Wall clock time and date at job start Tue Mar 31 2020 15:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.99440 * 2 1 4 4 C 1.54322 * 109.88292 * 121.09329 * 2 1 3 5 5 C 1.55155 * 103.09902 * 141.70002 * 4 2 1 6 6 H 1.09005 * 111.00419 * 82.48883 * 5 4 2 7 7 N 1.46498 * 111.00413 * 206.29497 * 5 4 2 8 8 C 1.36942 * 120.00237 * 204.99873 * 7 5 4 9 9 H 1.08003 * 119.99813 * 0.02562 * 8 7 5 10 10 C 1.38806 * 120.00269 * 180.02562 * 8 7 5 11 11 N 1.31619 * 120.00186 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00126 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47134 * 60.00153 * 12 10 8 14 14 H 1.48503 * 109.47131 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47043 * 300.00161 * 12 10 8 16 16 C 1.54905 * 101.58624 * 324.41102 * 5 4 2 17 17 N 1.47429 * 104.82891 * 37.00864 * 16 5 4 18 18 C 1.34771 * 125.64813 * 155.93038 * 17 16 5 19 19 O 1.21568 * 120.00384 * 353.74351 * 18 17 16 20 20 C 1.47740 * 120.00236 * 173.74513 * 18 17 16 21 21 C 1.39630 * 120.09572 * 16.93753 * 20 18 17 22 22 C 1.38076 * 119.89454 * 179.72383 * 21 20 18 23 23 F 1.35098 * 119.95194 * 180.27472 * 22 21 20 24 24 C 1.38789 * 120.09763 * 0.58141 * 22 21 20 25 25 F 1.35104 * 119.89604 * 179.72270 * 24 22 21 26 26 C 1.38781 * 120.20622 * 359.69143 * 24 22 21 27 27 F 1.35101 * 119.95130 * 180.02562 * 26 24 22 28 28 C 1.38074 * 120.10046 * 0.02562 * 26 24 22 29 29 H 1.08998 * 109.47413 * 316.39273 * 1 2 3 30 30 H 1.08994 * 109.47403 * 76.39625 * 1 2 3 31 31 H 1.09005 * 109.46676 * 196.39929 * 1 2 3 32 32 H 1.08998 * 110.72242 * 23.25292 * 4 2 1 33 33 H 1.09002 * 110.72588 * 260.15247 * 4 2 1 34 34 H 0.97001 * 120.00124 * 25.00520 * 7 5 4 35 35 H 0.97000 * 120.00395 * 179.97438 * 11 10 8 36 36 H 1.08996 * 110.37219 * 155.84442 * 16 5 4 37 37 H 1.09000 * 110.36728 * 278.06476 * 16 5 4 38 38 H 1.07997 * 120.05465 * 0.02562 * 21 20 18 39 39 H 1.07993 * 120.05203 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0244 0.0000 4 6 2.0549 -0.7495 1.2427 5 6 3.2897 -1.5140 0.6968 6 1 4.1669 -0.8676 0.6652 7 7 3.5556 -2.7166 1.4900 8 6 4.8196 -3.2416 1.5350 9 1 5.6205 -2.7689 0.9860 10 6 5.0714 -4.3814 2.2861 11 7 4.0952 -4.9579 2.9547 12 14 6.7957 -5.0972 2.3480 13 1 7.7313 -4.0871 2.9043 14 1 6.7996 -6.3050 3.2119 15 1 7.2269 -5.4689 0.9764 16 6 2.8202 -1.8831 -0.7325 17 7 2.0353 -0.7197 -1.1840 18 6 1.8147 -0.3711 -2.4671 19 8 2.3729 -0.9715 -3.3647 20 6 0.8945 0.7408 -2.7828 21 6 0.5299 1.6515 -1.7892 22 6 -0.3259 2.6925 -2.0902 23 9 -0.6750 3.5775 -1.1311 24 6 -0.8330 2.8272 -3.3751 25 9 -1.6745 3.8439 -3.6638 26 6 -0.4779 1.9210 -4.3645 27 9 -0.9741 2.0573 -5.6136 28 6 0.3819 0.8804 -4.0741 29 1 -0.3634 0.7441 0.7088 30 1 -0.3634 0.2417 -0.9988 31 1 -0.3633 -0.9859 0.2902 32 1 1.3052 -1.4459 1.6182 33 1 2.3500 -0.0460 2.0213 34 1 2.8363 -3.1411 1.9833 35 1 4.2711 -5.7547 3.4794 36 1 3.6789 -2.0379 -1.3858 37 1 2.1969 -2.7769 -0.7081 38 1 0.9205 1.5448 -0.7880 39 1 0.6580 0.1759 -4.8447 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989474768.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:05 Heat of formation + Delta-G solvation = -102.765999 kcal Electronic energy + Delta-G solvation = -27921.936328 eV Core-core repulsion = 23416.529932 eV Total energy + Delta-G solvation = -4505.406396 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.96049 -50.32105 -49.63673 -42.08897 -39.56684 -38.83087 -36.29302 -33.90023 -32.82214 -32.08176 -31.69423 -29.80034 -27.21318 -26.05013 -25.03609 -24.47752 -23.15444 -21.90062 -20.88844 -19.58727 -19.32660 -19.05460 -18.95134 -17.98331 -17.68158 -17.30982 -16.92899 -16.63270 -16.54930 -16.38857 -16.23915 -16.07188 -15.67485 -15.59128 -15.24209 -15.04543 -14.53692 -14.20967 -13.99025 -13.94080 -13.83995 -13.34900 -13.28610 -12.95481 -12.85675 -12.72870 -12.39037 -12.36258 -12.16935 -12.01358 -11.71677 -11.51466 -11.29990 -10.96875 -10.24602 -10.00223 -9.77523 -9.06528 -7.96071 -5.25566 -0.92299 -0.46784 1.25769 1.49705 1.51626 1.57119 1.64052 2.09381 2.18389 2.56454 2.86200 2.91934 3.02198 3.13881 3.36313 3.49189 3.60332 3.79075 3.89096 4.02910 4.12347 4.20880 4.23809 4.35105 4.43537 4.50104 4.52653 4.67897 4.70470 4.83462 4.87308 5.00270 5.16693 5.21745 5.27348 5.32228 5.38050 5.54018 6.25762 6.36973 6.88045 7.33709 8.05363 8.28501 9.26227 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.026701 B = 0.002727 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.397809 B =10266.164276 C =10984.730660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.115 3.885 3 H 0.121 0.879 4 C -0.125 4.125 5 C 0.165 3.835 6 H 0.070 0.930 7 N -0.721 5.721 8 C -0.247 4.247 9 H 0.076 0.924 10 C -0.067 4.067 11 N -0.964 5.964 12 Si 0.967 3.033 13 H -0.276 1.276 14 H -0.297 1.297 15 H -0.282 1.282 16 C 0.092 3.908 17 N -0.597 5.597 18 C 0.571 3.429 19 O -0.571 6.571 20 C -0.090 4.090 21 C -0.100 4.100 22 C 0.090 3.910 23 F -0.112 7.112 24 C 0.058 3.942 25 F -0.119 7.119 26 C 0.086 3.914 27 F -0.120 7.120 28 C -0.069 4.069 29 H 0.106 0.894 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.379 0.621 35 H 0.252 0.748 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.206 0.794 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.172 18.469 -8.933 23.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.013 3.987 3 H 0.138 0.862 4 C -0.163 4.163 5 C 0.054 3.946 6 H 0.088 0.912 7 N -0.360 5.360 8 C -0.379 4.379 9 H 0.094 0.906 10 C -0.260 4.260 11 N -0.614 5.614 12 Si 0.796 3.204 13 H -0.202 1.202 14 H -0.223 1.223 15 H -0.209 1.209 16 C -0.034 4.034 17 N -0.329 5.329 18 C 0.360 3.640 19 O -0.452 6.452 20 C -0.094 4.094 21 C -0.118 4.118 22 C 0.070 3.930 23 F -0.091 7.091 24 C 0.036 3.964 25 F -0.097 7.097 26 C 0.066 3.934 27 F -0.098 7.098 28 C -0.089 4.089 29 H 0.125 0.875 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.124 0.876 34 H 0.211 0.789 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.222 0.778 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -11.760 18.209 -9.475 23.656 hybrid contribution 0.334 -0.779 -0.125 0.856 sum -11.425 17.430 -9.600 22.946 Atomic orbital electron populations 1.22919 0.92889 1.04678 1.03817 1.22395 0.95659 0.96783 0.83834 0.86225 1.23009 0.97096 0.99706 0.96512 1.21492 0.96707 0.88275 0.88145 0.91219 1.42406 1.08308 1.29563 1.55699 1.19577 0.88063 1.06761 1.23510 0.90588 1.25480 1.00911 0.99170 1.00423 1.69777 1.32563 1.22875 1.36183 0.85312 0.80296 0.77507 0.77236 1.20174 1.22293 1.20872 1.23080 0.94256 0.87570 0.98475 1.48604 1.50962 1.28441 1.04898 1.17861 0.81420 0.83211 0.81460 1.90808 1.51629 1.56277 1.46479 1.19298 0.99694 0.96670 0.93724 1.22768 0.95050 0.90438 1.03539 1.16968 1.00467 0.91500 0.84073 1.91607 1.90490 1.66000 1.60969 1.17954 0.95972 0.89098 0.93326 1.91571 1.67957 1.56394 1.93788 1.16995 0.99525 0.96860 0.80036 1.91582 1.85837 1.95365 1.37063 1.21192 0.93872 0.96440 0.97366 0.87537 0.90907 0.91820 0.90270 0.87630 0.78858 0.93919 0.92944 0.92847 0.77824 0.81659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.58 7.84 71.98 0.56 -2.02 16 2 C 0.12 2.06 2.75 45.25 0.12 2.19 16 3 H 0.12 1.43 6.19 -2.38 -0.01 1.41 16 4 C -0.12 -2.89 6.11 31.78 0.19 -2.69 16 5 C 0.16 5.56 3.71 46.38 0.17 5.73 16 6 H 0.07 2.37 8.09 -2.38 -0.02 2.35 16 7 N -0.72 -32.76 5.25 -316.38 -1.66 -34.42 16 8 C -0.25 -12.87 9.96 84.03 0.84 -12.03 16 9 H 0.08 3.82 7.83 -2.91 -0.02 3.80 16 10 C -0.07 -3.65 5.50 84.86 0.47 -3.19 16 11 N -0.96 -56.13 13.06 21.65 0.28 -55.85 16 12 Si 0.97 44.47 29.55 68.60 2.03 46.50 16 13 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 14 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 15 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 16 C 0.09 3.11 6.63 86.85 0.58 3.69 16 17 N -0.60 -15.49 3.08 -790.45 -2.44 -17.93 16 18 C 0.57 15.47 7.62 86.76 0.66 16.13 16 19 O -0.57 -20.22 16.70 -3.93 -0.07 -20.29 16 20 C -0.09 -1.74 5.08 -20.09 -0.10 -1.84 16 21 C -0.10 -1.43 6.17 22.57 0.14 -1.29 16 22 C 0.09 1.35 7.29 22.36 0.16 1.52 16 23 F -0.11 -1.71 17.17 44.97 0.77 -0.94 16 24 C 0.06 1.00 7.32 22.53 0.16 1.16 16 25 F -0.12 -2.29 17.08 44.97 0.77 -1.52 16 26 C 0.09 1.52 7.29 22.36 0.16 1.69 16 27 F -0.12 -2.31 17.17 44.97 0.77 -1.54 16 28 C -0.07 -1.26 9.56 22.57 0.22 -1.05 16 29 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 1.02 4.23 -2.39 -0.01 1.01 16 31 H 0.06 1.05 7.73 -2.38 -0.02 1.04 16 32 H 0.08 1.94 7.45 -2.39 -0.02 1.92 16 33 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.38 18.39 7.76 -92.71 -0.72 17.67 16 35 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 36 H 0.05 2.01 7.98 -2.39 -0.02 1.99 16 37 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.21 2.24 2.61 -2.91 -0.01 2.23 16 39 H 0.17 3.05 7.74 -2.91 -0.02 3.03 16 Total: -1.00 -64.91 333.59 5.22 -59.68 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.42 Total: 18.31 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 4.34 Total: 8.00 kcal Atomic # 7 Polarization: -104.38 SS G_CDS: -3.81 Total: -108.20 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.07 Total: -20.29 kcal Atomic # 9 Polarization: -6.31 SS G_CDS: 2.31 Total: -4.00 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -64.91 5.22 -59.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989474768.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.082 kcal (2) G-P(sol) polarization free energy of solvation -64.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds