Wall clock time and date at job start Tue Mar 31 2020 15:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09006 * 109.99546 * 2 1 4 4 C 1.54322 * 109.88124 * 121.09611 * 2 1 3 5 5 C 1.55157 * 102.94117 * 141.61057 * 4 2 1 6 6 H 1.08995 * 111.00171 * 206.42489 * 5 4 2 7 7 N 1.46507 * 111.00153 * 82.61131 * 5 4 2 8 8 C 1.36938 * 119.99744 * 154.99829 * 7 5 4 9 9 H 1.07996 * 119.99873 * 0.02562 * 8 7 5 10 10 C 1.38814 * 119.99799 * 179.97438 * 8 7 5 11 11 N 1.31617 * 120.00051 * 180.02562 * 10 8 7 12 12 Si 1.86795 * 120.00034 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47091 * 89.99774 * 12 10 8 14 14 H 1.48497 * 109.47320 * 209.99867 * 12 10 8 15 15 H 1.48498 * 109.47307 * 330.00107 * 12 10 8 16 16 C 1.55131 * 101.48450 * 324.33481 * 5 4 2 17 17 N 1.47015 * 109.88211 * 238.90883 * 2 1 3 18 18 C 1.34780 * 125.65324 * 61.60875 * 17 2 1 19 19 O 1.21580 * 119.99914 * 183.26492 * 18 17 2 20 20 C 1.47571 * 119.99922 * 3.25546 * 18 17 2 21 21 C 1.39758 * 120.12862 * 3.76627 * 20 18 17 22 22 C 1.37917 * 119.87434 * 179.73827 * 21 20 18 23 23 F 1.35104 * 119.93010 * 180.23257 * 22 21 20 24 24 C 1.38948 * 120.14512 * 0.51743 * 22 21 20 25 25 F 1.35099 * 119.86507 * 179.74029 * 24 22 21 26 26 C 1.38448 * 120.26756 * 359.75993 * 24 22 21 27 27 C 1.38214 * 120.12110 * 359.97438 * 26 24 22 28 28 F 1.35099 * 120.07593 * 180.02562 * 27 26 24 29 29 H 1.08992 * 109.47275 * 197.41182 * 1 2 3 30 30 H 1.08996 * 109.47268 * 317.41783 * 1 2 3 31 31 H 1.08998 * 109.46593 * 77.41216 * 1 2 3 32 32 H 1.08997 * 110.72288 * 259.97391 * 4 2 1 33 33 H 1.08998 * 110.72140 * 23.24834 * 4 2 1 34 34 H 0.96997 * 120.00248 * 335.00031 * 7 5 4 35 35 H 0.96998 * 120.00457 * 180.02562 * 11 10 8 36 36 H 1.08998 * 110.49654 * 278.44689 * 16 5 4 37 37 H 1.08998 * 110.33939 * 156.05957 * 16 5 4 38 38 H 1.07995 * 120.06209 * 359.97438 * 21 20 18 39 39 H 1.07998 * 119.93957 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 1.2427 5 6 3.2876 -1.5142 0.6924 6 1 3.4852 -2.4110 1.2796 7 7 4.4677 -0.6470 0.6503 8 6 5.7219 -1.1945 0.6997 9 1 5.8411 -2.2656 0.7694 10 6 6.8400 -0.3728 0.6593 11 7 8.0454 -0.8990 0.7064 12 14 6.6337 1.4798 0.5381 13 1 6.5636 2.0603 1.9031 14 1 7.7917 2.0604 -0.1878 15 1 5.3817 1.7914 -0.1971 16 6 2.8099 -1.8824 -0.7369 17 7 2.0300 -0.7139 -1.1839 18 6 1.8075 -0.3619 -2.4657 19 8 2.2220 -1.0620 -3.3692 20 6 1.0606 0.8733 -2.7726 21 6 0.6510 1.7205 -1.7393 22 6 -0.0421 2.8763 -2.0324 23 9 -0.4344 3.6984 -1.0347 24 6 -0.3429 3.1941 -3.3512 25 9 -1.0266 4.3250 -3.6315 26 6 0.0550 2.3562 -4.3791 27 6 0.7548 1.1979 -4.0983 28 9 1.1430 0.3812 -5.1020 29 1 -0.3633 -0.9805 0.3075 30 1 -0.3633 0.7566 0.6953 31 1 -0.3632 0.2240 -1.0030 32 1 2.3529 -0.0461 2.0201 33 1 1.3052 -1.4459 1.6182 34 1 4.3606 0.3150 0.5874 35 1 8.8267 -0.3249 0.6785 36 1 2.1802 -2.7717 -0.7116 37 1 3.6656 -2.0411 -1.3932 38 1 0.8801 1.4725 -0.7135 39 1 -0.1820 2.6082 -5.4022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989384827.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:47 Heat of formation + Delta-G solvation = -97.021996 kcal Electronic energy + Delta-G solvation = -28809.898247 eV Core-core repulsion = 24304.740930 eV Total energy + Delta-G solvation = -4505.157317 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.75265 -50.22873 -49.80577 -42.04599 -39.56316 -38.90469 -36.29256 -34.08810 -32.96117 -32.33530 -31.31157 -30.38940 -27.22858 -25.73120 -25.27252 -24.34562 -23.35431 -21.73750 -20.89757 -19.83216 -19.52576 -19.28504 -18.65378 -17.88556 -17.73810 -17.30309 -17.02709 -16.77775 -16.44046 -16.30377 -16.15930 -16.09772 -15.84273 -15.57925 -15.05317 -14.77434 -14.66930 -14.51667 -14.25219 -13.73922 -13.64337 -13.50405 -13.40809 -13.05723 -12.90368 -12.76229 -12.50355 -12.35613 -12.12476 -11.93966 -11.76048 -11.59582 -11.22968 -11.05909 -10.37401 -10.03744 -9.78281 -9.28988 -8.03805 -5.37463 -0.92663 -0.46940 1.30369 1.33292 1.38271 1.44326 1.73656 2.13452 2.30279 2.46014 2.64574 2.97435 3.03897 3.15883 3.28346 3.45237 3.56935 3.65499 3.80436 3.93651 4.11031 4.17243 4.22310 4.27320 4.42812 4.49919 4.57999 4.63850 4.67175 4.79727 4.94664 4.98249 5.10736 5.17797 5.28184 5.29675 5.33870 5.77687 6.20287 6.35832 6.90148 7.06515 7.81729 7.98451 9.17605 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.013343 B = 0.004187 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.961862 B = 6685.831793 C = 6863.621399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.099 3.901 3 H 0.092 0.908 4 C -0.122 4.122 5 C 0.162 3.838 6 H 0.089 0.911 7 N -0.738 5.738 8 C -0.229 4.229 9 H 0.062 0.938 10 C -0.061 4.061 11 N -0.983 5.983 12 Si 0.948 3.052 13 H -0.268 1.268 14 H -0.304 1.304 15 H -0.257 1.257 16 C 0.084 3.916 17 N -0.593 5.593 18 C 0.562 3.438 19 O -0.572 6.572 20 C -0.166 4.166 21 C -0.090 4.090 22 C 0.050 3.950 23 F -0.118 7.118 24 C 0.131 3.869 25 F -0.113 7.113 26 C -0.161 4.161 27 C 0.168 3.832 28 F -0.118 7.118 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.120 0.880 34 H 0.365 0.635 35 H 0.257 0.743 36 H 0.086 0.914 37 H 0.040 0.960 38 H 0.214 0.786 39 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.960 8.866 -2.763 26.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.003 4.003 3 H 0.109 0.891 4 C -0.160 4.160 5 C 0.052 3.948 6 H 0.107 0.893 7 N -0.380 5.380 8 C -0.360 4.360 9 H 0.080 0.920 10 C -0.253 4.253 11 N -0.633 5.633 12 Si 0.776 3.224 13 H -0.194 1.194 14 H -0.231 1.231 15 H -0.182 1.182 16 C -0.041 4.041 17 N -0.324 5.324 18 C 0.352 3.648 19 O -0.453 6.453 20 C -0.171 4.171 21 C -0.107 4.107 22 C 0.029 3.971 23 F -0.096 7.096 24 C 0.111 3.889 25 F -0.091 7.091 26 C -0.180 4.180 27 C 0.147 3.853 28 F -0.096 7.096 29 H 0.102 0.898 30 H 0.124 0.876 31 H 0.080 0.920 32 H 0.119 0.881 33 H 0.139 0.861 34 H 0.198 0.802 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.058 0.942 38 H 0.230 0.770 39 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -24.613 8.391 -3.270 26.209 hybrid contribution 0.814 0.970 -0.678 1.436 sum -23.799 9.361 -3.948 25.877 Atomic orbital electron populations 1.22794 0.91748 1.05639 1.03445 1.22407 0.96194 0.96461 0.85201 0.89082 1.23149 0.96769 1.00534 0.95589 1.21658 0.86145 0.94886 0.92140 0.89305 1.42652 1.01608 1.04818 1.88904 1.19066 0.83399 0.92948 1.40631 0.91960 1.25452 0.94775 1.02305 1.02762 1.69872 0.97905 1.35906 1.59638 0.85522 0.77175 0.81389 0.78358 1.19370 1.23136 1.18234 1.23209 0.94210 0.88054 0.98654 1.48435 1.50950 1.28544 1.04510 1.17811 0.80099 0.84924 0.81967 1.90829 1.53606 1.54900 1.46007 1.19800 1.05998 0.98204 0.93078 1.23058 0.93443 0.90153 1.04067 1.17387 1.03979 0.91861 0.83841 1.91586 1.88945 1.70372 1.58724 1.17494 0.95225 0.84613 0.91607 1.91599 1.76261 1.47127 1.94144 1.21022 1.01793 0.92845 1.02347 1.17491 0.95213 0.89034 0.83542 1.91614 1.88245 1.71137 1.58579 0.89804 0.87561 0.91953 0.88122 0.86129 0.80207 0.93462 0.89572 0.94165 0.77021 0.78931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.29 7.78 71.98 0.56 -1.73 16 2 C 0.10 1.97 2.69 45.34 0.12 2.10 16 3 H 0.09 1.74 6.12 -2.38 -0.01 1.73 16 4 C -0.12 -2.38 6.07 31.78 0.19 -2.19 16 5 C 0.16 5.07 3.72 46.46 0.17 5.24 16 6 H 0.09 2.78 8.09 -2.39 -0.02 2.76 16 7 N -0.74 -31.18 5.05 -316.00 -1.60 -32.78 16 8 C -0.23 -12.46 10.44 84.03 0.88 -11.58 16 9 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 10 C -0.06 -3.54 5.50 84.86 0.47 -3.08 16 11 N -0.98 -62.52 13.97 21.65 0.30 -62.21 16 12 Si 0.95 44.58 27.74 68.60 1.90 46.48 16 13 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 14 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 15 H -0.26 -11.00 6.52 99.48 0.65 -10.35 16 16 C 0.08 2.74 6.61 86.93 0.57 3.32 16 17 N -0.59 -17.32 3.06 -804.48 -2.46 -19.79 16 18 C 0.56 18.69 7.57 86.71 0.66 19.35 16 19 O -0.57 -24.19 15.62 -3.97 -0.06 -24.26 16 20 C -0.17 -4.23 5.34 -20.05 -0.11 -4.33 16 21 C -0.09 -1.70 6.43 22.56 0.15 -1.56 16 22 C 0.05 0.87 7.29 22.36 0.16 1.04 16 23 F -0.12 -2.07 17.17 44.97 0.77 -1.30 16 24 C 0.13 2.21 7.31 22.49 0.16 2.37 16 25 F -0.11 -1.91 17.17 44.97 0.77 -1.13 16 26 C -0.16 -2.67 9.99 22.31 0.22 -2.44 16 27 C 0.17 4.01 7.28 22.66 0.16 4.18 16 28 F -0.12 -3.46 15.55 44.97 0.70 -2.76 16 29 H 0.08 0.94 7.70 -2.39 -0.02 0.92 16 30 H 0.11 0.79 8.11 -2.39 -0.02 0.77 16 31 H 0.06 0.93 4.78 -2.39 -0.01 0.91 16 32 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.12 1.57 7.57 -2.39 -0.02 1.56 16 34 H 0.36 14.86 5.73 -92.71 -0.53 14.33 16 35 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 36 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.04 1.70 8.07 -2.39 -0.02 1.68 16 38 H 0.21 3.46 2.01 -8.19 -0.02 3.44 16 39 H 0.19 2.06 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -75.23 328.98 5.24 -69.99 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.54 Total: 17.09 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 4.38 Total: 10.68 kcal Atomic # 7 Polarization: -111.02 SS G_CDS: -3.76 Total: -114.78 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.06 Total: -24.26 kcal Atomic # 9 Polarization: -7.44 SS G_CDS: 2.24 Total: -5.20 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.90 Total: 46.48 kcal Total: -75.23 5.24 -69.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989384827.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.035 kcal (2) G-P(sol) polarization free energy of solvation -75.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds