Wall clock time and date at job start Tue Mar 31 2020 15:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.87207 * 2 1 4 4 C 1.54327 * 109.88529 * 121.18270 * 2 1 3 5 5 C 1.55443 * 102.96820 * 141.61119 * 4 2 1 6 6 H 1.09000 * 111.11246 * 206.46613 * 5 4 2 7 7 N 1.46496 * 111.01753 * 82.52358 * 5 4 2 8 8 C 1.36936 * 120.00043 * 161.49665 * 7 5 4 9 9 H 1.08002 * 120.00027 * 0.02562 * 8 7 5 10 10 C 1.38818 * 119.99724 * 179.97438 * 8 7 5 11 11 N 1.31615 * 120.00054 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99756 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47373 * 59.99932 * 12 10 8 14 14 H 1.48498 * 109.47179 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.47279 * 300.00086 * 12 10 8 16 16 C 1.54908 * 101.44971 * 324.51182 * 5 4 2 17 17 N 1.47030 * 109.88020 * 238.98974 * 2 1 3 18 18 C 1.34767 * 125.64805 * 61.66073 * 17 2 1 19 19 O 1.21570 * 120.00031 * 173.69042 * 18 17 2 20 20 C 1.47734 * 120.00498 * 353.69113 * 18 17 2 21 21 C 1.39639 * 120.09534 * 16.62471 * 20 18 17 22 22 C 1.38075 * 119.89192 * 179.72330 * 21 20 18 23 23 F 1.35102 * 119.94743 * 180.31739 * 22 21 20 24 24 C 1.38782 * 120.10359 * 0.57787 * 22 21 20 25 25 F 1.35105 * 119.89685 * 179.71877 * 24 22 21 26 26 C 1.38779 * 120.20277 * 359.70052 * 24 22 21 27 27 F 1.35106 * 119.94860 * 180.02562 * 26 24 22 28 28 C 1.38075 * 120.10356 * 359.97438 * 26 24 22 29 29 H 1.09006 * 109.46829 * 197.58508 * 1 2 3 30 30 H 1.08996 * 109.47139 * 317.58004 * 1 2 3 31 31 H 1.08999 * 109.47506 * 77.58801 * 1 2 3 32 32 H 1.09002 * 110.71397 * 259.97099 * 4 2 1 33 33 H 1.09001 * 110.71844 * 23.24088 * 4 2 1 34 34 H 0.97005 * 119.99877 * 341.50619 * 7 5 4 35 35 H 0.97004 * 119.99669 * 179.97438 * 11 10 8 36 36 H 1.09002 * 110.37158 * 278.11059 * 16 5 4 37 37 H 1.09007 * 110.36586 * 155.90372 * 16 5 4 38 38 H 1.08001 * 120.05409 * 0.02562 * 21 20 18 39 39 H 1.08001 * 120.05508 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0549 -0.7514 1.2416 5 6 3.2901 -1.5169 0.6897 6 1 3.4886 -2.4153 1.2742 7 7 4.4698 -0.6495 0.6469 8 6 5.7211 -1.1991 0.5614 9 1 5.8383 -2.2721 0.5250 10 6 6.8390 -0.3770 0.5203 11 7 6.6961 0.9306 0.5641 12 14 8.5458 -1.1268 0.4030 13 1 8.6478 -1.9334 -0.8397 14 1 9.5614 -0.0437 0.3755 15 1 8.7852 -1.9994 1.5805 16 6 2.8145 -1.8783 -0.7396 17 7 2.0300 -0.7123 -1.1851 18 6 1.8082 -0.3578 -2.4662 19 8 2.3654 -0.9543 -3.3671 20 6 0.8881 0.7557 -2.7759 21 6 0.5195 1.6582 -1.7762 22 6 -0.3362 2.7008 -2.0717 23 9 -0.6884 3.5784 -1.1068 24 6 -0.8394 2.8454 -3.3569 25 9 -1.6809 3.8637 -3.6401 26 6 -0.4804 1.9474 -4.3523 27 9 -0.9729 2.0934 -5.6019 28 6 0.3800 0.9057 -4.0678 29 1 -0.3633 -0.9797 0.3105 30 1 -0.3633 0.7586 0.6932 31 1 -0.3634 0.2209 -1.0036 32 1 2.3530 -0.0489 2.0199 33 1 1.3052 -1.4483 1.6161 34 1 4.3646 0.3143 0.6793 35 1 7.4773 1.5050 0.5358 36 1 2.1886 -2.7705 -0.7170 37 1 3.6705 -2.0330 -1.3965 38 1 0.9071 1.5439 -0.7746 39 1 0.6591 0.2076 -4.8432 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989474770.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:12 Heat of formation + Delta-G solvation = -84.281875 kcal Electronic energy + Delta-G solvation = -28449.757399 eV Core-core repulsion = 23945.152535 eV Total energy + Delta-G solvation = -4504.604864 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.04028 -49.42402 -48.71941 -40.95952 -38.50123 -37.53495 -34.52363 -32.39631 -31.52801 -30.92137 -30.47197 -28.42377 -26.10446 -24.50261 -23.83386 -23.43465 -22.22561 -20.40687 -19.71276 -18.44398 -18.16425 -18.03860 -17.35860 -17.06825 -16.63354 -16.08689 -15.73921 -15.67624 -15.51008 -15.20782 -15.01687 -14.76465 -14.66405 -14.27051 -13.76028 -13.65248 -13.40482 -13.04989 -13.01679 -12.84505 -12.38550 -12.16763 -11.90418 -11.82470 -11.67940 -11.18763 -11.03285 -10.82230 -10.72111 -10.52658 -10.13853 -9.94868 -9.78020 -9.28572 -9.09874 -9.08647 -8.44384 -7.10281 -5.87259 -3.17657 0.05428 0.42818 2.33823 2.85335 3.09409 3.28015 3.39725 3.45140 3.45292 3.81163 3.84547 4.03269 4.10931 4.48530 4.50006 4.63755 4.82035 4.87975 5.02350 5.15118 5.30728 5.30906 5.40996 5.41988 5.45847 5.54724 5.61290 5.74015 5.75713 5.91021 6.07535 6.14970 6.19641 6.27502 6.39217 6.54983 6.69526 7.60840 7.63545 8.18766 8.30037 9.42286 9.94858 10.29018 11.34752 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.016488 B = 0.003400 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.824763 B = 8232.761387 C = 8444.209128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.115 3.885 3 H 0.087 0.913 4 C -0.135 4.135 5 C 0.168 3.832 6 H 0.075 0.925 7 N -0.711 5.711 8 C -0.249 4.249 9 H 0.073 0.927 10 C -0.006 4.006 11 N -0.930 5.930 12 Si 0.908 3.092 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.285 1.285 16 C 0.077 3.923 17 N -0.587 5.587 18 C 0.573 3.427 19 O -0.528 6.528 20 C -0.082 4.082 21 C -0.121 4.121 22 C 0.083 3.917 23 F -0.116 7.116 24 C 0.054 3.946 25 F -0.115 7.115 26 C 0.085 3.915 27 F -0.117 7.117 28 C -0.077 4.077 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.385 0.615 35 H 0.257 0.743 36 H 0.058 0.942 37 H 0.087 0.913 38 H 0.191 0.809 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.168 0.921 -2.756 18.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.012 3.988 3 H 0.105 0.895 4 C -0.174 4.174 5 C 0.055 3.945 6 H 0.093 0.907 7 N -0.351 5.351 8 C -0.380 4.380 9 H 0.090 0.910 10 C -0.203 4.203 11 N -0.577 5.577 12 Si 0.739 3.261 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.211 1.211 16 C -0.048 4.048 17 N -0.319 5.319 18 C 0.361 3.639 19 O -0.405 6.405 20 C -0.086 4.086 21 C -0.139 4.139 22 C 0.062 3.938 23 F -0.094 7.094 24 C 0.033 3.967 25 F -0.094 7.094 26 C 0.064 3.936 27 F -0.096 7.096 28 C -0.097 4.097 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.219 0.781 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.105 0.895 38 H 0.208 0.792 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -17.751 0.608 -3.319 18.069 hybrid contribution 0.532 0.573 -0.323 0.846 sum -17.220 1.181 -3.642 17.640 Atomic orbital electron populations 1.22937 0.95098 1.03515 1.02938 1.21993 0.93528 0.96745 0.86583 0.89524 1.23118 0.98500 1.00028 0.95712 1.21429 0.86819 0.94573 0.91646 0.90717 1.42296 1.00313 1.05089 1.87406 1.19168 0.83285 0.91882 1.43660 0.90952 1.24746 0.98022 0.95318 1.02207 1.69637 1.29323 1.02020 1.56710 0.86263 0.84060 0.77841 0.77976 1.21110 1.21664 1.21132 1.23418 0.94928 0.85956 1.00464 1.48252 1.51020 1.28775 1.03807 1.17358 0.81583 0.82917 0.82085 1.90816 1.49855 1.54831 1.45024 1.19700 0.98970 0.97077 0.92824 1.22852 0.95644 0.91542 1.03864 1.17123 1.00682 0.91679 0.84299 1.91587 1.90439 1.66601 1.60757 1.17827 0.96471 0.89460 0.92987 1.91568 1.67817 1.56121 1.93850 1.17081 0.99561 0.96967 0.79984 1.91580 1.85944 1.95261 1.36780 1.21210 0.94293 0.96579 0.97573 0.91274 0.90775 0.91107 0.89338 0.90154 0.78138 0.93303 0.92400 0.89471 0.79230 0.81684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.71 7.78 37.16 0.29 -1.42 16 2 C 0.11 1.40 2.74 -66.95 -0.18 1.21 16 3 H 0.09 1.08 6.19 -51.93 -0.32 0.76 16 4 C -0.13 -1.68 6.05 -24.74 -0.15 -1.83 16 5 C 0.17 2.83 3.71 -65.63 -0.24 2.58 16 6 H 0.08 1.23 8.13 -51.93 -0.42 0.80 16 7 N -0.71 -16.06 5.27 -51.20 -0.27 -16.33 16 8 C -0.25 -6.48 9.98 -15.06 -0.15 -6.63 16 9 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 10 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 11 N -0.93 -26.96 13.06 55.49 0.72 -26.23 16 12 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 C 0.08 1.28 6.62 -2.53 -0.02 1.26 16 17 N -0.59 -8.94 3.06 -164.15 -0.50 -9.45 16 18 C 0.57 9.28 7.61 -12.38 -0.09 9.18 16 19 O -0.53 -10.38 16.69 5.30 0.09 -10.29 16 20 C -0.08 -1.05 5.07 -104.97 -0.53 -1.59 16 21 C -0.12 -1.36 6.20 -39.12 -0.24 -1.60 16 22 C 0.08 0.93 7.29 -39.44 -0.29 0.64 16 23 F -0.12 -1.32 17.17 2.25 0.04 -1.28 16 24 C 0.05 0.63 7.32 -39.18 -0.29 0.34 16 25 F -0.12 -1.41 17.08 2.25 0.04 -1.37 16 26 C 0.08 0.96 7.29 -39.44 -0.29 0.67 16 27 F -0.12 -1.37 17.17 2.25 0.04 -1.33 16 28 C -0.08 -0.90 9.56 -39.12 -0.37 -1.27 16 29 H 0.07 0.59 7.70 -51.93 -0.40 0.19 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.68 4.27 -51.93 -0.22 0.45 16 32 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.08 0.80 7.57 -51.93 -0.39 0.40 16 34 H 0.38 9.30 7.82 -40.82 -0.32 8.98 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 1.77 7.98 -51.92 -0.41 1.35 16 38 H 0.19 2.02 2.58 -52.49 -0.14 1.88 16 39 H 0.17 1.84 7.74 -52.49 -0.41 1.43 16 LS Contribution 333.65 15.07 5.03 5.03 Total: -1.00 -30.38 333.65 -6.34 -36.72 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -3.85 Total: 6.52 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -2.66 Total: 1.28 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.05 Total: -52.01 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.12 Total: -3.98 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.38 -6.34 -36.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989474770.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.557 kcal (2) G-P(sol) polarization free energy of solvation -30.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds