Wall clock time and date at job start Tue Mar 31 2020 16:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47148 * 2 1 4 4 N 1.46501 * 109.47136 * 119.99930 * 2 1 3 5 5 C 1.34774 * 120.00022 * 274.99616 * 4 2 1 6 6 O 1.21590 * 119.99778 * 0.02562 * 5 4 2 7 7 C 1.47580 * 120.00229 * 179.97438 * 5 4 2 8 8 C 1.39737 * 120.12968 * 0.02562 * 7 5 4 9 9 C 1.37753 * 119.94462 * 179.97438 * 8 7 5 10 10 C 1.38711 * 120.21087 * 0.02562 * 9 8 7 11 11 F 1.35107 * 119.86662 * 179.97438 * 10 9 8 12 12 C 1.38667 * 120.26926 * 359.97438 * 10 9 8 13 13 F 1.35104 * 119.97237 * 180.02562 * 12 10 9 14 14 C 1.38375 * 120.05045 * 359.79050 * 12 10 9 15 15 F 1.35102 * 120.10706 * 180.23254 * 14 12 10 16 16 C 1.53004 * 109.46862 * 239.99803 * 2 1 3 17 17 C 1.53499 * 114.20194 * 175.68147 * 16 2 1 18 18 N 1.47073 * 87.98271 * 220.34656 * 17 16 2 19 19 C 1.36942 * 136.05527 * 207.08568 * 18 17 16 20 20 H 1.07994 * 120.00082 * 7.51165 * 19 18 17 21 21 C 1.38805 * 119.99575 * 187.50622 * 19 18 17 22 22 N 1.31620 * 120.00031 * 174.40324 * 21 19 18 23 23 Si 1.86807 * 120.00388 * 354.40343 * 21 19 18 24 24 H 1.48500 * 109.46966 * 174.95506 * 23 21 19 25 25 H 1.48493 * 109.47091 * 294.95681 * 23 21 19 26 26 H 1.48504 * 109.46855 * 54.95714 * 23 21 19 27 27 C 1.47068 * 87.88530 * 27.34485 * 18 17 16 28 28 H 1.09006 * 109.46666 * 304.63623 * 1 2 3 29 29 H 1.08999 * 109.46923 * 64.63286 * 1 2 3 30 30 H 1.08998 * 109.47162 * 184.63897 * 1 2 3 31 31 H 0.97002 * 119.99853 * 95.00141 * 4 2 1 32 32 H 1.08006 * 120.03057 * 359.97438 * 8 7 5 33 33 H 1.08001 * 119.89262 * 180.02562 * 9 8 7 34 34 H 1.08999 * 113.41397 * 308.87998 * 16 2 1 35 35 H 1.08997 * 113.46896 * 105.57052 * 17 16 2 36 36 H 1.09003 * 113.52350 * 335.12944 * 17 16 2 37 37 H 0.97005 * 119.99470 * 355.00821 * 22 21 19 38 38 H 1.08994 * 113.47031 * 87.43931 * 27 18 17 39 39 H 1.09002 * 113.46631 * 217.88470 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8576 1.1614 2.4117 7 6 2.6385 -0.7140 3.5623 8 6 2.9716 -2.0698 3.5027 9 6 3.4304 -2.7153 4.6298 10 6 3.5626 -2.0239 5.8250 11 9 4.0128 -2.6641 6.9263 12 6 3.2347 -0.6784 5.8941 13 9 3.3663 -0.0107 7.0612 14 6 2.7774 -0.0179 4.7674 15 9 2.4620 1.2942 4.8323 16 6 2.0399 -0.7213 -1.2493 17 6 3.5660 -0.6940 -1.4128 18 7 3.3557 -0.4731 -2.8516 19 6 4.0528 -0.7332 -4.0013 20 1 4.9534 -1.3279 -3.9639 21 6 3.6017 -0.2323 -5.2147 22 7 4.3275 -0.3877 -6.3015 23 14 1.9643 0.6624 -5.3052 24 1 1.7699 1.2015 -6.6751 25 1 0.8651 -0.2833 -4.9848 26 1 1.9563 1.7802 -4.3275 27 6 2.0705 0.1558 -2.5118 28 1 -0.3633 0.5841 0.8456 29 1 -0.3633 0.4403 -0.9286 30 1 -0.3633 -1.0243 0.0831 31 1 2.2491 -1.6318 1.1526 32 1 2.8694 -2.6112 2.5737 33 1 3.6880 -3.7631 4.5826 34 1 1.5924 -1.7045 -1.3948 35 1 4.0440 -1.6468 -1.1853 36 1 4.0424 0.1473 -0.9096 37 1 5.2095 -0.7874 -6.2427 38 1 2.1518 1.2215 -2.2980 39 1 1.2744 -0.0730 -3.2203 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970352053.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:24 Heat of formation + Delta-G solvation = -100.132252 kcal Electronic energy + Delta-G solvation = -27442.944932 eV Core-core repulsion = 22937.652744 eV Total energy + Delta-G solvation = -4505.292188 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -50.94170 -50.34495 -49.62790 -41.48591 -40.31296 -39.16191 -36.38420 -34.53393 -32.94472 -31.80250 -31.08306 -29.53786 -26.95161 -25.92516 -25.07022 -24.36253 -22.75648 -21.73963 -21.21719 -19.76275 -19.54552 -19.15790 -18.98688 -17.99392 -17.81500 -17.48542 -17.04826 -16.77216 -16.66829 -16.20375 -16.03482 -15.90600 -15.71601 -15.64861 -15.56005 -15.12342 -14.94770 -14.49048 -14.27322 -13.66429 -13.39616 -13.35694 -13.10610 -13.05771 -13.01753 -12.97383 -12.58550 -12.33406 -12.00850 -11.66138 -11.33293 -11.18141 -11.05296 -10.79567 -10.31735 -10.16181 -10.02077 -9.21188 -8.60116 -5.46643 -0.85050 -0.44973 1.40169 1.41846 1.50970 1.68607 1.80456 2.19489 2.27246 2.56359 2.94604 2.98839 2.99920 3.20600 3.21489 3.33219 3.51414 3.62333 3.86772 4.17492 4.23207 4.31791 4.35875 4.52069 4.61024 4.63030 4.66591 4.69607 4.75020 4.78152 4.82585 4.88867 5.06335 5.22373 5.33264 5.35347 5.42060 5.51846 5.96693 6.44701 6.71082 7.10903 7.34270 8.28851 8.91467 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.023909 B = 0.002643 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.824386 B =10592.006584 C =11165.340105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.160 3.840 3 H 0.068 0.932 4 N -0.693 5.693 5 C 0.558 3.442 6 O -0.567 6.567 7 C -0.160 4.160 8 C -0.013 4.013 9 C -0.115 4.115 10 C 0.124 3.876 11 F -0.118 7.118 12 C 0.005 3.995 13 F -0.129 7.129 14 C 0.131 3.869 15 F -0.120 7.120 16 C -0.101 4.101 17 C 0.126 3.874 18 N -0.662 5.662 19 C -0.290 4.290 20 H 0.052 0.948 21 C -0.088 4.088 22 N -0.973 5.973 23 Si 1.106 2.894 24 H -0.308 1.308 25 H -0.261 1.261 26 H -0.265 1.265 27 C 0.095 3.905 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.419 0.581 32 H 0.198 0.802 33 H 0.205 0.795 34 H 0.127 0.873 35 H 0.061 0.939 36 H 0.036 0.964 37 H 0.246 0.754 38 H 0.046 0.954 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.173 -8.800 26.674 28.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.055 3.945 3 H 0.087 0.913 4 N -0.346 5.346 5 C 0.345 3.655 6 O -0.447 6.447 7 C -0.164 4.164 8 C -0.032 4.032 9 C -0.134 4.134 10 C 0.104 3.896 11 F -0.096 7.096 12 C -0.016 4.016 13 F -0.108 7.108 14 C 0.109 3.891 15 F -0.098 7.098 16 C -0.121 4.121 17 C 0.000 4.000 18 N -0.391 5.391 19 C -0.418 4.418 20 H 0.070 0.930 21 C -0.279 4.279 22 N -0.618 5.618 23 Si 0.932 3.068 24 H -0.237 1.237 25 H -0.187 1.187 26 H -0.191 1.191 27 C -0.030 4.030 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.258 0.742 32 H 0.215 0.785 33 H 0.222 0.778 34 H 0.145 0.855 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.283 -7.267 25.550 27.824 hybrid contribution 2.020 -0.212 1.244 2.382 sum -6.262 -7.479 26.793 28.514 Atomic orbital electron populations 1.22106 0.93356 1.03565 1.02449 1.20822 0.95197 0.96198 0.82254 0.91347 1.45691 1.65989 1.14799 1.08076 1.18017 0.77837 0.86070 0.83558 1.90870 1.51352 1.17151 1.85341 1.20004 1.08084 0.96489 0.91869 1.21638 0.90783 0.89936 1.00800 1.21568 0.99885 1.03666 0.88241 1.17826 0.98606 0.87521 0.85680 1.91597 1.85930 1.80668 1.51407 1.17644 1.10559 0.91161 0.82266 1.91541 1.94120 1.80307 1.44812 1.17639 0.99427 0.78970 0.93038 1.91601 1.89670 1.31826 1.96687 1.23291 0.96029 1.00548 0.92208 1.22528 0.95086 0.99214 0.83130 1.46118 1.21013 1.69894 1.02050 1.20035 1.07269 1.28782 0.85675 0.93024 1.27074 1.08624 1.01081 0.91147 1.71025 1.12034 1.48958 1.29824 0.83320 0.72427 0.76466 0.74615 1.23684 1.18672 1.19050 1.22965 0.88577 0.96448 0.95056 0.93115 0.90988 0.89945 0.74223 0.78486 0.77838 0.85522 0.92027 0.94633 0.94509 0.93594 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.48 71.98 0.68 -2.27 16 2 C 0.16 3.51 2.35 44.99 0.11 3.62 16 3 H 0.07 1.91 7.41 -2.39 -0.02 1.89 16 4 N -0.69 -11.42 4.89 -445.65 -2.18 -13.60 16 5 C 0.56 12.17 7.73 86.71 0.67 12.84 16 6 O -0.57 -18.14 15.00 -4.00 -0.06 -18.20 16 7 C -0.16 -2.57 5.88 -20.06 -0.12 -2.69 16 8 C -0.01 -0.08 9.53 22.52 0.21 0.14 16 9 C -0.12 -0.54 10.00 22.27 0.22 -0.31 16 10 C 0.12 1.51 7.31 22.49 0.16 1.68 16 11 F -0.12 -1.62 17.17 44.97 0.77 -0.85 16 12 C 0.00 0.09 7.30 22.40 0.16 0.25 16 13 F -0.13 -2.88 17.09 44.97 0.77 -2.11 16 14 C 0.13 2.75 7.29 22.70 0.17 2.92 16 15 F -0.12 -3.39 15.46 44.97 0.70 -2.70 16 16 C -0.10 -2.60 3.52 -10.37 -0.04 -2.64 16 17 C 0.13 4.15 8.12 83.18 0.68 4.82 16 18 N -0.66 -30.23 3.69 -737.83 -2.72 -32.95 16 19 C -0.29 -16.51 11.08 84.03 0.93 -15.57 16 20 H 0.05 3.17 8.06 -2.91 -0.02 3.14 16 21 C -0.09 -5.20 5.50 84.86 0.47 -4.73 16 22 N -0.97 -62.76 13.70 21.65 0.30 -62.46 16 23 Si 1.11 52.42 25.16 68.60 1.73 54.14 16 24 H -0.31 -15.22 7.11 99.48 0.71 -14.51 16 25 H -0.26 -10.92 6.51 99.48 0.65 -10.27 16 26 H -0.27 -11.49 6.21 99.48 0.62 -10.87 16 27 C 0.09 3.48 5.27 83.27 0.44 3.92 16 28 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.42 3.47 6.63 -92.71 -0.61 2.85 16 32 H 0.20 -0.45 6.40 -2.91 -0.02 -0.47 16 33 H 0.20 -0.63 8.06 -2.91 -0.02 -0.65 16 34 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.04 1.22 8.11 -2.39 -0.02 1.20 16 37 H 0.25 15.90 8.73 -92.70 -0.81 15.09 16 38 H 0.05 1.72 7.50 -2.39 -0.02 1.70 16 39 H 0.06 2.05 4.72 -2.39 -0.01 2.04 16 Total: -1.00 -81.92 338.66 4.36 -77.56 By element: Atomic # 1 Polarization: -1.12 SS G_CDS: 0.32 Total: -0.80 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 4.75 Total: 1.98 kcal Atomic # 7 Polarization: -104.41 SS G_CDS: -4.61 Total: -109.01 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.06 Total: -18.20 kcal Atomic # 9 Polarization: -7.90 SS G_CDS: 2.24 Total: -5.66 kcal Atomic # 14 Polarization: 52.42 SS G_CDS: 1.73 Total: 54.14 kcal Total: -81.92 4.36 -77.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970352053.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.577 kcal (2) G-P(sol) polarization free energy of solvation -81.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds