45 -0.10 6.52 16 6 O -0.52 -8.29 15.00 5.29 0.08 -8.21 16 7 C -0.15 -1.39 5.88 -104.92 -0.62 -2.01 16 8 C -0.04 -0.19 9.53 -39.20 -0.37 -0.57 16 9 C -0.14 -0.69 10.00 -39.58 -0.40 -1.09 16 10 C 0.12 0.91 7.31 -39.25 -0.29 0.62 16 11 F -0.11 -0.93 17.17 2.25 0.04 -0.89 16 12 C 0.02 0.21 7.30 -39.37 -0.29 -0.08 16 13 F -0.11 -1.22 17.09 2.25 0.04 -1.18 16 14 C 0.16 1.68 7.29 -38.92 -0.28 1.39 16 15 F -0.09 -1.23 15.46 2.25 0.03 -1.20 16 16 C -0.14 -2.12 3.52 -89.96 -0.32 -2.44 16 17 C 0.13 2.32 8.12 -8.49 -0.07 2.25 16 18 N -0.63 -14.86 3.69 -184.56 -0.68 -15.54 16 19 C -0.31 -8.67 11.08 -15.06 -0.17 -8.83 16 20 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 21 C -0.02 -0.73 5.50 -17.43 -0.10 -0.82 16 22 N -0.93 -29.23 13.70 55.49 0.76 -28.47 16 23 Si 1.07 26.28 25.16 -169.99 -4.28 22.00 16 24 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 25 H -0.29 -6.67 6.51 56.52 0.37 -6.30 16 26 H -0.29 -6.56 6.21 56.52 0.35 -6.21 16 27 C 0.11 2.15 5.27 -8.36 -0.04 2.11 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.40 2.78 6.63 -40.82 -0.27 2.51 16 32 H 0.16 0.39 6.40 -52.48 -0.34 0.05 16 33 H 0.16 0.33 8.06 -52.49 -0.42 -0.09 16 34 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.04 0.67 8.11 -51.93 -0.42 0.25 16 37 H 0.26 8.06 8.73 -40.82 -0.36 7.70 16 38 H 0.05 0.93 7.50 -51.93 -0.39 0.54 16 39 H 0.06 1.13 4.72 -51.93 -0.25 0.88 16 LS Contribution 338.66 15.07 5.10 5.10 Total: -1.00 -34.82 338.66 -6.25 -41.08 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -4.24 Total: -2.60 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -2.84 Total: -2.65 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.19 Total: -51.45 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.08 Total: -8.21 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.11 Total: -3.27 kcal Atomic # 14 Polarization: 26.28 SS G_CDS: -4.28 Total: 22.00 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.82 -6.25 -41.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970352053.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.565 kcal (2) G-P(sol) polarization free energy of solvation -34.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds