Wall clock time and date at job start Tue Mar 31 2020 15:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.99940 * 2 1 4 4 C 1.54331 * 109.87828 * 238.90643 * 2 1 3 5 5 H 1.09000 * 110.87048 * 144.34069 * 4 2 1 6 6 N 1.46495 * 110.72037 * 21.14030 * 4 2 1 7 7 C 1.36937 * 120.00206 * 160.01987 * 6 4 2 8 8 H 1.08001 * 119.99834 * 0.02562 * 7 6 4 9 9 C 1.38813 * 120.00245 * 179.97438 * 7 6 4 10 10 N 1.31612 * 120.00003 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99974 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47085 * 90.00157 * 11 9 7 13 13 H 1.48506 * 109.47194 * 330.00180 * 11 9 7 14 14 H 1.48494 * 109.47296 * 210.00384 * 11 9 7 15 15 C 1.55156 * 102.94268 * 262.77712 * 4 2 1 16 16 C 1.54907 * 101.58189 * 324.50036 * 15 4 2 17 17 N 1.47022 * 109.88227 * 121.10171 * 2 1 3 18 18 C 1.34778 * 125.64549 * 300.50895 * 17 2 1 19 19 O 1.21588 * 119.99929 * 355.83783 * 18 17 2 20 20 C 1.47568 * 119.99745 * 175.83958 * 18 17 2 21 21 C 1.39752 * 120.13408 * 35.98210 * 20 18 17 22 22 C 1.37921 * 119.87884 * 179.79011 * 21 20 18 23 23 F 1.35102 * 119.92959 * 180.23342 * 22 21 20 24 24 C 1.38944 * 120.14411 * 0.46684 * 22 21 20 25 25 F 1.35101 * 119.86581 * 179.76263 * 24 22 21 26 26 C 1.38453 * 120.26671 * 359.78852 * 24 22 21 27 27 C 1.38211 * 120.11845 * 359.97438 * 26 24 22 28 28 F 1.35100 * 120.07108 * 180.02562 * 27 26 24 29 29 H 1.08993 * 109.47338 * 181.09476 * 1 2 3 30 30 H 1.09005 * 109.46933 * 301.09210 * 1 2 3 31 31 H 1.09000 * 109.47145 * 61.08955 * 1 2 3 32 32 H 0.97008 * 120.00226 * 340.02353 * 6 4 2 33 33 H 0.97005 * 120.00396 * 359.97438 * 10 9 7 34 34 H 1.09001 * 111.00205 * 82.57284 * 15 4 2 35 35 H 1.08997 * 111.00394 * 206.43002 * 15 4 2 36 36 H 1.08992 * 110.37091 * 155.84900 * 16 15 4 37 37 H 1.09004 * 110.36888 * 278.17028 * 16 15 4 38 38 H 1.08001 * 120.06309 * 0.02562 * 21 20 18 39 39 H 1.07992 * 119.93875 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 -1.2428 5 1 2.9650 -0.2844 -1.6212 6 7 1.0292 -0.8025 -2.2875 7 6 1.3876 -1.0414 -3.5874 8 1 2.4263 -1.1912 -3.8423 9 6 0.4157 -1.0922 -4.5773 10 7 -0.8502 -0.9101 -4.2665 11 14 0.9046 -1.4188 -6.3503 12 1 0.8886 -2.8814 -6.6068 13 1 2.2704 -0.8886 -6.5930 14 1 -0.0564 -0.7461 -7.2608 15 6 2.3517 -2.1695 -0.6926 16 6 2.8567 -1.8500 0.7366 17 7 2.0300 -0.7142 1.1838 18 6 1.7743 -0.3854 2.4656 19 8 1.1384 0.6191 2.7203 20 6 2.2660 -1.2447 3.5599 21 6 3.5047 -1.8822 3.4488 22 6 3.9612 -2.6807 4.4765 23 9 5.1606 -3.2937 4.3722 24 6 3.1880 -2.8599 5.6170 25 9 3.6385 -3.6471 6.6183 26 6 1.9576 -2.2355 5.7312 27 6 1.4917 -1.4290 4.7100 28 9 0.2912 -0.8198 4.8227 29 1 -0.3633 -1.0274 0.0196 30 1 -0.3633 0.5307 0.8801 31 1 -0.3633 0.4968 -0.8996 32 1 0.0961 -0.6683 -2.0586 33 1 -1.1042 -0.7409 -3.3458 34 1 1.4450 -2.7736 -0.6606 35 1 3.1269 -2.6618 -1.2798 36 1 2.7087 -2.7081 1.3920 37 1 3.9091 -1.5669 0.7127 38 1 4.1052 -1.7469 2.5613 39 1 1.3612 -2.3781 6.6201 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986764455.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:19 Heat of formation + Delta-G solvation = -127.103709 kcal Electronic energy + Delta-G solvation = -28083.159474 eV Core-core repulsion = 23576.697715 eV Total energy + Delta-G solvation = -4506.461758 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.74374 -50.27439 -49.80224 -41.77445 -39.79098 -38.78296 -36.32921 -33.90852 -32.54718 -32.09505 -31.44844 -30.23504 -26.81131 -25.99818 -25.40722 -24.38924 -23.69555 -21.70579 -20.49987 -19.55740 -19.46612 -19.29091 -18.76860 -17.97166 -17.73093 -17.18801 -17.04085 -16.94494 -16.68537 -16.27213 -16.18179 -15.88079 -15.80654 -15.52931 -15.37442 -15.02527 -14.72417 -14.42906 -14.05376 -13.85234 -13.63249 -13.41410 -13.35528 -13.01786 -12.98510 -12.78399 -12.58007 -12.41052 -11.97248 -11.83350 -11.71334 -11.28360 -11.19940 -10.91512 -10.49209 -10.02683 -9.80715 -9.11709 -8.36024 -5.31585 -0.87214 -0.47451 1.25553 1.57002 1.62359 1.71976 1.85469 2.00584 2.29983 2.65566 2.73886 2.96746 3.03171 3.19823 3.40581 3.56904 3.60007 3.69970 3.79806 4.03608 4.11795 4.21201 4.23187 4.24996 4.33017 4.44238 4.46988 4.52769 4.58966 4.62465 4.72606 4.92093 5.07190 5.12719 5.16032 5.29256 5.38749 5.64627 6.28114 6.51482 6.81859 7.09837 8.00132 8.11350 9.15343 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.021540 B = 0.002957 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.600342 B = 9467.744965 C =10327.087975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.135 3.865 3 H 0.074 0.926 4 C 0.171 3.829 5 H 0.070 0.930 6 N -0.745 5.745 7 C -0.326 4.326 8 H 0.074 0.926 9 C -0.105 4.105 10 N -0.978 5.978 11 Si 1.129 2.871 12 H -0.286 1.286 13 H -0.270 1.270 14 H -0.299 1.299 15 C -0.145 4.145 16 C 0.093 3.907 17 N -0.597 5.597 18 C 0.571 3.429 19 O -0.561 6.561 20 C -0.153 4.153 21 C -0.057 4.057 22 C 0.060 3.940 23 F -0.119 7.119 24 C 0.127 3.873 25 F -0.114 7.114 26 C -0.152 4.152 27 C 0.163 3.837 28 F -0.122 7.122 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.367 0.633 33 H 0.243 0.757 34 H 0.055 0.945 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.186 0.814 39 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.341 -5.786 21.215 25.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.031 3.969 3 H 0.092 0.908 4 C 0.061 3.939 5 H 0.088 0.912 6 N -0.389 5.389 7 C -0.457 4.457 8 H 0.092 0.908 9 C -0.296 4.296 10 N -0.627 5.627 11 Si 0.955 3.045 12 H -0.212 1.212 13 H -0.195 1.195 14 H -0.226 1.226 15 C -0.185 4.185 16 C -0.029 4.029 17 N -0.330 5.330 18 C 0.360 3.640 19 O -0.440 6.440 20 C -0.157 4.157 21 C -0.076 4.076 22 C 0.039 3.961 23 F -0.098 7.098 24 C 0.106 3.894 25 F -0.093 7.093 26 C -0.171 4.171 27 C 0.142 3.858 28 F -0.100 7.100 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.203 0.797 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.118 0.882 37 H 0.127 0.873 38 H 0.203 0.797 39 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 11.683 -5.459 19.832 23.656 hybrid contribution -0.197 0.282 1.669 1.705 sum 11.485 -5.178 21.502 24.921 Atomic orbital electron populations 1.21858 0.95762 1.01510 1.01505 1.21631 0.94302 0.96102 0.84824 0.90843 1.21341 0.91952 0.94286 0.86315 0.91161 1.42863 1.05246 1.86700 1.04100 1.20421 0.95061 1.44025 0.86216 0.90773 1.27138 0.93278 1.01053 1.08170 1.70972 1.17657 1.54519 1.19515 0.82590 0.74903 0.76435 0.70596 1.21249 1.19525 1.22608 1.23371 1.01605 0.98629 0.94925 1.22914 0.95653 0.88593 0.95693 1.48458 1.49883 1.30710 1.03931 1.17782 0.79788 0.84752 0.81641 1.90830 1.42008 1.27612 1.83567 1.19682 0.97378 1.03370 0.95262 1.21428 0.94255 0.92607 0.99338 1.17370 0.83837 0.99724 0.95123 1.91595 1.41280 1.80781 1.96132 1.17447 0.93173 0.93434 0.85332 1.91604 1.88620 1.70972 1.58068 1.21024 0.96073 0.98646 1.01369 1.17388 0.81663 0.93407 0.93296 1.91606 1.41885 1.80664 1.95864 0.93178 0.92231 0.92402 0.79720 0.94692 0.92660 0.88912 0.88172 0.87333 0.79669 0.78988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.45 7.95 71.98 0.57 -4.88 16 2 C 0.14 4.48 3.46 45.34 0.16 4.64 16 3 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 4 C 0.17 6.07 3.46 46.18 0.16 6.23 16 5 H 0.07 2.46 8.12 -2.39 -0.02 2.44 16 6 N -0.74 -35.04 5.02 -317.33 -1.59 -36.63 16 7 C -0.33 -17.18 9.98 84.03 0.84 -16.35 16 8 H 0.07 3.73 7.83 -2.91 -0.02 3.70 16 9 C -0.11 -5.90 5.50 84.86 0.47 -5.44 16 10 N -0.98 -60.17 13.70 21.65 0.30 -59.88 16 11 Si 1.13 50.29 29.92 68.60 2.05 52.34 16 12 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 13 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 14 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 15 C -0.14 -4.10 6.77 31.99 0.22 -3.88 16 16 C 0.09 1.85 5.13 86.85 0.45 2.30 16 17 N -0.60 -16.08 3.08 -791.72 -2.44 -18.52 16 18 C 0.57 16.21 7.17 86.70 0.62 16.83 16 19 O -0.56 -20.39 15.18 -3.99 -0.06 -20.45 16 20 C -0.15 -3.15 5.52 -20.06 -0.11 -3.26 16 21 C -0.06 -0.83 7.87 22.56 0.18 -0.65 16 22 C 0.06 0.85 7.29 22.36 0.16 1.01 16 23 F -0.12 -1.83 17.17 44.97 0.77 -1.05 16 24 C 0.13 1.74 7.31 22.49 0.16 1.90 16 25 F -0.11 -1.67 17.17 44.97 0.77 -0.89 16 26 C -0.15 -2.01 9.99 22.31 0.22 -1.78 16 27 C 0.16 3.21 7.24 22.66 0.16 3.38 16 28 F -0.12 -3.07 16.13 44.97 0.73 -2.35 16 29 H 0.05 1.87 8.08 -2.39 -0.02 1.86 16 30 H 0.06 2.21 6.90 -2.38 -0.02 2.19 16 31 H 0.06 2.34 6.67 -2.39 -0.02 2.33 16 32 H 0.37 18.32 3.76 -92.70 -0.35 17.98 16 33 H 0.24 14.93 6.78 -92.70 -0.63 14.30 16 34 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.10 1.55 6.58 -2.39 -0.02 1.54 16 37 H 0.11 1.47 7.24 -2.38 -0.02 1.46 16 38 H 0.19 1.94 5.43 -2.91 -0.02 1.93 16 39 H 0.19 1.49 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -69.89 333.19 5.71 -64.18 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: 0.92 Total: 23.20 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 4.26 Total: 0.06 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -3.73 Total: -115.03 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.06 Total: -20.45 kcal Atomic # 9 Polarization: -6.56 SS G_CDS: 2.27 Total: -4.29 kcal Atomic # 14 Polarization: 50.29 SS G_CDS: 2.05 Total: 52.34 kcal Total: -69.89 5.71 -64.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986764455.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.920 kcal (2) G-P(sol) polarization free energy of solvation -69.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds