Wall clock time and date at job start Tue Mar 31 2020 15:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.99440 * 2 1 4 4 C 1.54322 * 109.88292 * 121.09329 * 2 1 3 5 5 C 1.55155 * 103.09902 * 141.70002 * 4 2 1 6 6 H 1.09005 * 111.00419 * 82.48883 * 5 4 2 7 7 N 1.46498 * 111.00413 * 206.29497 * 5 4 2 8 8 C 1.36942 * 120.00237 * 204.99873 * 7 5 4 9 9 H 1.08003 * 119.99813 * 0.02562 * 8 7 5 10 10 C 1.38806 * 120.00269 * 180.02562 * 8 7 5 11 11 N 1.31619 * 120.00186 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00126 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47134 * 60.00153 * 12 10 8 14 14 H 1.48503 * 109.47131 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47043 * 300.00161 * 12 10 8 16 16 C 1.54905 * 101.58624 * 324.41102 * 5 4 2 17 17 N 1.47429 * 104.82891 * 37.00864 * 16 5 4 18 18 C 1.34771 * 125.64813 * 155.93038 * 17 16 5 19 19 O 1.21568 * 120.00384 * 353.74351 * 18 17 16 20 20 C 1.47740 * 120.00236 * 173.74513 * 18 17 16 21 21 C 1.39630 * 120.09572 * 16.93753 * 20 18 17 22 22 C 1.38076 * 119.89454 * 179.72383 * 21 20 18 23 23 F 1.35098 * 119.95194 * 180.27472 * 22 21 20 24 24 C 1.38789 * 120.09763 * 0.58141 * 22 21 20 25 25 F 1.35104 * 119.89604 * 179.72270 * 24 22 21 26 26 C 1.38781 * 120.20622 * 359.69143 * 24 22 21 27 27 F 1.35101 * 119.95130 * 180.02562 * 26 24 22 28 28 C 1.38074 * 120.10046 * 0.02562 * 26 24 22 29 29 H 1.08998 * 109.47413 * 316.39273 * 1 2 3 30 30 H 1.08994 * 109.47403 * 76.39625 * 1 2 3 31 31 H 1.09005 * 109.46676 * 196.39929 * 1 2 3 32 32 H 1.08998 * 110.72242 * 23.25292 * 4 2 1 33 33 H 1.09002 * 110.72588 * 260.15247 * 4 2 1 34 34 H 0.97001 * 120.00124 * 25.00520 * 7 5 4 35 35 H 0.97000 * 120.00395 * 179.97438 * 11 10 8 36 36 H 1.08996 * 110.37219 * 155.84442 * 16 5 4 37 37 H 1.09000 * 110.36728 * 278.06476 * 16 5 4 38 38 H 1.07997 * 120.05465 * 0.02562 * 21 20 18 39 39 H 1.07993 * 120.05203 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0244 0.0000 4 6 2.0549 -0.7495 1.2427 5 6 3.2897 -1.5140 0.6968 6 1 4.1669 -0.8676 0.6652 7 7 3.5556 -2.7166 1.4900 8 6 4.8196 -3.2416 1.5350 9 1 5.6205 -2.7689 0.9860 10 6 5.0714 -4.3814 2.2861 11 7 4.0952 -4.9579 2.9547 12 14 6.7957 -5.0972 2.3480 13 1 7.7313 -4.0871 2.9043 14 1 6.7996 -6.3050 3.2119 15 1 7.2269 -5.4689 0.9764 16 6 2.8202 -1.8831 -0.7325 17 7 2.0353 -0.7197 -1.1840 18 6 1.8147 -0.3711 -2.4671 19 8 2.3729 -0.9715 -3.3647 20 6 0.8945 0.7408 -2.7828 21 6 0.5299 1.6515 -1.7892 22 6 -0.3259 2.6925 -2.0902 23 9 -0.6750 3.5775 -1.1311 24 6 -0.8330 2.8272 -3.3751 25 9 -1.6745 3.8439 -3.6638 26 6 -0.4779 1.9210 -4.3645 27 9 -0.9741 2.0573 -5.6136 28 6 0.3819 0.8804 -4.0741 29 1 -0.3634 0.7441 0.7088 30 1 -0.3634 0.2417 -0.9988 31 1 -0.3633 -0.9859 0.2902 32 1 1.3052 -1.4459 1.6182 33 1 2.3500 -0.0460 2.0213 34 1 2.8363 -3.1411 1.9833 35 1 4.2711 -5.7547 3.4794 36 1 3.6789 -2.0379 -1.3858 37 1 2.1969 -2.7769 -0.7081 38 1 0.9205 1.5448 -0.7880 39 1 0.6580 0.1759 -4.8447 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989474768.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:09 Heat of formation + Delta-G solvation = -85.521125 kcal Electronic energy + Delta-G solvation = -27921.188534 eV Core-core repulsion = 23416.529932 eV Total energy + Delta-G solvation = -4504.658602 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.16530 -49.55233 -48.84472 -41.07303 -38.58104 -37.66755 -34.71157 -32.48869 -31.65635 -31.06454 -30.61923 -28.42788 -26.14164 -24.64517 -23.85911 -23.48798 -22.11473 -20.65493 -19.81191 -18.58377 -18.30702 -18.20876 -17.39324 -17.19576 -16.76422 -16.11471 -15.91074 -15.84166 -15.64650 -15.33169 -15.16994 -14.79318 -14.70357 -14.47121 -13.81473 -13.61465 -13.48353 -13.17596 -12.94687 -12.76248 -12.56979 -12.45535 -12.26972 -11.94601 -11.52353 -11.26120 -11.18248 -10.85875 -10.79065 -10.43163 -10.17128 -10.11381 -9.83806 -9.42622 -9.21799 -9.09911 -8.60276 -7.17772 -5.91395 -3.22922 -0.09018 0.28726 2.18256 2.68576 2.93104 3.12947 3.37625 3.42844 3.43168 3.66701 3.71461 3.88213 3.95877 4.33782 4.45517 4.56962 4.74890 4.76369 4.86027 5.01399 5.20965 5.21109 5.31318 5.37825 5.40411 5.50698 5.54200 5.65052 5.80171 5.93365 6.01970 6.06166 6.12638 6.21408 6.32843 6.46539 6.72945 7.46379 7.58198 8.00369 8.25805 9.38076 9.89459 10.24075 11.30268 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.026701 B = 0.002727 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.397809 B =10266.164276 C =10984.730660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.115 3.885 3 H 0.086 0.914 4 C -0.137 4.137 5 C 0.172 3.828 6 H 0.070 0.930 7 N -0.709 5.709 8 C -0.253 4.253 9 H 0.073 0.927 10 C -0.006 4.006 11 N -0.929 5.929 12 Si 0.909 3.091 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.284 1.284 16 C 0.081 3.919 17 N -0.598 5.598 18 C 0.571 3.429 19 O -0.528 6.528 20 C -0.085 4.085 21 C -0.122 4.122 22 C 0.082 3.918 23 F -0.115 7.115 24 C 0.055 3.945 25 F -0.114 7.114 26 C 0.085 3.915 27 F -0.116 7.116 28 C -0.076 4.076 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.388 0.612 35 H 0.258 0.742 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.191 0.809 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.447 16.118 -9.141 21.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.012 3.988 3 H 0.104 0.896 4 C -0.175 4.175 5 C 0.060 3.940 6 H 0.088 0.912 7 N -0.348 5.348 8 C -0.383 4.383 9 H 0.091 0.909 10 C -0.203 4.203 11 N -0.576 5.576 12 Si 0.740 3.260 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.210 1.210 16 C -0.044 4.044 17 N -0.331 5.331 18 C 0.358 3.642 19 O -0.406 6.406 20 C -0.089 4.089 21 C -0.140 4.140 22 C 0.061 3.939 23 F -0.094 7.094 24 C 0.034 3.966 25 F -0.093 7.093 26 C 0.065 3.935 27 F -0.095 7.095 28 C -0.096 4.096 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.222 0.778 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.207 0.793 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -11.018 15.789 -9.667 21.544 hybrid contribution 0.158 -0.136 0.017 0.209 sum -10.860 15.653 -9.650 21.356 Atomic orbital electron populations 1.22919 0.94771 1.04044 1.02844 1.22109 0.94200 0.96022 0.86457 0.89627 1.23088 0.99603 0.99773 0.95079 1.21311 0.94545 0.89725 0.88456 0.91182 1.42289 1.09619 1.28007 1.54921 1.19216 0.86701 1.07285 1.25148 0.90892 1.24773 0.97754 0.98163 0.99602 1.69642 1.30943 1.22377 1.34663 0.86242 0.83802 0.78427 0.77549 1.21078 1.21604 1.21034 1.23568 0.94965 0.86750 0.99134 1.48617 1.51397 1.29222 1.03862 1.17451 0.81664 0.82974 0.82083 1.90828 1.49905 1.54560 1.45271 1.19697 0.99318 0.96954 0.92889 1.22800 0.96020 0.91541 1.03615 1.17122 1.00717 0.91602 0.84423 1.91590 1.90538 1.66087 1.61153 1.17849 0.96305 0.89442 0.93022 1.91576 1.67795 1.56187 1.93706 1.17098 0.99430 0.96861 0.80120 1.91588 1.85771 1.95347 1.36756 1.21231 0.94234 0.96535 0.97551 0.90646 0.91119 0.90889 0.89915 0.89832 0.77789 0.93201 0.90487 0.90996 0.79299 0.81619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.66 7.84 37.16 0.29 -1.36 16 2 C 0.12 1.22 2.75 -66.70 -0.18 1.03 16 3 H 0.09 0.73 6.19 -51.92 -0.32 0.41 16 4 C -0.14 -1.74 6.11 -24.90 -0.15 -1.89 16 5 C 0.17 2.96 3.71 -65.79 -0.24 2.72 16 6 H 0.07 1.22 8.09 -51.93 -0.42 0.80 16 7 N -0.71 -15.97 5.25 -51.35 -0.27 -16.24 16 8 C -0.25 -6.53 9.96 -15.06 -0.15 -6.68 16 9 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 10 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 11 N -0.93 -26.52 13.06 55.49 0.72 -25.79 16 12 Si 0.91 21.41 29.55 -169.99 -5.02 16.39 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 C 0.08 1.35 6.63 -2.53 -0.02 1.33 16 17 N -0.60 -8.13 3.08 -163.81 -0.50 -8.63 16 18 C 0.57 7.99 7.62 -12.38 -0.09 7.90 16 19 O -0.53 -9.24 16.70 5.31 0.09 -9.15 16 20 C -0.08 -0.91 5.08 -104.97 -0.53 -1.44 16 21 C -0.12 -1.09 6.17 -39.12 -0.24 -1.33 16 22 C 0.08 0.76 7.29 -39.44 -0.29 0.47 16 23 F -0.12 -1.10 17.17 2.25 0.04 -1.07 16 24 C 0.06 0.55 7.32 -39.18 -0.29 0.26 16 25 F -0.11 -1.23 17.08 2.25 0.04 -1.20 16 26 C 0.09 0.84 7.29 -39.44 -0.29 0.55 16 27 F -0.12 -1.21 17.17 2.25 0.04 -1.17 16 28 C -0.08 -0.75 9.56 -39.12 -0.37 -1.13 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.62 4.23 -51.93 -0.22 0.40 16 31 H 0.07 0.70 7.73 -51.93 -0.40 0.30 16 32 H 0.08 1.09 7.45 -51.93 -0.39 0.70 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.39 9.26 7.76 -40.82 -0.32 8.94 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.08 1.42 7.98 -51.93 -0.41 1.01 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.19 1.49 2.61 -52.49 -0.14 1.35 16 39 H 0.17 1.58 7.74 -52.49 -0.41 1.18 16 LS Contribution 333.59 15.07 5.03 5.03 Total: -1.00 -29.40 333.59 -6.34 -35.73 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -3.84 Total: 5.93 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -2.66 Total: 0.17 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -0.05 Total: -50.67 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.12 Total: -3.43 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.40 -6.34 -35.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989474768.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.788 kcal (2) G-P(sol) polarization free energy of solvation -29.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds