Wall clock time and date at job start Tue Mar 31 2020 16:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47515 * 2 1 4 4 N 1.46500 * 109.47087 * 120.00308 * 2 1 3 5 5 C 1.34783 * 119.99869 * 274.99848 * 4 2 1 6 6 O 1.21571 * 119.99809 * 359.97438 * 5 4 2 7 7 C 1.47723 * 120.00014 * 179.97438 * 5 4 2 8 8 C 1.39639 * 120.10208 * 359.72358 * 7 5 4 9 9 C 1.38071 * 119.89876 * 179.79324 * 8 7 5 10 10 F 1.35094 * 119.94957 * 180.25461 * 9 8 7 11 11 C 1.38784 * 120.09960 * 0.47860 * 9 8 7 12 12 F 1.35102 * 119.89910 * 179.72522 * 11 9 8 13 13 C 1.38788 * 120.20297 * 359.75155 * 11 9 8 14 14 F 1.35103 * 119.94803 * 179.97438 * 13 11 9 15 15 C 1.38071 * 120.09992 * 0.02562 * 13 11 9 16 16 C 1.53003 * 109.46711 * 240.00085 * 2 1 3 17 17 C 1.53486 * 114.20850 * 60.00280 * 16 2 1 18 18 N 1.47064 * 87.98715 * 87.51930 * 17 16 2 19 19 C 1.36944 * 136.05968 * 207.08932 * 18 17 16 20 20 H 1.08003 * 119.99220 * 7.55219 * 19 18 17 21 21 C 1.38804 * 120.00270 * 187.55676 * 19 18 17 22 22 N 1.31616 * 120.00491 * 174.37770 * 21 19 18 23 23 Si 1.86810 * 119.99801 * 354.37977 * 21 19 18 24 24 H 1.48499 * 109.46858 * 174.95062 * 23 21 19 25 25 H 1.48498 * 109.46907 * 294.94544 * 23 21 19 26 26 H 1.48495 * 109.47036 * 54.94600 * 23 21 19 27 27 C 1.47066 * 87.88390 * 27.34185 * 18 17 16 28 28 H 1.09000 * 109.46986 * 300.00218 * 1 2 3 29 29 H 1.09004 * 109.47074 * 59.99832 * 1 2 3 30 30 H 1.08994 * 109.47561 * 179.97438 * 1 2 3 31 31 H 0.96997 * 120.00381 * 94.99496 * 4 2 1 32 32 H 1.08005 * 120.04647 * 359.97438 * 8 7 5 33 33 H 1.08002 * 120.04588 * 179.97438 * 15 13 11 34 34 H 1.08998 * 113.41116 * 286.79710 * 16 2 1 35 35 H 1.09003 * 113.46770 * 332.73878 * 17 16 2 36 36 H 1.09004 * 113.52153 * 202.31032 * 17 16 2 37 37 H 0.97003 * 119.99848 * 354.81683 * 22 21 19 38 38 H 1.08996 * 113.46631 * 87.44126 * 27 18 17 39 39 H 1.09001 * 113.46561 * 217.88042 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3572 6 8 1.8584 1.1614 2.4116 7 6 2.6389 -0.7149 3.5635 8 6 2.9656 -2.0712 3.5047 9 6 3.4290 -2.7171 4.6336 10 9 3.7503 -4.0280 4.5766 11 6 3.5609 -2.0227 5.8280 12 9 4.0094 -2.6600 6.9316 13 6 3.2328 -0.6757 5.8923 14 9 3.3627 -0.0048 7.0578 15 6 2.7730 -0.0205 4.7673 16 6 2.0399 -0.7213 -1.2493 17 6 1.5898 -0.0846 -2.5714 18 7 2.7723 0.7864 -2.4946 19 6 3.1105 2.0324 -2.9511 20 1 2.3637 2.6574 -3.4180 21 6 4.4131 2.4918 -2.8140 22 7 4.7655 3.6412 -3.3498 23 14 5.6662 1.4788 -1.8688 24 1 7.0008 2.1220 -1.9706 25 1 5.2629 1.3987 -0.4418 26 1 5.7308 0.1107 -2.4425 27 6 3.4340 -0.2723 -1.7172 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 2.2490 -1.6318 1.1526 32 1 2.8588 -2.6135 2.5768 33 1 2.5176 1.0277 4.8185 34 1 1.9117 -1.8029 -1.2076 35 1 0.6466 0.4562 -2.4938 36 1 1.6122 -0.7736 -3.4158 37 1 4.1374 4.1310 -3.9035 38 1 3.9431 -1.0113 -2.3358 39 1 4.0620 0.1087 -0.9119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970473539.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:34 Heat of formation + Delta-G solvation = -74.721557 kcal Electronic energy + Delta-G solvation = -27671.999969 eV Core-core repulsion = 23167.809672 eV Total energy + Delta-G solvation = -4504.190298 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 3.55 seconds Orbital eigenvalues (eV) -50.22851 -49.62642 -48.90736 -40.61083 -39.17379 -38.09143 -35.08796 -32.55454 -31.79936 -31.11112 -30.03657 -27.87593 -25.66905 -24.85208 -23.91441 -23.52069 -21.67579 -20.80358 -19.61613 -18.67683 -18.40167 -18.03985 -17.47257 -17.24706 -16.85667 -16.66849 -16.03451 -15.91221 -15.41331 -15.38486 -15.20292 -15.08156 -14.83506 -14.72669 -14.00530 -13.69939 -13.41162 -13.22013 -13.17084 -13.05742 -12.53715 -12.26974 -12.13759 -12.04479 -11.54300 -11.34483 -11.04153 -10.68553 -10.38766 -10.32152 -10.07710 -9.54167 -9.48418 -9.28014 -9.15417 -9.05091 -8.89710 -7.18114 -6.29129 -3.23762 -0.17116 0.20647 2.11793 2.68121 2.91776 3.13659 3.37964 3.42406 3.57827 3.62916 3.65281 3.83048 4.07471 4.31861 4.58999 4.69820 4.78720 4.84443 4.90413 4.98872 5.10819 5.23818 5.40787 5.43541 5.51698 5.57969 5.77310 5.82716 5.97742 5.99646 6.13994 6.19135 6.23433 6.31174 6.42261 6.49556 6.81218 7.09857 7.34362 8.01836 8.23958 8.97377 9.49703 10.35060 11.20747 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.015422 B = 0.003262 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.112999 B = 8582.570063 C = 8926.430132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.165 3.835 3 H 0.107 0.893 4 N -0.712 5.712 5 C 0.558 3.442 6 O -0.516 6.516 7 C -0.077 4.077 8 C -0.105 4.105 9 C 0.096 3.904 10 F -0.115 7.115 11 C 0.052 3.948 12 F -0.113 7.113 13 C 0.096 3.904 14 F -0.114 7.114 15 C -0.077 4.077 16 C -0.143 4.143 17 C 0.131 3.869 18 N -0.626 5.626 19 C -0.304 4.304 20 H 0.083 0.917 21 C -0.023 4.023 22 N -0.934 5.934 23 Si 1.068 2.932 24 H -0.295 1.295 25 H -0.293 1.293 26 H -0.288 1.288 27 C 0.099 3.901 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.397 0.603 32 H 0.159 0.841 33 H 0.170 0.830 34 H 0.078 0.922 35 H 0.050 0.950 36 H 0.041 0.959 37 H 0.261 0.739 38 H 0.046 0.954 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.518 -16.171 16.836 24.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.062 3.938 3 H 0.125 0.875 4 N -0.363 5.363 5 C 0.342 3.658 6 O -0.392 6.392 7 C -0.081 4.081 8 C -0.125 4.125 9 C 0.075 3.925 10 F -0.093 7.093 11 C 0.031 3.969 12 F -0.091 7.091 13 C 0.075 3.925 14 F -0.092 7.092 15 C -0.097 4.097 16 C -0.163 4.163 17 C 0.004 3.996 18 N -0.355 5.355 19 C -0.430 4.430 20 H 0.101 0.899 21 C -0.222 4.222 22 N -0.576 5.576 23 Si 0.901 3.099 24 H -0.223 1.223 25 H -0.221 1.221 26 H -0.215 1.215 27 C -0.027 4.027 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.232 0.768 32 H 0.177 0.823 33 H 0.187 0.813 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.075 -15.086 17.383 23.569 hybrid contribution -1.159 -0.895 -0.275 1.490 sum -6.234 -15.981 17.107 24.226 Atomic orbital electron populations 1.22115 0.95000 1.01640 1.02798 1.20759 0.93673 0.98290 0.81113 0.87491 1.46024 1.66635 1.13870 1.09747 1.17778 0.78646 0.86598 0.82731 1.90866 1.49065 1.14759 1.84494 1.19765 1.00862 0.92757 0.94724 1.21328 0.98708 0.94255 0.98163 1.17091 1.03070 0.79555 0.92773 1.91599 1.90212 1.30762 1.96736 1.17801 1.04812 0.90344 0.83950 1.91585 1.86390 1.81221 1.49926 1.17153 1.03573 0.88088 0.83670 1.91604 1.93451 1.79321 1.44826 1.21296 0.96608 1.02601 0.89179 1.23216 0.99626 0.98276 0.95198 1.22353 0.92779 0.91897 0.92571 1.46034 1.13172 1.12592 1.63696 1.20145 0.96417 0.88567 1.37875 0.89915 1.25665 0.96061 0.99144 1.01343 1.70907 1.37614 1.15084 1.34016 0.83745 0.76035 0.74546 0.75566 1.22254 1.22108 1.21522 1.22834 0.93955 0.91334 0.94552 0.92354 0.90892 0.92768 0.76838 0.82303 0.81262 0.90337 0.93171 0.94173 0.92900 0.93629 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.29 37.16 0.35 -1.62 16 2 C 0.16 2.42 2.43 -67.93 -0.16 2.25 16 3 H 0.11 2.11 7.36 -51.93 -0.38 1.72 16 4 N -0.71 -8.30 5.03 -54.78 -0.28 -8.57 16 5 C 0.56 7.25 7.73 -12.38 -0.10 7.15 16 6 O -0.52 -8.86 16.00 5.30 0.08 -8.77 16 7 C -0.08 -0.76 5.87 -104.98 -0.62 -1.37 16 8 C -0.10 -0.79 9.51 -39.12 -0.37 -1.17 16 9 C 0.10 0.81 7.29 -39.44 -0.29 0.53 16 10 F -0.11 -1.03 17.17 2.25 0.04 -0.99 16 11 C 0.05 0.50 7.32 -39.18 -0.29 0.21 16 12 F -0.11 -1.18 17.08 2.25 0.04 -1.14 16 13 C 0.10 0.91 7.29 -39.44 -0.29 0.62 16 14 F -0.11 -1.16 17.17 2.25 0.04 -1.12 16 15 C -0.08 -0.74 9.57 -39.12 -0.37 -1.12 16 16 C -0.14 -2.12 3.73 -89.97 -0.34 -2.45 16 17 C 0.13 2.33 8.08 -8.52 -0.07 2.26 16 18 N -0.63 -14.69 3.49 -184.63 -0.64 -15.34 16 19 C -0.30 -8.63 11.08 -15.06 -0.17 -8.80 16 20 H 0.08 2.48 8.06 -52.48 -0.42 2.06 16 21 C -0.02 -0.69 5.50 -17.43 -0.10 -0.79 16 22 N -0.93 -29.62 13.70 55.49 0.76 -28.86 16 23 Si 1.07 26.83 25.16 -169.99 -4.28 22.55 16 24 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 25 H -0.29 -7.05 6.51 56.52 0.37 -6.68 16 26 H -0.29 -6.65 6.20 56.52 0.35 -6.29 16 27 C 0.10 1.94 5.24 -8.38 -0.04 1.89 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.95 6.50 -51.93 -0.34 0.61 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.40 3.16 6.63 -40.82 -0.27 2.89 16 32 H 0.16 0.77 6.40 -52.48 -0.34 0.43 16 33 H 0.17 1.62 7.65 -52.49 -0.40 1.22 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.86 6.43 -51.93 -0.33 0.53 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.26 8.16 8.73 -40.82 -0.36 7.80 16 38 H 0.05 0.87 7.66 -51.93 -0.40 0.47 16 39 H 0.05 1.11 4.71 -51.93 -0.24 0.86 16 LS Contribution 337.26 15.07 5.08 5.08 Total: -1.00 -33.92 337.26 -6.06 -39.98 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -4.05 Total: -0.40 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -2.85 Total: -2.41 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.16 Total: -52.77 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.08 Total: -8.77 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.12 Total: -3.26 kcal Atomic # 14 Polarization: 26.83 SS G_CDS: -4.28 Total: 22.55 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.92 -6.06 -39.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970473539.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.744 kcal (2) G-P(sol) polarization free energy of solvation -33.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.55 seconds