Wall clock time and date at job start Tue Mar 31 2020 15:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 110.32350 * 2 1 4 4 C 1.54909 * 110.36610 * 122.22757 * 2 1 3 5 5 C 1.55159 * 101.58067 * 155.96042 * 4 2 1 6 6 H 1.08998 * 110.71572 * 82.86717 * 5 4 2 7 7 N 1.46499 * 110.72063 * 206.13946 * 5 4 2 8 8 C 1.36936 * 120.00069 * 199.97707 * 7 5 4 9 9 H 1.08007 * 119.99853 * 359.97438 * 8 7 5 10 10 C 1.38809 * 120.00287 * 179.97438 * 8 7 5 11 11 N 1.31618 * 119.99932 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00024 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47231 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46988 * 120.00202 * 12 10 8 15 15 H 1.48504 * 109.47103 * 240.00106 * 12 10 8 16 16 C 1.54328 * 102.94195 * 324.50003 * 5 4 2 17 17 N 1.47024 * 107.39933 * 22.11569 * 16 5 4 18 18 C 1.34778 * 125.64654 * 181.09989 * 17 16 5 19 19 O 1.21582 * 120.00112 * 174.84018 * 18 17 16 20 20 C 1.47575 * 119.99766 * 354.84126 * 18 17 16 21 21 C 1.39760 * 120.13143 * 315.76950 * 20 18 17 22 22 C 1.37918 * 119.87476 * 179.69666 * 21 20 18 23 23 F 1.35101 * 119.92969 * 180.29857 * 22 21 20 24 24 C 1.38951 * 120.14554 * 0.58457 * 22 21 20 25 25 F 1.35102 * 119.86473 * 179.69183 * 24 22 21 26 26 C 1.38448 * 120.26739 * 359.71827 * 24 22 21 27 27 C 1.38214 * 120.11702 * 359.97438 * 26 24 22 28 28 F 1.35105 * 120.06696 * 180.02562 * 27 26 24 29 29 H 1.08992 * 109.47182 * 297.76613 * 1 2 3 30 30 H 1.08999 * 109.46899 * 57.77147 * 1 2 3 31 31 H 1.08998 * 109.47073 * 177.76646 * 1 2 3 32 32 H 1.09000 * 111.00378 * 37.88950 * 4 2 1 33 33 H 1.09002 * 111.03967 * 274.05271 * 4 2 1 34 34 H 0.97002 * 119.99958 * 19.97415 * 7 5 4 35 35 H 0.96999 * 120.00301 * 179.97438 * 11 10 8 36 36 H 1.08999 * 109.87849 * 141.60739 * 16 5 4 37 37 H 1.08999 * 109.88390 * 262.61746 * 16 5 4 38 38 H 1.07996 * 120.06024 * 0.02562 * 21 20 18 39 39 H 1.07993 * 119.94159 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0692 -0.7745 1.2285 5 6 3.4789 -1.1964 0.7366 6 1 4.1942 -0.3856 0.8751 7 7 3.9273 -2.4085 1.4264 8 6 5.2596 -2.7229 1.4622 9 1 5.9799 -2.0773 0.9814 10 6 5.6846 -3.8711 2.1162 11 7 4.8069 -4.6581 2.7016 12 14 7.5020 -4.3003 2.1643 13 1 8.2752 -3.2621 1.4367 14 1 7.9595 -4.3591 3.5759 15 1 7.7161 -5.6206 1.5191 16 6 3.2524 -1.4745 -0.7644 17 7 2.0447 -0.7407 -1.1701 18 6 1.5011 -0.7435 -2.4034 19 8 0.4459 -0.1738 -2.6039 20 6 2.1868 -1.4381 -3.5103 21 6 3.5662 -1.2931 -3.6822 22 6 4.2025 -1.9496 -4.7147 23 9 5.5369 -1.8150 -4.8783 24 6 3.4735 -2.7444 -5.5908 25 9 4.1017 -3.3800 -6.6040 26 6 2.1058 -2.8872 -5.4299 27 6 1.4579 -2.2394 -4.3951 28 9 0.1233 -2.3798 -4.2387 29 1 -0.3633 0.4787 0.9093 30 1 -0.3633 0.5481 -0.8693 31 1 -0.3633 -1.0269 -0.0401 32 1 1.4523 -1.6475 1.4415 33 1 2.1379 -0.1250 2.1012 34 1 3.2804 -2.9884 1.8579 35 1 5.1037 -5.4607 3.1583 36 1 4.1096 -1.1245 -1.3396 37 1 3.1090 -2.5428 -0.9259 38 1 4.1335 -0.6724 -3.0046 39 1 1.5443 -3.5059 -6.1141 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989384825.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:41 Heat of formation + Delta-G solvation = -133.466336 kcal Electronic energy + Delta-G solvation = -28257.014612 eV Core-core repulsion = 23750.276950 eV Total energy + Delta-G solvation = -4506.737663 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -50.75176 -50.27341 -49.81454 -41.61098 -39.64342 -38.60693 -35.97252 -33.74178 -33.18980 -31.86945 -31.23782 -30.08208 -26.85123 -26.02719 -25.33972 -24.57530 -22.99621 -21.79694 -20.76096 -19.51619 -19.34323 -19.09184 -18.63150 -17.84698 -17.60298 -17.53152 -16.95667 -16.73896 -16.49110 -16.23878 -16.15846 -15.91998 -15.55784 -15.43042 -15.30417 -15.04887 -14.53728 -14.50962 -14.21969 -13.64072 -13.51476 -13.31507 -13.10397 -13.05691 -12.95080 -12.84471 -12.83247 -12.32037 -12.12523 -12.05243 -11.69246 -11.55748 -11.06358 -10.85009 -10.48951 -9.95666 -9.70093 -9.06245 -7.93945 -5.23702 -0.82922 -0.46743 1.27923 1.50214 1.51956 1.60363 1.67676 2.03165 2.30946 2.57057 2.67169 2.99070 3.03948 3.21725 3.37971 3.61148 3.74551 3.82266 3.87663 4.14534 4.18498 4.24090 4.28041 4.38034 4.45967 4.52410 4.53561 4.58770 4.73692 4.80142 4.87205 5.11381 5.15023 5.22690 5.29708 5.34157 5.51195 5.57142 6.26831 6.35550 6.90042 7.35144 8.06880 8.29494 9.29311 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.009544 B = 0.004660 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.967496 B = 6006.583554 C = 8132.594235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.137 3.863 3 H 0.099 0.901 4 C -0.126 4.126 5 C 0.165 3.835 6 H 0.079 0.921 7 N -0.725 5.725 8 C -0.238 4.238 9 H 0.085 0.915 10 C -0.070 4.070 11 N -0.968 5.968 12 Si 0.964 3.036 13 H -0.262 1.262 14 H -0.297 1.297 15 H -0.299 1.299 16 C 0.078 3.922 17 N -0.599 5.599 18 C 0.575 3.425 19 O -0.550 6.550 20 C -0.153 4.153 21 C -0.058 4.058 22 C 0.055 3.945 23 F -0.123 7.123 24 C 0.122 3.878 25 F -0.115 7.115 26 C -0.151 4.151 27 C 0.162 3.838 28 F -0.119 7.119 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.375 0.625 35 H 0.250 0.750 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.176 0.824 39 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.276 8.519 -14.634 17.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.035 3.965 3 H 0.117 0.883 4 C -0.165 4.165 5 C 0.055 3.945 6 H 0.097 0.903 7 N -0.364 5.364 8 C -0.370 4.370 9 H 0.102 0.898 10 C -0.263 4.263 11 N -0.619 5.619 12 Si 0.794 3.206 13 H -0.186 1.186 14 H -0.224 1.224 15 H -0.226 1.226 16 C -0.047 4.047 17 N -0.332 5.332 18 C 0.363 3.637 19 O -0.430 6.430 20 C -0.157 4.157 21 C -0.077 4.077 22 C 0.034 3.966 23 F -0.102 7.102 24 C 0.101 3.899 25 F -0.093 7.093 26 C -0.170 4.170 27 C 0.141 3.859 28 F -0.098 7.098 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.208 0.792 35 H 0.059 0.941 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.193 0.807 39 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -5.629 8.816 -14.841 18.157 hybrid contribution 0.878 -1.150 0.175 1.457 sum -4.751 7.667 -14.666 17.217 Atomic orbital electron populations 1.22056 0.93649 1.01846 1.03425 1.22143 0.95283 0.95925 0.83111 0.88285 1.23076 0.95579 1.00418 0.97389 1.21401 0.94964 0.89453 0.88702 0.90324 1.42548 1.05028 1.25330 1.63478 1.19683 0.85241 1.04729 1.27309 0.89760 1.25485 1.01178 0.98242 1.01360 1.69808 1.34135 1.15925 1.41985 0.85204 0.80900 0.77626 0.76833 1.18607 1.22423 1.22627 1.23238 0.85943 0.95873 0.99659 1.48615 1.28338 1.47562 1.08660 1.17596 0.84041 0.80366 0.81709 1.90767 1.22426 1.46495 1.83278 1.19844 0.94140 1.02998 0.98730 1.21224 0.92289 0.97994 0.96237 1.17477 0.78595 1.02174 0.98315 1.91579 1.29041 1.94512 1.95046 1.17430 0.90441 0.94876 0.87106 1.91593 1.82033 1.79300 1.56403 1.21039 0.92388 1.03536 1.00024 1.17304 0.77841 0.96234 0.94547 1.91594 1.29554 1.93765 1.94841 0.89789 0.91318 0.94260 0.91714 0.88007 0.79241 0.94116 0.90231 0.92802 0.80712 0.78726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 8.53 71.98 0.61 -3.19 16 2 C 0.14 3.44 3.79 45.41 0.17 3.61 16 3 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 4 C -0.13 -3.45 6.11 31.99 0.20 -3.25 16 5 C 0.17 5.43 3.59 46.18 0.17 5.60 16 6 H 0.08 2.46 8.12 -2.39 -0.02 2.44 16 7 N -0.72 -32.38 5.17 -317.32 -1.64 -34.02 16 8 C -0.24 -11.89 9.98 84.03 0.84 -11.05 16 9 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 10 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 11 N -0.97 -56.36 13.06 21.65 0.28 -56.08 16 12 Si 0.96 43.58 29.55 68.60 2.03 45.61 16 13 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 14 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 15 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 16 C 0.08 2.35 5.64 86.73 0.49 2.84 16 17 N -0.60 -16.72 3.25 -791.06 -2.57 -19.30 16 18 C 0.57 16.92 7.06 86.71 0.61 17.53 16 19 O -0.55 -18.67 14.07 -3.98 -0.06 -18.72 16 20 C -0.15 -3.85 5.40 -20.05 -0.11 -3.96 16 21 C -0.06 -1.28 8.40 22.56 0.19 -1.09 16 22 C 0.05 1.19 7.29 22.36 0.16 1.35 16 23 F -0.12 -2.90 17.17 44.97 0.77 -2.13 16 24 C 0.12 2.42 7.31 22.49 0.16 2.58 16 25 F -0.12 -2.33 17.17 44.97 0.77 -1.56 16 26 C -0.15 -2.68 9.99 22.31 0.22 -2.46 16 27 C 0.16 3.77 7.24 22.66 0.16 3.93 16 28 F -0.12 -3.18 16.36 44.97 0.74 -2.44 16 29 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.07 1.92 6.12 -2.39 -0.01 1.91 16 31 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.06 1.97 7.92 -2.39 -0.02 1.96 16 33 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.38 18.52 7.71 -92.71 -0.72 17.81 16 35 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 36 H 0.08 2.09 5.70 -2.39 -0.01 2.07 16 37 H 0.05 1.89 8.03 -2.39 -0.02 1.87 16 38 H 0.18 3.38 6.09 -2.91 -0.02 3.37 16 39 H 0.20 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -62.46 339.41 5.08 -57.39 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 0.41 Total: 22.10 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 4.35 Total: 9.15 kcal Atomic # 7 Polarization: -105.46 SS G_CDS: -3.93 Total: -109.40 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.06 Total: -18.72 kcal Atomic # 9 Polarization: -8.41 SS G_CDS: 2.28 Total: -6.13 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -62.46 5.08 -57.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989384825.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.080 kcal (2) G-P(sol) polarization free energy of solvation -62.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds