Wall clock time and date at job start Tue Mar 31 2020 15:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.99940 * 2 1 4 4 C 1.54331 * 109.87828 * 238.90643 * 2 1 3 5 5 H 1.09000 * 110.87048 * 144.34069 * 4 2 1 6 6 N 1.46495 * 110.72037 * 21.14030 * 4 2 1 7 7 C 1.36937 * 120.00206 * 160.01987 * 6 4 2 8 8 H 1.08001 * 119.99834 * 0.02562 * 7 6 4 9 9 C 1.38813 * 120.00245 * 179.97438 * 7 6 4 10 10 N 1.31612 * 120.00003 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99974 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47085 * 90.00157 * 11 9 7 13 13 H 1.48506 * 109.47194 * 330.00180 * 11 9 7 14 14 H 1.48494 * 109.47296 * 210.00384 * 11 9 7 15 15 C 1.55156 * 102.94268 * 262.77712 * 4 2 1 16 16 C 1.54907 * 101.58189 * 324.50036 * 15 4 2 17 17 N 1.47022 * 109.88227 * 121.10171 * 2 1 3 18 18 C 1.34778 * 125.64549 * 300.50895 * 17 2 1 19 19 O 1.21588 * 119.99929 * 355.83783 * 18 17 2 20 20 C 1.47568 * 119.99745 * 175.83958 * 18 17 2 21 21 C 1.39752 * 120.13408 * 35.98210 * 20 18 17 22 22 C 1.37921 * 119.87884 * 179.79011 * 21 20 18 23 23 F 1.35102 * 119.92959 * 180.23342 * 22 21 20 24 24 C 1.38944 * 120.14411 * 0.46684 * 22 21 20 25 25 F 1.35101 * 119.86581 * 179.76263 * 24 22 21 26 26 C 1.38453 * 120.26671 * 359.78852 * 24 22 21 27 27 C 1.38211 * 120.11845 * 359.97438 * 26 24 22 28 28 F 1.35100 * 120.07108 * 180.02562 * 27 26 24 29 29 H 1.08993 * 109.47338 * 181.09476 * 1 2 3 30 30 H 1.09005 * 109.46933 * 301.09210 * 1 2 3 31 31 H 1.09000 * 109.47145 * 61.08955 * 1 2 3 32 32 H 0.97008 * 120.00226 * 340.02353 * 6 4 2 33 33 H 0.97005 * 120.00396 * 359.97438 * 10 9 7 34 34 H 1.09001 * 111.00205 * 82.57284 * 15 4 2 35 35 H 1.08997 * 111.00394 * 206.43002 * 15 4 2 36 36 H 1.08992 * 110.37091 * 155.84900 * 16 15 4 37 37 H 1.09004 * 110.36888 * 278.17028 * 16 15 4 38 38 H 1.08001 * 120.06309 * 0.02562 * 21 20 18 39 39 H 1.07992 * 119.93875 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 -1.2428 5 1 2.9650 -0.2844 -1.6212 6 7 1.0292 -0.8025 -2.2875 7 6 1.3876 -1.0414 -3.5874 8 1 2.4263 -1.1912 -3.8423 9 6 0.4157 -1.0922 -4.5773 10 7 -0.8502 -0.9101 -4.2665 11 14 0.9046 -1.4188 -6.3503 12 1 0.8886 -2.8814 -6.6068 13 1 2.2704 -0.8886 -6.5930 14 1 -0.0564 -0.7461 -7.2608 15 6 2.3517 -2.1695 -0.6926 16 6 2.8567 -1.8500 0.7366 17 7 2.0300 -0.7142 1.1838 18 6 1.7743 -0.3854 2.4656 19 8 1.1384 0.6191 2.7203 20 6 2.2660 -1.2447 3.5599 21 6 3.5047 -1.8822 3.4488 22 6 3.9612 -2.6807 4.4765 23 9 5.1606 -3.2937 4.3722 24 6 3.1880 -2.8599 5.6170 25 9 3.6385 -3.6471 6.6183 26 6 1.9576 -2.2355 5.7312 27 6 1.4917 -1.4290 4.7100 28 9 0.2912 -0.8198 4.8227 29 1 -0.3633 -1.0274 0.0196 30 1 -0.3633 0.5307 0.8801 31 1 -0.3633 0.4968 -0.8996 32 1 0.0961 -0.6683 -2.0586 33 1 -1.1042 -0.7409 -3.3458 34 1 1.4450 -2.7736 -0.6606 35 1 3.1269 -2.6618 -1.2798 36 1 2.7087 -2.7081 1.3920 37 1 3.9091 -1.5669 0.7127 38 1 4.1052 -1.7469 2.5613 39 1 1.3612 -2.3781 6.6201 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986764455.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:20 Heat of formation + Delta-G solvation = -108.538727 kcal Electronic energy + Delta-G solvation = -28082.354436 eV Core-core repulsion = 23576.697715 eV Total energy + Delta-G solvation = -4505.656720 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.04117 -49.39426 -49.09681 -40.65289 -38.82235 -37.55700 -34.64621 -32.55707 -31.26651 -30.89772 -30.60377 -28.68347 -25.40684 -24.97078 -23.89637 -23.24334 -22.62497 -20.55954 -19.22337 -18.69998 -18.45571 -17.91468 -17.57088 -17.07401 -16.89590 -16.18250 -15.98472 -15.68546 -15.51524 -15.45715 -15.10387 -14.98750 -14.82400 -14.31362 -14.06741 -13.74048 -13.51045 -13.03369 -12.83299 -12.69651 -12.44325 -12.27470 -12.18493 -11.94088 -11.83210 -11.40782 -10.94209 -10.72901 -10.43744 -10.30179 -10.07836 -10.00300 -9.77601 -9.27880 -9.19119 -9.01816 -8.66953 -7.16707 -6.19824 -3.21972 -0.08813 0.22345 2.18286 2.64960 2.91688 3.05106 3.41025 3.46954 3.51176 3.65418 3.76567 3.78904 4.02215 4.33391 4.58266 4.74939 4.82525 4.92238 5.02720 5.06596 5.14194 5.21245 5.29562 5.33762 5.38791 5.54119 5.59608 5.79209 5.86468 5.98640 6.00450 6.09180 6.32504 6.39165 6.47348 6.56774 6.78039 7.41216 7.71422 7.96316 8.65622 9.09906 9.96420 10.09910 11.27839 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.021540 B = 0.002957 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.600342 B = 9467.744965 C =10327.087975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.129 3.871 3 H 0.078 0.922 4 C 0.180 3.820 5 H 0.067 0.933 6 N -0.728 5.728 7 C -0.338 4.338 8 H 0.067 0.933 9 C -0.041 4.041 10 N -0.940 5.940 11 Si 1.083 2.917 12 H -0.295 1.295 13 H -0.294 1.294 14 H -0.287 1.287 15 C -0.153 4.153 16 C 0.087 3.913 17 N -0.598 5.598 18 C 0.572 3.428 19 O -0.519 6.519 20 C -0.140 4.140 21 C -0.071 4.071 22 C 0.055 3.945 23 F -0.119 7.119 24 C 0.120 3.880 25 F -0.115 7.115 26 C -0.171 4.171 27 C 0.177 3.823 28 F -0.104 7.104 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.375 0.625 33 H 0.255 0.745 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.168 0.832 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.691 -4.310 19.923 22.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.025 3.975 3 H 0.096 0.904 4 C 0.068 3.932 5 H 0.084 0.916 6 N -0.373 5.373 7 C -0.468 4.468 8 H 0.085 0.915 9 C -0.239 4.239 10 N -0.585 5.585 11 Si 0.914 3.086 12 H -0.223 1.223 13 H -0.221 1.221 14 H -0.213 1.213 15 C -0.194 4.194 16 C -0.036 4.036 17 N -0.332 5.332 18 C 0.359 3.641 19 O -0.395 6.395 20 C -0.145 4.145 21 C -0.091 4.091 22 C 0.034 3.966 23 F -0.097 7.097 24 C 0.099 3.901 25 F -0.093 7.093 26 C -0.191 4.191 27 C 0.156 3.844 28 F -0.082 7.082 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.212 0.788 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.185 0.815 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 8.958 -3.954 18.491 20.924 hybrid contribution 0.552 -0.165 1.939 2.022 sum 9.510 -4.119 20.429 22.908 Atomic orbital electron populations 1.22021 0.94544 1.02464 1.02825 1.21912 0.95397 0.96060 0.84081 0.90434 1.21122 0.93174 0.92017 0.86915 0.91560 1.42670 1.04475 1.86383 1.03767 1.20063 0.94937 1.46877 0.84967 0.91538 1.25802 0.93556 1.00250 1.04306 1.70863 1.16208 1.51177 1.20230 0.83188 0.74402 0.76185 0.74835 1.22258 1.22070 1.21348 1.23570 1.01921 1.01389 0.92541 1.22708 0.94485 0.88537 0.97833 1.48477 1.49722 1.30375 1.04590 1.17319 0.80619 0.84958 0.81179 1.90853 1.40070 1.25666 1.82939 1.19956 0.96048 1.02474 0.96006 1.21424 0.95352 0.93560 0.98717 1.17398 0.83977 1.00030 0.95187 1.91586 1.41210 1.80808 1.96137 1.17413 0.93273 0.93886 0.85528 1.91591 1.88651 1.71037 1.58067 1.20910 0.96314 1.00381 1.01497 1.17169 0.82023 0.92554 0.92616 1.91648 1.40747 1.80100 1.95730 0.92414 0.91838 0.90379 0.78802 0.93343 0.90593 0.90175 0.90815 0.90990 0.81456 0.81555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 7.95 37.16 0.30 -2.54 16 2 C 0.13 2.13 3.46 -66.95 -0.23 1.90 16 3 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 4 C 0.18 3.26 3.46 -66.10 -0.23 3.03 16 5 H 0.07 1.21 8.12 -51.93 -0.42 0.79 16 6 N -0.73 -16.90 5.02 -51.65 -0.26 -17.16 16 7 C -0.34 -8.92 9.98 -15.06 -0.15 -9.07 16 8 H 0.07 1.72 7.83 -52.49 -0.41 1.30 16 9 C -0.04 -1.14 5.50 -17.43 -0.10 -1.24 16 10 N -0.94 -28.09 13.70 55.49 0.76 -27.33 16 11 Si 1.08 24.96 29.92 -169.99 -5.09 19.87 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 15 C -0.15 -2.32 6.77 -24.58 -0.17 -2.48 16 16 C 0.09 1.01 5.13 -2.53 -0.01 1.00 16 17 N -0.60 -8.49 3.08 -164.22 -0.51 -9.00 16 18 C 0.57 8.40 7.17 -12.45 -0.09 8.31 16 19 O -0.52 -9.34 15.18 5.29 0.08 -9.26 16 20 C -0.14 -1.59 5.52 -104.92 -0.58 -2.17 16 21 C -0.07 -0.64 7.87 -39.13 -0.31 -0.95 16 22 C 0.05 0.48 7.29 -39.44 -0.29 0.19 16 23 F -0.12 -1.13 17.17 2.25 0.04 -1.09 16 24 C 0.12 1.02 7.31 -39.24 -0.29 0.73 16 25 F -0.12 -1.03 17.17 2.25 0.04 -0.99 16 26 C -0.17 -1.38 9.99 -39.51 -0.39 -1.77 16 27 C 0.18 1.90 7.24 -38.98 -0.28 1.61 16 28 F -0.10 -1.33 16.13 2.25 0.04 -1.30 16 29 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 30 H 0.06 1.12 6.90 -51.93 -0.36 0.77 16 31 H 0.08 1.48 6.67 -51.93 -0.35 1.14 16 32 H 0.37 8.99 3.76 -40.82 -0.15 8.83 16 33 H 0.26 7.51 6.78 -40.82 -0.28 7.23 16 34 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 0.73 6.58 -51.93 -0.34 0.39 16 37 H 0.07 0.67 7.24 -51.93 -0.38 0.30 16 38 H 0.17 1.26 5.43 -52.49 -0.29 0.98 16 39 H 0.17 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 333.19 15.07 5.02 5.02 Total: -1.00 -31.33 333.19 -6.57 -37.90 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -3.88 Total: 6.77 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -2.82 Total: -3.44 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: -0.01 Total: -53.49 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.08 Total: -9.26 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.11 Total: -3.37 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -5.09 Total: 19.87 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.33 -6.57 -37.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986764455.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.642 kcal (2) G-P(sol) polarization free energy of solvation -31.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds