Wall clock time and date at job start Tue Mar 31 2020 15:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.87574 * 2 1 4 4 C 1.54377 * 109.89824 * 121.14141 * 2 1 3 5 5 H 1.09003 * 110.75358 * 259.94162 * 4 2 1 6 6 N 1.46501 * 110.70474 * 23.22802 * 4 2 1 7 7 C 1.36940 * 119.99937 * 202.74822 * 6 4 2 8 8 H 1.08002 * 119.99446 * 0.02562 * 7 6 4 9 9 C 1.38807 * 120.00200 * 180.02562 * 7 6 4 10 10 N 1.31617 * 119.99871 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00171 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.46948 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47460 * 119.99665 * 11 9 7 14 14 H 1.48508 * 109.47019 * 239.99673 * 11 9 7 15 15 C 1.55156 * 102.91853 * 141.57442 * 4 2 1 16 16 C 1.54911 * 101.61713 * 324.54622 * 15 4 2 17 17 N 1.47020 * 109.88012 * 238.97622 * 2 1 3 18 18 C 1.34780 * 125.64406 * 61.61544 * 17 2 1 19 19 O 1.21579 * 120.00282 * 355.15568 * 18 17 2 20 20 C 1.47581 * 119.99941 * 175.16255 * 18 17 2 21 21 C 1.39739 * 120.13075 * 40.11687 * 20 18 17 22 22 C 1.37753 * 119.94175 * 179.79220 * 21 20 18 23 23 C 1.38715 * 120.21181 * 0.48767 * 22 21 20 24 24 F 1.35102 * 119.86417 * 179.71922 * 23 22 21 25 25 C 1.38660 * 120.26716 * 359.74697 * 23 22 21 26 26 F 1.35098 * 119.97219 * 179.97438 * 25 23 22 27 27 C 1.38377 * 120.05429 * 0.02562 * 25 23 22 28 28 F 1.35101 * 120.10674 * 179.97438 * 27 25 23 29 29 H 1.08996 * 109.47401 * 173.42303 * 1 2 3 30 30 H 1.09001 * 109.46984 * 293.42443 * 1 2 3 31 31 H 1.09002 * 109.46860 * 53.41588 * 1 2 3 32 32 H 0.96998 * 120.00491 * 22.75569 * 6 4 2 33 33 H 0.96998 * 120.00310 * 180.02562 * 10 9 7 34 34 H 1.09005 * 111.00149 * 206.45278 * 15 4 2 35 35 H 1.09000 * 111.00217 * 82.64022 * 15 4 2 36 36 H 1.09005 * 110.36456 * 155.83109 * 16 15 4 37 37 H 1.08998 * 110.36463 * 278.15101 * 16 15 4 38 38 H 1.08004 * 120.03046 * 0.02562 * 21 20 18 39 39 H 1.08003 * 119.89219 * 180.25162 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0554 -0.7507 1.2424 5 1 2.3543 -0.0482 2.0204 6 7 1.0476 -1.6868 1.7466 7 6 1.0888 -2.0999 3.0516 8 1 1.8641 -1.7352 3.7091 9 6 0.1343 -2.9872 3.5292 10 7 -0.8108 -3.4312 2.7279 11 14 0.1901 -3.5501 5.3095 12 1 1.3412 -2.9099 5.9951 13 1 -1.0708 -3.1622 5.9911 14 1 0.3447 -5.0264 5.3572 15 6 3.2875 -1.5153 0.6904 16 6 2.8144 -1.8785 -0.7393 17 7 2.0300 -0.7126 -1.1848 18 6 1.8074 -0.3587 -2.4662 19 8 1.0702 0.5741 -2.7200 20 6 2.4584 -1.1038 -3.5612 21 6 2.5728 -2.4948 -3.4921 22 6 3.1774 -3.1868 -4.5184 23 6 3.6826 -2.5063 -5.6165 24 9 4.2792 -3.1914 -6.6164 25 6 3.5782 -1.1257 -5.6918 26 9 4.0728 -0.4689 -6.7638 27 6 2.9689 -0.4199 -4.6693 28 9 2.8671 0.9253 -4.7413 29 1 -0.3634 -1.0208 -0.1177 30 1 -0.3633 0.4085 0.9430 31 1 -0.3633 0.6125 -0.8252 32 1 0.3511 -2.0141 1.1561 33 1 -1.4781 -4.0510 3.0617 34 1 3.4850 -2.4129 1.2765 35 1 4.1657 -0.8704 0.6593 36 1 3.6716 -2.0321 -1.3949 37 1 2.1885 -2.7706 -0.7165 38 1 2.1841 -3.0273 -2.6366 39 1 3.2617 -4.2622 -4.4661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986777135.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:49 Heat of formation + Delta-G solvation = -129.181701 kcal Electronic energy + Delta-G solvation = -28226.369334 eV Core-core repulsion = 23719.817467 eV Total energy + Delta-G solvation = -4506.551867 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.96783 -50.38356 -49.65176 -41.67180 -39.74490 -38.69133 -35.77937 -33.63513 -32.40496 -31.90333 -31.77802 -30.28972 -26.83999 -25.80398 -25.39174 -24.37761 -23.52826 -21.57250 -20.39765 -19.48417 -19.36162 -19.11628 -18.84238 -18.08895 -17.66930 -17.47690 -17.01175 -16.65501 -16.41359 -16.23465 -16.11653 -15.69269 -15.64598 -15.57783 -15.43175 -14.78323 -14.61137 -14.31399 -13.99034 -13.88409 -13.37136 -13.33637 -13.03926 -13.01777 -12.93722 -12.86216 -12.54283 -12.36297 -12.17269 -11.98132 -11.62492 -11.44749 -11.11369 -10.89806 -10.20215 -10.17684 -9.72275 -8.95050 -7.88364 -5.15752 -0.80622 -0.48767 1.34031 1.52423 1.54941 1.62751 1.66362 2.05968 2.15317 2.61205 2.90656 2.94785 3.07048 3.31208 3.43192 3.49151 3.73692 3.88117 3.91704 4.15875 4.28376 4.30812 4.31155 4.39772 4.54037 4.60099 4.67068 4.72563 4.76128 4.83271 4.95803 5.08698 5.24824 5.30782 5.35019 5.38724 5.45590 5.62583 6.33434 6.39966 6.91249 7.41791 8.14774 8.38695 9.34817 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.021756 B = 0.003067 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.709210 B = 9128.595438 C = 9821.989328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.132 3.868 3 H 0.082 0.918 4 C 0.164 3.836 5 H 0.073 0.927 6 N -0.723 5.723 7 C -0.231 4.231 8 H 0.080 0.920 9 C -0.069 4.069 10 N -0.967 5.967 11 Si 0.964 3.036 12 H -0.266 1.266 13 H -0.303 1.303 14 H -0.297 1.297 15 C -0.148 4.148 16 C 0.098 3.902 17 N -0.595 5.595 18 C 0.569 3.431 19 O -0.565 6.565 20 C -0.149 4.149 21 C -0.029 4.029 22 C -0.109 4.109 23 C 0.125 3.875 24 F -0.115 7.115 25 C 0.017 3.983 26 F -0.125 7.125 27 C 0.129 3.871 28 F -0.122 7.122 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.378 0.622 33 H 0.248 0.752 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.076 0.924 38 H 0.179 0.821 39 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.543 -0.539 -14.727 19.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.028 3.972 3 H 0.100 0.900 4 C 0.054 3.946 5 H 0.091 0.909 6 N -0.364 5.364 7 C -0.363 4.363 8 H 0.098 0.902 9 C -0.262 4.262 10 N -0.618 5.618 11 Si 0.795 3.205 12 H -0.190 1.190 13 H -0.231 1.231 14 H -0.224 1.224 15 C -0.189 4.189 16 C -0.023 4.023 17 N -0.327 5.327 18 C 0.358 3.642 19 O -0.445 6.445 20 C -0.153 4.153 21 C -0.047 4.047 22 C -0.127 4.127 23 C 0.105 3.895 24 F -0.093 7.093 25 C -0.004 4.004 26 F -0.103 7.103 27 C 0.108 3.892 28 F -0.100 7.100 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.213 0.787 33 H 0.057 0.943 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.124 0.876 37 H 0.094 0.906 38 H 0.196 0.804 39 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 12.242 0.027 -14.810 19.215 hybrid contribution -0.604 0.131 0.292 0.684 sum 11.638 0.157 -14.518 18.607 Atomic orbital electron populations 1.21766 0.95399 1.01121 1.01190 1.21929 0.94385 0.96247 0.84646 0.90007 1.21415 0.89423 0.91351 0.92374 0.90911 1.42641 1.32107 1.52222 1.09468 1.19628 1.08895 1.19394 0.88382 0.90198 1.25396 0.98174 1.01450 1.01182 1.69801 1.18276 1.37599 1.36086 0.85205 0.76996 0.77294 0.81016 1.18988 1.23063 1.22405 1.23390 0.98484 1.02107 0.94884 1.22722 0.95460 0.87543 0.96619 1.48528 1.51275 1.28925 1.03945 1.17758 0.81266 0.83325 0.81895 1.90811 1.38652 1.31431 1.83651 1.19840 1.04978 0.95875 0.94657 1.21637 0.93461 0.90053 0.99537 1.21492 0.97471 1.03794 0.89947 1.17661 0.97244 0.86386 0.88256 1.91599 1.80604 1.78509 1.58568 1.17474 1.05910 0.90086 0.86945 1.91548 1.85559 1.80895 1.52308 1.17400 0.99965 0.77663 0.94174 1.91574 1.93730 1.28670 1.96074 0.93674 0.92247 0.93151 0.78723 0.94282 0.89927 0.89251 0.87556 0.90596 0.80364 0.77986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.98 8.18 71.98 0.59 -4.39 16 2 C 0.13 4.19 3.46 45.36 0.16 4.35 16 3 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 4 C 0.16 5.46 3.48 46.20 0.16 5.62 16 5 H 0.07 2.41 8.11 -2.39 -0.02 2.39 16 6 N -0.72 -31.41 4.60 -317.24 -1.46 -32.87 16 7 C -0.23 -11.38 9.97 84.03 0.84 -10.54 16 8 H 0.08 3.75 7.83 -2.91 -0.02 3.73 16 9 C -0.07 -3.67 5.50 84.86 0.47 -3.20 16 10 N -0.97 -55.12 13.06 21.65 0.28 -54.83 16 11 Si 0.96 43.16 29.55 68.60 2.03 45.18 16 12 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 13 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 14 H -0.30 -13.38 7.11 99.48 0.71 -12.67 16 15 C -0.15 -3.79 6.77 31.99 0.22 -3.57 16 16 C 0.10 2.19 5.19 86.86 0.45 2.64 16 17 N -0.59 -16.68 3.06 -791.64 -2.43 -19.11 16 18 C 0.57 17.22 7.16 86.71 0.62 17.84 16 19 O -0.57 -21.73 15.27 -3.96 -0.06 -21.79 16 20 C -0.15 -3.43 5.43 -20.06 -0.11 -3.53 16 21 C -0.03 -0.42 7.93 22.52 0.18 -0.24 16 22 C -0.11 -1.14 10.00 22.27 0.22 -0.91 16 23 C 0.13 1.95 7.31 22.48 0.16 2.12 16 24 F -0.11 -1.86 17.17 44.97 0.77 -1.08 16 25 C 0.02 0.36 7.30 22.40 0.16 0.52 16 26 F -0.12 -2.95 17.09 44.97 0.77 -2.18 16 27 C 0.13 3.18 7.25 22.70 0.16 3.35 16 28 F -0.12 -3.70 16.17 44.97 0.73 -2.97 16 29 H 0.04 1.80 6.54 -2.39 -0.02 1.79 16 30 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.05 1.87 6.95 -2.39 -0.02 1.85 16 32 H 0.38 18.04 5.71 -92.71 -0.53 17.52 16 33 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 34 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 35 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.11 1.64 6.72 -2.38 -0.02 1.62 16 37 H 0.08 1.77 7.30 -2.39 -0.02 1.76 16 38 H 0.18 2.16 5.83 -2.91 -0.02 2.14 16 39 H 0.20 0.59 8.06 -2.91 -0.02 0.57 16 Total: -1.00 -66.04 336.14 5.51 -60.53 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.59 Total: 19.09 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 4.28 Total: 10.04 kcal Atomic # 7 Polarization: -103.21 SS G_CDS: -3.60 Total: -106.81 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.06 Total: -21.79 kcal Atomic # 9 Polarization: -8.51 SS G_CDS: 2.27 Total: -6.24 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -66.04 5.51 -60.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986777135.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.651 kcal (2) G-P(sol) polarization free energy of solvation -66.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds