Wall clock time and date at job start Tue Mar 31 2020 15:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.87574 * 2 1 4 4 C 1.54377 * 109.89824 * 121.14141 * 2 1 3 5 5 H 1.09003 * 110.75358 * 259.94162 * 4 2 1 6 6 N 1.46501 * 110.70474 * 23.22802 * 4 2 1 7 7 C 1.36940 * 119.99937 * 202.74822 * 6 4 2 8 8 H 1.08002 * 119.99446 * 0.02562 * 7 6 4 9 9 C 1.38807 * 120.00200 * 180.02562 * 7 6 4 10 10 N 1.31617 * 119.99871 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00171 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.46948 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47460 * 119.99665 * 11 9 7 14 14 H 1.48508 * 109.47019 * 239.99673 * 11 9 7 15 15 C 1.55156 * 102.91853 * 141.57442 * 4 2 1 16 16 C 1.54911 * 101.61713 * 324.54622 * 15 4 2 17 17 N 1.47020 * 109.88012 * 238.97622 * 2 1 3 18 18 C 1.34780 * 125.64406 * 61.61544 * 17 2 1 19 19 O 1.21579 * 120.00282 * 355.15568 * 18 17 2 20 20 C 1.47581 * 119.99941 * 175.16255 * 18 17 2 21 21 C 1.39739 * 120.13075 * 40.11687 * 20 18 17 22 22 C 1.37753 * 119.94175 * 179.79220 * 21 20 18 23 23 C 1.38715 * 120.21181 * 0.48767 * 22 21 20 24 24 F 1.35102 * 119.86417 * 179.71922 * 23 22 21 25 25 C 1.38660 * 120.26716 * 359.74697 * 23 22 21 26 26 F 1.35098 * 119.97219 * 179.97438 * 25 23 22 27 27 C 1.38377 * 120.05429 * 0.02562 * 25 23 22 28 28 F 1.35101 * 120.10674 * 179.97438 * 27 25 23 29 29 H 1.08996 * 109.47401 * 173.42303 * 1 2 3 30 30 H 1.09001 * 109.46984 * 293.42443 * 1 2 3 31 31 H 1.09002 * 109.46860 * 53.41588 * 1 2 3 32 32 H 0.96998 * 120.00491 * 22.75569 * 6 4 2 33 33 H 0.96998 * 120.00310 * 180.02562 * 10 9 7 34 34 H 1.09005 * 111.00149 * 206.45278 * 15 4 2 35 35 H 1.09000 * 111.00217 * 82.64022 * 15 4 2 36 36 H 1.09005 * 110.36456 * 155.83109 * 16 15 4 37 37 H 1.08998 * 110.36463 * 278.15101 * 16 15 4 38 38 H 1.08004 * 120.03046 * 0.02562 * 21 20 18 39 39 H 1.08003 * 119.89219 * 180.25162 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0554 -0.7507 1.2424 5 1 2.3543 -0.0482 2.0204 6 7 1.0476 -1.6868 1.7466 7 6 1.0888 -2.0999 3.0516 8 1 1.8641 -1.7352 3.7091 9 6 0.1343 -2.9872 3.5292 10 7 -0.8108 -3.4312 2.7279 11 14 0.1901 -3.5501 5.3095 12 1 1.3412 -2.9099 5.9951 13 1 -1.0708 -3.1622 5.9911 14 1 0.3447 -5.0264 5.3572 15 6 3.2875 -1.5153 0.6904 16 6 2.8144 -1.8785 -0.7393 17 7 2.0300 -0.7126 -1.1848 18 6 1.8074 -0.3587 -2.4662 19 8 1.0702 0.5741 -2.7200 20 6 2.4584 -1.1038 -3.5612 21 6 2.5728 -2.4948 -3.4921 22 6 3.1774 -3.1868 -4.5184 23 6 3.6826 -2.5063 -5.6165 24 9 4.2792 -3.1914 -6.6164 25 6 3.5782 -1.1257 -5.6918 26 9 4.0728 -0.4689 -6.7638 27 6 2.9689 -0.4199 -4.6693 28 9 2.8671 0.9253 -4.7413 29 1 -0.3634 -1.0208 -0.1177 30 1 -0.3633 0.4085 0.9430 31 1 -0.3633 0.6125 -0.8252 32 1 0.3511 -2.0141 1.1561 33 1 -1.4781 -4.0510 3.0617 34 1 3.4850 -2.4129 1.2765 35 1 4.1657 -0.8704 0.6593 36 1 3.6716 -2.0321 -1.3949 37 1 2.1885 -2.7706 -0.7165 38 1 2.1841 -3.0273 -2.6366 39 1 3.2617 -4.2622 -4.4661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986777135.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:51 Heat of formation + Delta-G solvation = -112.216292 kcal Electronic energy + Delta-G solvation = -28225.633658 eV Core-core repulsion = 23719.817467 eV Total energy + Delta-G solvation = -4505.816191 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -50.08605 -49.49348 -48.74799 -40.52295 -38.74628 -37.42656 -34.14739 -32.18158 -31.05854 -31.05312 -30.63336 -28.79587 -25.45994 -24.71450 -23.79777 -23.41867 -22.41317 -20.38384 -19.15047 -18.59371 -18.23240 -17.92946 -17.46539 -17.14336 -16.50267 -16.34978 -16.05335 -15.75188 -15.22976 -15.19963 -14.87376 -14.68602 -14.63228 -14.04423 -13.92886 -13.70509 -13.34722 -13.01939 -12.73397 -12.52956 -12.32456 -12.28485 -12.15707 -11.80566 -11.40017 -11.06666 -11.04012 -10.84851 -10.71751 -10.33598 -10.11561 -9.84983 -9.69912 -9.36215 -9.32704 -9.03898 -8.50587 -7.11385 -5.89582 -3.19545 0.04102 0.31936 2.33006 2.70435 3.01138 3.09011 3.35471 3.42060 3.44018 3.73737 3.80305 4.02317 4.07794 4.32627 4.48041 4.86568 4.92351 5.06760 5.22568 5.31120 5.31566 5.37136 5.45933 5.48580 5.53877 5.63302 5.71014 5.87992 5.97615 6.11316 6.22098 6.33269 6.42208 6.52891 6.60183 6.75974 6.91828 7.57669 7.60190 8.10945 8.28493 9.40708 9.94579 10.29730 11.32503 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.021756 B = 0.003067 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.709210 B = 9128.595438 C = 9821.989328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.127 3.873 3 H 0.074 0.926 4 C 0.172 3.828 5 H 0.072 0.928 6 N -0.714 5.714 7 C -0.245 4.245 8 H 0.073 0.927 9 C -0.008 4.008 10 N -0.929 5.929 11 Si 0.907 3.093 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.292 1.292 15 C -0.160 4.160 16 C 0.096 3.904 17 N -0.597 5.597 18 C 0.571 3.429 19 O -0.522 6.522 20 C -0.139 4.139 21 C -0.041 4.041 22 C -0.139 4.139 23 C 0.116 3.884 24 F -0.116 7.116 25 C 0.024 3.976 26 F -0.115 7.115 27 C 0.148 3.852 28 F -0.101 7.101 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.388 0.612 33 H 0.256 0.744 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.164 0.836 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.352 0.953 -14.402 17.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.024 3.976 3 H 0.092 0.908 4 C 0.060 3.940 5 H 0.089 0.911 6 N -0.356 5.356 7 C -0.376 4.376 8 H 0.091 0.909 9 C -0.205 4.205 10 N -0.577 5.577 11 Si 0.738 3.262 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.219 1.219 15 C -0.201 4.201 16 C -0.026 4.026 17 N -0.330 5.330 18 C 0.358 3.642 19 O -0.399 6.399 20 C -0.143 4.143 21 C -0.059 4.059 22 C -0.158 4.158 23 C 0.095 3.905 24 F -0.095 7.095 25 C 0.003 3.997 26 F -0.093 7.093 27 C 0.126 3.874 28 F -0.079 7.079 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.225 0.775 33 H 0.066 0.934 34 H 0.109 0.891 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.181 0.819 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 9.977 1.504 -14.483 17.652 hybrid contribution 0.021 -0.375 0.256 0.455 sum 9.999 1.129 -14.227 17.426 Atomic orbital electron populations 1.21934 0.93870 1.02737 1.02208 1.22099 0.95715 0.95680 0.84088 0.90772 1.21220 0.89125 0.91668 0.91977 0.91066 1.42546 1.31110 1.51513 1.10415 1.19272 1.09964 1.21179 0.87190 0.90938 1.24739 0.97672 1.00077 0.97998 1.69661 1.17171 1.36210 1.34661 0.86133 0.77296 0.78160 0.84635 1.20508 1.21850 1.21872 1.23542 0.99394 1.02629 0.94559 1.22579 0.94543 0.88639 0.96820 1.48532 1.51417 1.28588 1.04456 1.17299 0.81866 0.83735 0.81302 1.90837 1.36698 1.29378 1.82986 1.20061 1.03824 0.94789 0.95671 1.21470 0.94153 0.91653 0.98640 1.21138 1.00344 1.02189 0.92081 1.17562 0.97770 0.87253 0.87879 1.91583 1.80673 1.78764 1.58434 1.17366 1.05600 0.89331 0.87437 1.91575 1.85380 1.80469 1.51921 1.17233 0.98520 0.78345 0.93268 1.91634 1.93346 1.27071 1.95876 0.91778 0.91021 0.92555 0.77529 0.93422 0.89114 0.91870 0.91300 0.90462 0.81882 0.82040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 8.18 37.16 0.30 -2.36 16 2 C 0.13 2.07 3.46 -66.92 -0.23 1.84 16 3 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 4 C 0.17 2.98 3.48 -66.07 -0.23 2.75 16 5 H 0.07 1.23 8.11 -51.93 -0.42 0.81 16 6 N -0.71 -15.66 4.60 -51.62 -0.24 -15.90 16 7 C -0.25 -6.13 9.97 -15.06 -0.15 -6.28 16 8 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 9 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 10 N -0.93 -26.10 13.06 55.49 0.72 -25.38 16 11 Si 0.91 20.98 29.55 -169.99 -5.02 15.96 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 15 C -0.16 -2.28 6.77 -24.58 -0.17 -2.45 16 16 C 0.10 1.23 5.19 -2.53 -0.01 1.21 16 17 N -0.60 -8.81 3.06 -164.19 -0.50 -9.31 16 18 C 0.57 8.85 7.16 -12.45 -0.09 8.76 16 19 O -0.52 -9.85 15.27 5.30 0.08 -9.77 16 20 C -0.14 -1.71 5.43 -104.92 -0.57 -2.28 16 21 C -0.04 -0.37 7.93 -39.20 -0.31 -0.68 16 22 C -0.14 -1.05 10.00 -39.58 -0.40 -1.45 16 23 C 0.12 1.09 7.31 -39.25 -0.29 0.81 16 24 F -0.12 -1.13 17.17 2.25 0.04 -1.09 16 25 C 0.02 0.27 7.30 -39.37 -0.29 -0.02 16 26 F -0.12 -1.40 17.09 2.25 0.04 -1.36 16 27 C 0.15 1.88 7.25 -38.92 -0.28 1.59 16 28 F -0.10 -1.50 16.17 2.25 0.04 -1.46 16 29 H 0.06 1.25 6.54 -51.93 -0.34 0.91 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.06 1.01 6.95 -51.93 -0.36 0.65 16 32 H 0.39 9.19 5.71 -40.82 -0.23 8.95 16 33 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.69 6.72 -51.93 -0.35 0.34 16 37 H 0.08 1.02 7.30 -51.93 -0.38 0.64 16 38 H 0.16 1.33 5.83 -52.48 -0.31 1.03 16 39 H 0.16 0.76 8.06 -52.48 -0.42 0.34 16 LS Contribution 336.14 15.07 5.07 5.07 Total: -1.00 -29.58 336.14 -6.63 -36.21 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -4.05 Total: 5.91 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -2.80 Total: 1.13 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: -0.02 Total: -50.59 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.08 Total: -9.77 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.11 Total: -3.92 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.58 -6.63 -36.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986777135.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.006 kcal (2) G-P(sol) polarization free energy of solvation -29.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds