Wall clock time and date at job start Tue Mar 31 2020 16:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47515 * 2 1 4 4 N 1.46500 * 109.47087 * 120.00308 * 2 1 3 5 5 C 1.34783 * 119.99869 * 274.99848 * 4 2 1 6 6 O 1.21571 * 119.99809 * 359.97438 * 5 4 2 7 7 C 1.47723 * 120.00014 * 179.97438 * 5 4 2 8 8 C 1.39639 * 120.10208 * 359.72358 * 7 5 4 9 9 C 1.38071 * 119.89876 * 179.79324 * 8 7 5 10 10 F 1.35094 * 119.94957 * 180.25461 * 9 8 7 11 11 C 1.38784 * 120.09960 * 0.47860 * 9 8 7 12 12 F 1.35102 * 119.89910 * 179.72522 * 11 9 8 13 13 C 1.38788 * 120.20297 * 359.75155 * 11 9 8 14 14 F 1.35103 * 119.94803 * 179.97438 * 13 11 9 15 15 C 1.38071 * 120.09992 * 0.02562 * 13 11 9 16 16 C 1.53003 * 109.46711 * 240.00085 * 2 1 3 17 17 C 1.53486 * 114.20850 * 60.00280 * 16 2 1 18 18 N 1.47064 * 87.98715 * 87.51930 * 17 16 2 19 19 C 1.36944 * 136.05968 * 207.08932 * 18 17 16 20 20 H 1.08003 * 119.99220 * 7.55219 * 19 18 17 21 21 C 1.38804 * 120.00270 * 187.55676 * 19 18 17 22 22 N 1.31616 * 120.00491 * 174.37770 * 21 19 18 23 23 Si 1.86810 * 119.99801 * 354.37977 * 21 19 18 24 24 H 1.48499 * 109.46858 * 174.95062 * 23 21 19 25 25 H 1.48498 * 109.46907 * 294.94544 * 23 21 19 26 26 H 1.48495 * 109.47036 * 54.94600 * 23 21 19 27 27 C 1.47066 * 87.88390 * 27.34185 * 18 17 16 28 28 H 1.09000 * 109.46986 * 300.00218 * 1 2 3 29 29 H 1.09004 * 109.47074 * 59.99832 * 1 2 3 30 30 H 1.08994 * 109.47561 * 179.97438 * 1 2 3 31 31 H 0.96997 * 120.00381 * 94.99496 * 4 2 1 32 32 H 1.08005 * 120.04647 * 359.97438 * 8 7 5 33 33 H 1.08002 * 120.04588 * 179.97438 * 15 13 11 34 34 H 1.08998 * 113.41116 * 286.79710 * 16 2 1 35 35 H 1.09003 * 113.46770 * 332.73878 * 17 16 2 36 36 H 1.09004 * 113.52153 * 202.31032 * 17 16 2 37 37 H 0.97003 * 119.99848 * 354.81683 * 22 21 19 38 38 H 1.08996 * 113.46631 * 87.44126 * 27 18 17 39 39 H 1.09001 * 113.46561 * 217.88042 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3572 6 8 1.8584 1.1614 2.4116 7 6 2.6389 -0.7149 3.5635 8 6 2.9656 -2.0712 3.5047 9 6 3.4290 -2.7171 4.6336 10 9 3.7503 -4.0280 4.5766 11 6 3.5609 -2.0227 5.8280 12 9 4.0094 -2.6600 6.9316 13 6 3.2328 -0.6757 5.8923 14 9 3.3627 -0.0048 7.0578 15 6 2.7730 -0.0205 4.7673 16 6 2.0399 -0.7213 -1.2493 17 6 1.5898 -0.0846 -2.5714 18 7 2.7723 0.7864 -2.4946 19 6 3.1105 2.0324 -2.9511 20 1 2.3637 2.6574 -3.4180 21 6 4.4131 2.4918 -2.8140 22 7 4.7655 3.6412 -3.3498 23 14 5.6662 1.4788 -1.8688 24 1 7.0008 2.1220 -1.9706 25 1 5.2629 1.3987 -0.4418 26 1 5.7308 0.1107 -2.4425 27 6 3.4340 -0.2723 -1.7172 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 2.2490 -1.6318 1.1526 32 1 2.8588 -2.6135 2.5768 33 1 2.5176 1.0277 4.8185 34 1 1.9117 -1.8029 -1.2076 35 1 0.6466 0.4562 -2.4938 36 1 1.6122 -0.7736 -3.4158 37 1 4.1374 4.1310 -3.9035 38 1 3.9431 -1.0113 -2.3358 39 1 4.0620 0.1087 -0.9119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970473539.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:31 Heat of formation + Delta-G solvation = -98.460207 kcal Electronic energy + Delta-G solvation = -27673.029355 eV Core-core repulsion = 23167.809672 eV Total energy + Delta-G solvation = -4505.219683 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.97643 -50.34677 -49.65575 -41.62211 -40.43217 -39.09043 -36.32139 -34.54727 -32.87636 -31.83628 -31.07869 -29.58081 -27.06938 -25.89555 -25.00290 -24.52774 -23.15139 -21.83333 -20.88892 -19.83778 -19.32944 -19.15504 -18.81607 -17.98465 -17.79293 -17.67632 -17.01323 -16.85464 -16.63265 -16.23782 -16.11942 -16.04998 -15.88290 -15.82154 -15.58727 -15.17976 -14.91696 -14.57562 -13.98632 -13.86492 -13.70409 -13.40415 -13.15937 -13.00760 -12.90317 -12.78642 -12.66279 -12.21012 -12.04166 -11.66301 -11.35092 -11.17761 -11.02870 -10.83853 -10.34007 -10.22339 -10.07568 -9.16596 -8.58700 -5.43209 -0.93113 -0.47538 1.28888 1.34366 1.46503 1.64906 1.79594 2.12758 2.26174 2.55029 2.86303 2.91615 3.06681 3.14572 3.21862 3.25877 3.51664 3.64922 3.79733 4.10188 4.17087 4.36828 4.40829 4.42983 4.51523 4.58968 4.65512 4.72031 4.73639 4.78441 4.81939 4.90808 5.12817 5.23117 5.26845 5.30492 5.38993 5.58834 5.98996 6.43100 6.73757 7.10183 7.37075 8.32155 8.93242 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.015422 B = 0.003262 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.112999 B = 8582.570063 C = 8926.430132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.167 3.833 3 H 0.048 0.952 4 N -0.696 5.696 5 C 0.558 3.442 6 O -0.568 6.568 7 C -0.083 4.083 8 C -0.077 4.077 9 C 0.100 3.900 10 F -0.113 7.113 11 C 0.052 3.948 12 F -0.120 7.120 13 C 0.091 3.909 14 F -0.121 7.121 15 C -0.076 4.076 16 C -0.106 4.106 17 C 0.125 3.875 18 N -0.664 5.664 19 C -0.283 4.283 20 H 0.047 0.953 21 C -0.091 4.091 22 N -0.977 5.977 23 Si 1.109 2.891 24 H -0.310 1.310 25 H -0.283 1.283 26 H -0.249 1.249 27 C 0.086 3.914 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.419 0.581 32 H 0.196 0.804 33 H 0.163 0.837 34 H 0.142 0.858 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.245 0.755 38 H 0.066 0.934 39 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.047 -20.858 17.612 28.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.062 3.938 3 H 0.067 0.933 4 N -0.349 5.349 5 C 0.344 3.656 6 O -0.447 6.447 7 C -0.087 4.087 8 C -0.096 4.096 9 C 0.080 3.920 10 F -0.092 7.092 11 C 0.031 3.969 12 F -0.098 7.098 13 C 0.071 3.929 14 F -0.100 7.100 15 C -0.096 4.096 16 C -0.126 4.126 17 C 0.000 4.000 18 N -0.394 5.394 19 C -0.411 4.411 20 H 0.065 0.935 21 C -0.282 4.282 22 N -0.624 5.624 23 Si 0.936 3.064 24 H -0.239 1.239 25 H -0.210 1.210 26 H -0.174 1.174 27 C -0.038 4.038 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.259 0.741 32 H 0.213 0.787 33 H 0.180 0.820 34 H 0.159 0.841 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.054 0.946 38 H 0.083 0.917 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.651 -19.883 18.162 27.516 hybrid contribution -1.138 0.543 -0.509 1.360 sum -6.789 -19.340 17.653 27.051 Atomic orbital electron populations 1.22033 0.93141 1.03763 1.01796 1.20490 0.95058 0.95762 0.82449 0.93333 1.45772 1.65953 1.14776 1.08373 1.18156 0.77714 0.86046 0.83646 1.90855 1.51358 1.17190 1.85334 1.19423 1.02349 0.93634 0.93249 1.21525 0.96099 0.92930 0.99078 1.17024 1.03028 0.79506 0.92479 1.91612 1.90205 1.30667 1.96691 1.17955 1.04536 0.90267 0.84186 1.91570 1.86483 1.81295 1.50471 1.17080 1.04273 0.88204 0.83385 1.91584 1.93608 1.79549 1.45225 1.21255 0.96435 1.02470 0.89450 1.23020 0.95109 1.01355 0.93079 1.22661 0.90903 0.91303 0.95174 1.46156 1.16414 1.12345 1.64446 1.19998 0.95279 0.90826 1.34972 0.93502 1.27002 0.98691 0.99704 1.02777 1.71009 1.37808 1.16975 1.36577 0.83271 0.72956 0.75003 0.75152 1.23874 1.21007 1.17397 1.23134 0.96446 0.90250 0.93962 0.93549 0.91878 0.88922 0.74108 0.78705 0.81972 0.84075 0.93114 0.91773 0.94630 0.91662 0.94300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.29 71.98 0.67 -2.63 16 2 C 0.17 4.44 2.43 44.99 0.11 4.55 16 3 H 0.05 1.91 7.36 -2.39 -0.02 1.90 16 4 N -0.70 -13.58 5.03 -445.50 -2.24 -15.82 16 5 C 0.56 13.45 7.73 86.75 0.67 14.12 16 6 O -0.57 -19.70 16.00 -3.94 -0.06 -19.76 16 7 C -0.08 -1.42 5.87 -20.10 -0.12 -1.53 16 8 C -0.08 -0.83 9.51 22.57 0.21 -0.61 16 9 C 0.10 1.35 7.29 22.36 0.16 1.51 16 10 F -0.11 -1.61 17.17 44.97 0.77 -0.83 16 11 C 0.05 0.87 7.32 22.53 0.16 1.04 16 12 F -0.12 -2.30 17.08 44.97 0.77 -1.53 16 13 C 0.09 1.62 7.29 22.36 0.16 1.78 16 14 F -0.12 -2.43 17.17 44.97 0.77 -1.66 16 15 C -0.08 -1.39 9.57 22.57 0.22 -1.18 16 16 C -0.11 -2.62 3.73 -10.37 -0.04 -2.66 16 17 C 0.12 4.04 8.08 83.17 0.67 4.71 16 18 N -0.66 -30.37 3.49 -738.03 -2.58 -32.94 16 19 C -0.28 -16.50 11.08 84.03 0.93 -15.57 16 20 H 0.05 2.98 8.06 -2.91 -0.02 2.95 16 21 C -0.09 -5.53 5.50 84.86 0.47 -5.06 16 22 N -0.98 -64.94 13.70 21.65 0.30 -64.64 16 23 Si 1.11 54.35 25.16 68.60 1.73 56.07 16 24 H -0.31 -15.81 7.11 99.48 0.71 -15.10 16 25 H -0.28 -13.15 6.51 99.48 0.65 -12.50 16 26 H -0.25 -10.48 6.20 99.48 0.62 -9.87 16 27 C 0.09 3.06 5.24 83.26 0.44 3.50 16 28 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.06 1.52 6.50 -2.39 -0.02 1.50 16 30 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.42 4.10 6.63 -92.71 -0.61 3.48 16 32 H 0.20 0.60 6.40 -2.91 -0.02 0.58 16 33 H 0.16 3.17 7.65 -2.91 -0.02 3.15 16 34 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.05 1.63 6.43 -2.39 -0.02 1.62 16 36 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.24 16.32 8.73 -92.71 -0.81 15.51 16 38 H 0.07 2.12 7.66 -2.39 -0.02 2.10 16 39 H 0.04 1.51 4.71 -2.39 -0.01 1.49 16 Total: -1.00 -80.65 337.26 4.50 -76.15 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: 0.33 Total: 3.01 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 4.72 Total: 1.96 kcal Atomic # 7 Polarization: -108.88 SS G_CDS: -4.52 Total: -113.40 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.06 Total: -19.76 kcal Atomic # 9 Polarization: -6.34 SS G_CDS: 2.31 Total: -4.02 kcal Atomic # 14 Polarization: 54.35 SS G_CDS: 1.73 Total: 56.07 kcal Total: -80.65 4.50 -76.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970473539.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.309 kcal (2) G-P(sol) polarization free energy of solvation -80.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds