Wall clock time and date at job start Tue Mar 31 2020 15:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 110.32350 * 2 1 4 4 C 1.54909 * 110.36610 * 122.22757 * 2 1 3 5 5 C 1.55159 * 101.58067 * 155.96042 * 4 2 1 6 6 H 1.08998 * 110.71572 * 82.86717 * 5 4 2 7 7 N 1.46499 * 110.72063 * 206.13946 * 5 4 2 8 8 C 1.36936 * 120.00069 * 199.97707 * 7 5 4 9 9 H 1.08007 * 119.99853 * 359.97438 * 8 7 5 10 10 C 1.38809 * 120.00287 * 179.97438 * 8 7 5 11 11 N 1.31618 * 119.99932 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00024 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47231 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46988 * 120.00202 * 12 10 8 15 15 H 1.48504 * 109.47103 * 240.00106 * 12 10 8 16 16 C 1.54328 * 102.94195 * 324.50003 * 5 4 2 17 17 N 1.47024 * 107.39933 * 22.11569 * 16 5 4 18 18 C 1.34778 * 125.64654 * 181.09989 * 17 16 5 19 19 O 1.21582 * 120.00112 * 174.84018 * 18 17 16 20 20 C 1.47575 * 119.99766 * 354.84126 * 18 17 16 21 21 C 1.39760 * 120.13143 * 315.76950 * 20 18 17 22 22 C 1.37918 * 119.87476 * 179.69666 * 21 20 18 23 23 F 1.35101 * 119.92969 * 180.29857 * 22 21 20 24 24 C 1.38951 * 120.14554 * 0.58457 * 22 21 20 25 25 F 1.35102 * 119.86473 * 179.69183 * 24 22 21 26 26 C 1.38448 * 120.26739 * 359.71827 * 24 22 21 27 27 C 1.38214 * 120.11702 * 359.97438 * 26 24 22 28 28 F 1.35105 * 120.06696 * 180.02562 * 27 26 24 29 29 H 1.08992 * 109.47182 * 297.76613 * 1 2 3 30 30 H 1.08999 * 109.46899 * 57.77147 * 1 2 3 31 31 H 1.08998 * 109.47073 * 177.76646 * 1 2 3 32 32 H 1.09000 * 111.00378 * 37.88950 * 4 2 1 33 33 H 1.09002 * 111.03967 * 274.05271 * 4 2 1 34 34 H 0.97002 * 119.99958 * 19.97415 * 7 5 4 35 35 H 0.96999 * 120.00301 * 179.97438 * 11 10 8 36 36 H 1.08999 * 109.87849 * 141.60739 * 16 5 4 37 37 H 1.08999 * 109.88390 * 262.61746 * 16 5 4 38 38 H 1.07996 * 120.06024 * 0.02562 * 21 20 18 39 39 H 1.07993 * 119.94159 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0692 -0.7745 1.2285 5 6 3.4789 -1.1964 0.7366 6 1 4.1942 -0.3856 0.8751 7 7 3.9273 -2.4085 1.4264 8 6 5.2596 -2.7229 1.4622 9 1 5.9799 -2.0773 0.9814 10 6 5.6846 -3.8711 2.1162 11 7 4.8069 -4.6581 2.7016 12 14 7.5020 -4.3003 2.1643 13 1 8.2752 -3.2621 1.4367 14 1 7.9595 -4.3591 3.5759 15 1 7.7161 -5.6206 1.5191 16 6 3.2524 -1.4745 -0.7644 17 7 2.0447 -0.7407 -1.1701 18 6 1.5011 -0.7435 -2.4034 19 8 0.4459 -0.1738 -2.6039 20 6 2.1868 -1.4381 -3.5103 21 6 3.5662 -1.2931 -3.6822 22 6 4.2025 -1.9496 -4.7147 23 9 5.5369 -1.8150 -4.8783 24 6 3.4735 -2.7444 -5.5908 25 9 4.1017 -3.3800 -6.6040 26 6 2.1058 -2.8872 -5.4299 27 6 1.4579 -2.2394 -4.3951 28 9 0.1233 -2.3798 -4.2387 29 1 -0.3633 0.4787 0.9093 30 1 -0.3633 0.5481 -0.8693 31 1 -0.3633 -1.0269 -0.0401 32 1 1.4523 -1.6475 1.4415 33 1 2.1379 -0.1250 2.1012 34 1 3.2804 -2.9884 1.8579 35 1 5.1037 -5.4607 3.1583 36 1 4.1096 -1.1245 -1.3396 37 1 3.1090 -2.5428 -0.9259 38 1 4.1335 -0.6724 -3.0046 39 1 1.5443 -3.5059 -6.1141 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989384825.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:43 Heat of formation + Delta-G solvation = -117.135156 kcal Electronic energy + Delta-G solvation = -28256.306439 eV Core-core repulsion = 23750.276950 eV Total energy + Delta-G solvation = -4506.029489 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -49.82999 -49.26356 -48.87988 -40.45244 -38.61426 -37.34025 -34.28131 -32.63674 -31.49184 -30.88200 -30.24490 -28.50737 -25.66777 -24.67495 -23.88265 -23.56414 -21.83508 -20.40941 -19.65208 -18.56781 -18.27411 -17.60122 -17.32129 -16.83833 -16.57272 -16.35936 -15.81339 -15.61917 -15.30621 -15.23995 -14.95653 -14.73506 -14.51327 -14.23506 -13.73276 -13.63176 -13.40029 -13.29691 -12.77931 -12.63572 -12.28488 -12.07717 -12.02762 -11.92774 -11.84016 -11.32478 -11.08924 -10.85905 -10.74983 -10.40209 -10.10604 -9.84036 -9.75350 -9.58726 -9.08807 -8.98096 -8.49683 -7.18447 -5.92340 -3.24037 0.12684 0.43151 2.34236 2.78029 3.06589 3.23791 3.34785 3.41147 3.43109 3.60457 3.95856 3.99914 4.20856 4.46334 4.53018 4.87182 4.98212 5.08971 5.12757 5.19247 5.24150 5.37070 5.40778 5.47931 5.50420 5.59305 5.75238 5.78206 6.00957 6.03219 6.09903 6.20152 6.30346 6.35405 6.40680 6.57186 6.75164 7.54203 7.58387 8.08101 8.24777 9.37133 9.89746 10.24271 11.29479 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.009544 B = 0.004660 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.967496 B = 6006.583554 C = 8132.594235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.138 3.862 3 H 0.077 0.923 4 C -0.137 4.137 5 C 0.173 3.827 6 H 0.068 0.932 7 N -0.712 5.712 8 C -0.252 4.252 9 H 0.074 0.926 10 C -0.006 4.006 11 N -0.928 5.928 12 Si 0.907 3.093 13 H -0.279 1.279 14 H -0.290 1.290 15 H -0.290 1.290 16 C 0.065 3.935 17 N -0.600 5.600 18 C 0.576 3.424 19 O -0.526 6.526 20 C -0.138 4.138 21 C -0.064 4.064 22 C 0.059 3.941 23 F -0.118 7.118 24 C 0.118 3.882 25 F -0.116 7.116 26 C -0.171 4.171 27 C 0.172 3.828 28 F -0.109 7.109 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.388 0.612 35 H 0.257 0.743 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.166 0.834 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.828 7.380 -13.533 16.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.035 3.965 3 H 0.095 0.905 4 C -0.175 4.175 5 C 0.061 3.939 6 H 0.086 0.914 7 N -0.352 5.352 8 C -0.382 4.382 9 H 0.092 0.908 10 C -0.203 4.203 11 N -0.575 5.575 12 Si 0.737 3.263 13 H -0.204 1.204 14 H -0.217 1.217 15 H -0.217 1.217 16 C -0.061 4.061 17 N -0.333 5.333 18 C 0.363 3.637 19 O -0.404 6.404 20 C -0.142 4.142 21 C -0.083 4.083 22 C 0.038 3.962 23 F -0.096 7.096 24 C 0.097 3.903 25 F -0.094 7.094 26 C -0.190 4.190 27 C 0.151 3.849 28 F -0.087 7.087 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.222 0.778 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.184 0.816 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -6.185 7.621 -13.706 16.858 hybrid contribution 1.105 -0.865 -0.097 1.407 sum -5.080 6.757 -13.802 16.185 Atomic orbital electron populations 1.22143 0.93963 1.02886 1.02785 1.22003 0.95046 0.95238 0.84190 0.90466 1.23160 0.97672 1.00492 0.96221 1.21168 0.93276 0.91235 0.88262 0.91424 1.42394 1.06096 1.23904 1.62816 1.19278 0.83824 1.05541 1.29605 0.90838 1.24774 0.97791 0.97513 1.00237 1.69665 1.32560 1.15323 1.39931 0.86136 0.84672 0.78077 0.77383 1.20375 1.21696 1.21719 1.23608 0.84857 0.96992 1.00654 1.48611 1.28682 1.47704 1.08305 1.17344 0.84323 0.80723 0.81349 1.90779 1.21369 1.45414 1.82857 1.19911 0.93537 1.02063 0.98723 1.21243 0.92903 0.98044 0.96080 1.17404 0.78789 1.01911 0.98054 1.91591 1.28622 1.94435 1.94998 1.17397 0.90222 0.95264 0.87389 1.91584 1.81997 1.79371 1.56471 1.20865 0.92794 1.04583 1.00796 1.17133 0.78203 0.95671 0.93899 1.91619 1.28750 1.93621 1.94691 0.92163 0.90114 0.92585 0.90340 0.89864 0.77776 0.93298 0.92058 0.90502 0.81629 0.81694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 8.53 37.16 0.32 -1.79 16 2 C 0.14 1.86 3.79 -66.24 -0.25 1.60 16 3 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 4 C -0.14 -1.98 6.11 -24.58 -0.15 -2.13 16 5 C 0.17 2.98 3.59 -66.09 -0.24 2.74 16 6 H 0.07 1.15 8.12 -51.93 -0.42 0.72 16 7 N -0.71 -16.06 5.17 -51.65 -0.27 -16.33 16 8 C -0.25 -6.39 9.98 -15.06 -0.15 -6.54 16 9 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 10 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 11 N -0.93 -26.54 13.06 55.49 0.72 -25.81 16 12 Si 0.91 21.23 29.55 -169.99 -5.02 16.20 16 13 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 C 0.06 1.01 5.64 -3.06 -0.02 0.99 16 17 N -0.60 -8.75 3.25 -164.01 -0.53 -9.29 16 18 C 0.58 8.72 7.06 -12.45 -0.09 8.63 16 19 O -0.53 -9.07 14.07 5.29 0.07 -8.99 16 20 C -0.14 -1.81 5.40 -104.91 -0.57 -2.38 16 21 C -0.06 -0.74 8.40 -39.13 -0.33 -1.07 16 22 C 0.06 0.69 7.29 -39.43 -0.29 0.40 16 23 F -0.12 -1.49 17.17 2.25 0.04 -1.45 16 24 C 0.12 1.29 7.31 -39.24 -0.29 1.00 16 25 F -0.12 -1.30 17.17 2.25 0.04 -1.26 16 26 C -0.17 -1.71 9.99 -39.51 -0.39 -2.10 16 27 C 0.17 2.11 7.24 -38.98 -0.28 1.83 16 28 F -0.11 -1.49 16.36 2.25 0.04 -1.45 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.17 6.12 -51.93 -0.32 0.85 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.22 7.92 -51.93 -0.41 0.81 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.39 9.45 7.71 -40.82 -0.31 9.14 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.06 0.87 5.70 -51.93 -0.30 0.57 16 37 H 0.08 1.36 8.03 -51.93 -0.42 0.95 16 38 H 0.17 1.76 6.09 -52.49 -0.32 1.44 16 39 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 339.41 15.07 5.11 5.11 Total: -1.00 -29.15 339.41 -6.77 -35.92 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -4.16 Total: 6.43 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -2.82 Total: 0.92 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: -0.08 Total: -51.43 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.07 Total: -8.99 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.11 Total: -4.16 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.15 -6.77 -35.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989384825.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.214 kcal (2) G-P(sol) polarization free energy of solvation -29.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds