Wall clock time and date at job start Tue Mar 31 2020 15:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09006 * 109.99546 * 2 1 4 4 C 1.54322 * 109.88124 * 121.09611 * 2 1 3 5 5 C 1.55157 * 102.94117 * 141.61057 * 4 2 1 6 6 H 1.08995 * 111.00171 * 206.42489 * 5 4 2 7 7 N 1.46507 * 111.00153 * 82.61131 * 5 4 2 8 8 C 1.36938 * 119.99744 * 154.99829 * 7 5 4 9 9 H 1.07996 * 119.99873 * 0.02562 * 8 7 5 10 10 C 1.38814 * 119.99799 * 179.97438 * 8 7 5 11 11 N 1.31617 * 120.00051 * 180.02562 * 10 8 7 12 12 Si 1.86795 * 120.00034 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47091 * 89.99774 * 12 10 8 14 14 H 1.48497 * 109.47320 * 209.99867 * 12 10 8 15 15 H 1.48498 * 109.47307 * 330.00107 * 12 10 8 16 16 C 1.55131 * 101.48450 * 324.33481 * 5 4 2 17 17 N 1.47015 * 109.88211 * 238.90883 * 2 1 3 18 18 C 1.34780 * 125.65324 * 61.60875 * 17 2 1 19 19 O 1.21580 * 119.99914 * 183.26492 * 18 17 2 20 20 C 1.47571 * 119.99922 * 3.25546 * 18 17 2 21 21 C 1.39758 * 120.12862 * 3.76627 * 20 18 17 22 22 C 1.37917 * 119.87434 * 179.73827 * 21 20 18 23 23 F 1.35104 * 119.93010 * 180.23257 * 22 21 20 24 24 C 1.38948 * 120.14512 * 0.51743 * 22 21 20 25 25 F 1.35099 * 119.86507 * 179.74029 * 24 22 21 26 26 C 1.38448 * 120.26756 * 359.75993 * 24 22 21 27 27 C 1.38214 * 120.12110 * 359.97438 * 26 24 22 28 28 F 1.35099 * 120.07593 * 180.02562 * 27 26 24 29 29 H 1.08992 * 109.47275 * 197.41182 * 1 2 3 30 30 H 1.08996 * 109.47268 * 317.41783 * 1 2 3 31 31 H 1.08998 * 109.46593 * 77.41216 * 1 2 3 32 32 H 1.08997 * 110.72288 * 259.97391 * 4 2 1 33 33 H 1.08998 * 110.72140 * 23.24834 * 4 2 1 34 34 H 0.96997 * 120.00248 * 335.00031 * 7 5 4 35 35 H 0.96998 * 120.00457 * 180.02562 * 11 10 8 36 36 H 1.08998 * 110.49654 * 278.44689 * 16 5 4 37 37 H 1.08998 * 110.33939 * 156.05957 * 16 5 4 38 38 H 1.07995 * 120.06209 * 359.97438 * 21 20 18 39 39 H 1.07998 * 119.93957 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 1.2427 5 6 3.2876 -1.5142 0.6924 6 1 3.4852 -2.4110 1.2796 7 7 4.4677 -0.6470 0.6503 8 6 5.7219 -1.1945 0.6997 9 1 5.8411 -2.2656 0.7694 10 6 6.8400 -0.3728 0.6593 11 7 8.0454 -0.8990 0.7064 12 14 6.6337 1.4798 0.5381 13 1 6.5636 2.0603 1.9031 14 1 7.7917 2.0604 -0.1878 15 1 5.3817 1.7914 -0.1971 16 6 2.8099 -1.8824 -0.7369 17 7 2.0300 -0.7139 -1.1839 18 6 1.8075 -0.3619 -2.4657 19 8 2.2220 -1.0620 -3.3692 20 6 1.0606 0.8733 -2.7726 21 6 0.6510 1.7205 -1.7393 22 6 -0.0421 2.8763 -2.0324 23 9 -0.4344 3.6984 -1.0347 24 6 -0.3429 3.1941 -3.3512 25 9 -1.0266 4.3250 -3.6315 26 6 0.0550 2.3562 -4.3791 27 6 0.7548 1.1979 -4.0983 28 9 1.1430 0.3812 -5.1020 29 1 -0.3633 -0.9805 0.3075 30 1 -0.3633 0.7566 0.6953 31 1 -0.3632 0.2240 -1.0030 32 1 2.3529 -0.0461 2.0201 33 1 1.3052 -1.4459 1.6182 34 1 4.3606 0.3150 0.5874 35 1 8.8267 -0.3249 0.6785 36 1 2.1802 -2.7717 -0.7116 37 1 3.6656 -2.0411 -1.3932 38 1 0.8801 1.4725 -0.7135 39 1 -0.1820 2.6082 -5.4022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989384827.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:48 Heat of formation + Delta-G solvation = -75.903536 kcal Electronic energy + Delta-G solvation = -28808.982482 eV Core-core repulsion = 24304.740930 eV Total energy + Delta-G solvation = -4504.241552 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.93420 -49.21511 -48.98532 -40.95135 -38.55263 -37.64002 -34.72923 -32.62237 -31.64011 -31.01904 -30.41740 -29.01604 -26.17977 -24.56392 -23.92195 -23.09917 -22.32673 -20.47730 -19.75467 -18.61324 -18.39411 -17.92521 -17.60234 -16.92443 -16.82519 -16.08290 -15.98193 -15.72378 -15.42602 -15.26759 -15.04624 -14.87121 -14.63590 -14.13152 -13.86851 -13.73506 -13.44340 -13.22760 -12.81799 -12.68241 -12.61031 -12.31219 -12.12491 -11.98659 -11.86100 -11.39745 -11.19957 -10.91786 -10.77629 -10.57602 -10.21253 -9.94561 -9.69154 -9.52475 -9.15509 -9.06418 -8.52802 -7.41678 -5.87125 -3.24943 -0.00469 0.36729 2.29936 2.86579 3.14810 3.23277 3.29719 3.30832 3.38970 3.52654 3.87993 3.90357 4.10396 4.38234 4.49422 4.52469 4.68297 4.78934 4.99368 5.05397 5.08694 5.18179 5.20169 5.29801 5.34330 5.44132 5.51789 5.61187 5.62250 5.82575 5.97165 6.01643 6.10520 6.13984 6.27069 6.46043 6.58105 7.53902 7.86261 8.13355 8.31187 9.07330 9.79643 9.96704 11.30592 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.013343 B = 0.004187 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.961862 B = 6685.831793 C = 6863.621399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.108 3.892 3 H 0.086 0.914 4 C -0.139 4.139 5 C 0.174 3.826 6 H 0.088 0.912 7 N -0.735 5.735 8 C -0.253 4.253 9 H 0.094 0.906 10 C 0.012 3.988 11 N -0.928 5.928 12 Si 0.881 3.119 13 H -0.282 1.282 14 H -0.290 1.290 15 H -0.279 1.279 16 C 0.079 3.921 17 N -0.592 5.592 18 C 0.571 3.429 19 O -0.519 6.519 20 C -0.151 4.151 21 C -0.102 4.102 22 C 0.044 3.956 23 F -0.121 7.121 24 C 0.123 3.877 25 F -0.117 7.117 26 C -0.181 4.181 27 C 0.184 3.816 28 F -0.099 7.099 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.361 0.639 35 H 0.261 0.739 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.203 0.797 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.442 6.444 -3.787 22.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.004 3.996 3 H 0.103 0.897 4 C -0.178 4.178 5 C 0.062 3.938 6 H 0.106 0.894 7 N -0.376 5.376 8 C -0.382 4.382 9 H 0.112 0.888 10 C -0.185 4.185 11 N -0.574 5.574 12 Si 0.711 3.289 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.205 1.205 16 C -0.046 4.046 17 N -0.324 5.324 18 C 0.359 3.641 19 O -0.396 6.396 20 C -0.156 4.156 21 C -0.120 4.120 22 C 0.023 3.977 23 F -0.099 7.099 24 C 0.102 3.898 25 F -0.095 7.095 26 C -0.201 4.201 27 C 0.163 3.837 28 F -0.077 7.077 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.194 0.806 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.219 0.781 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -20.997 5.956 -4.334 22.252 hybrid contribution -0.189 1.813 -0.354 1.857 sum -21.187 7.769 -4.688 23.048 Atomic orbital electron populations 1.22833 0.94703 1.03841 1.02886 1.22065 0.93861 0.96667 0.86967 0.89697 1.23169 0.98871 1.00244 0.95540 1.21379 0.85913 0.94576 0.91953 0.89409 1.42674 1.01919 1.04130 1.88835 1.19063 0.81166 0.94216 1.43789 0.88834 1.24660 0.95085 0.97312 1.01433 1.69686 0.96949 1.34275 1.56519 0.86612 0.77114 0.87350 0.77787 1.20883 1.21584 1.20486 1.23441 0.95028 0.86198 0.99935 1.48310 1.51610 1.28811 1.03715 1.17268 0.80389 0.84279 0.82154 1.90867 1.51261 1.53041 1.44478 1.20024 1.04768 0.98803 0.91981 1.23114 0.93993 0.90626 1.04292 1.17439 1.04376 0.92182 0.83672 1.91571 1.89036 1.70526 1.58765 1.17488 0.95824 0.84761 0.91716 1.91579 1.76425 1.47313 1.94173 1.20887 1.03641 0.94543 1.00989 1.17244 0.94175 0.88204 0.84098 1.91660 1.87805 1.70341 1.57914 0.90903 0.90579 0.91378 0.89324 0.89692 0.80573 0.92871 0.91887 0.89304 0.78124 0.81698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.60 7.78 37.16 0.29 -1.31 16 2 C 0.11 1.26 2.69 -66.95 -0.18 1.08 16 3 H 0.09 0.99 6.12 -51.93 -0.32 0.67 16 4 C -0.14 -1.64 6.07 -24.90 -0.15 -1.79 16 5 C 0.17 2.84 3.72 -65.66 -0.24 2.59 16 6 H 0.09 1.41 8.09 -51.93 -0.42 0.99 16 7 N -0.73 -15.76 5.05 -51.23 -0.26 -16.02 16 8 C -0.25 -6.71 10.44 -15.06 -0.16 -6.87 16 9 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 10 C 0.01 0.33 5.50 -17.43 -0.10 0.24 16 11 N -0.93 -28.39 13.97 55.49 0.78 -27.61 16 12 Si 0.88 21.47 27.74 -169.99 -4.71 16.76 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 14 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 15 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 16 C 0.08 1.29 6.61 -2.41 -0.02 1.27 16 17 N -0.59 -8.98 3.06 -168.25 -0.52 -9.49 16 18 C 0.57 9.50 7.57 -12.45 -0.09 9.41 16 19 O -0.52 -10.53 15.62 5.30 0.08 -10.45 16 20 C -0.15 -2.02 5.34 -104.91 -0.56 -2.58 16 21 C -0.10 -1.13 6.43 -39.13 -0.25 -1.38 16 22 C 0.04 0.46 7.29 -39.44 -0.29 0.17 16 23 F -0.12 -1.30 17.17 2.25 0.04 -1.26 16 24 C 0.12 1.24 7.31 -39.24 -0.29 0.96 16 25 F -0.12 -1.19 17.17 2.25 0.04 -1.15 16 26 C -0.18 -1.75 9.99 -39.51 -0.39 -2.14 16 27 C 0.18 2.30 7.28 -38.98 -0.28 2.01 16 28 F -0.10 -1.45 15.55 2.25 0.04 -1.41 16 29 H 0.07 0.59 7.70 -51.93 -0.40 0.19 16 30 H 0.08 0.51 8.11 -51.93 -0.42 0.09 16 31 H 0.07 0.63 4.78 -51.93 -0.25 0.38 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.08 0.78 7.57 -51.93 -0.39 0.39 16 34 H 0.36 7.71 5.73 -40.82 -0.23 7.48 16 35 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.09 1.79 8.07 -51.93 -0.42 1.37 16 38 H 0.20 2.03 2.01 -58.10 -0.12 1.92 16 39 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 328.98 15.07 4.96 4.96 Total: -1.00 -32.39 328.98 -6.10 -38.50 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -3.83 Total: 5.54 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -2.71 Total: 1.66 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: 0.00 Total: -53.13 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.08 Total: -10.45 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.11 Total: -3.83 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.71 Total: 16.76 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.39 -6.10 -38.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989384827.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.406 kcal (2) G-P(sol) polarization free energy of solvation -32.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds