Wall clock time and date at job start Tue Mar 31 2020 15:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.87207 * 2 1 4 4 C 1.54327 * 109.88529 * 121.18270 * 2 1 3 5 5 C 1.55443 * 102.96820 * 141.61119 * 4 2 1 6 6 H 1.09000 * 111.11246 * 206.46613 * 5 4 2 7 7 N 1.46496 * 111.01753 * 82.52358 * 5 4 2 8 8 C 1.36936 * 120.00043 * 161.49665 * 7 5 4 9 9 H 1.08002 * 120.00027 * 0.02562 * 8 7 5 10 10 C 1.38818 * 119.99724 * 179.97438 * 8 7 5 11 11 N 1.31615 * 120.00054 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99756 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47373 * 59.99932 * 12 10 8 14 14 H 1.48498 * 109.47179 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.47279 * 300.00086 * 12 10 8 16 16 C 1.54908 * 101.44971 * 324.51182 * 5 4 2 17 17 N 1.47030 * 109.88020 * 238.98974 * 2 1 3 18 18 C 1.34767 * 125.64805 * 61.66073 * 17 2 1 19 19 O 1.21570 * 120.00031 * 173.69042 * 18 17 2 20 20 C 1.47734 * 120.00498 * 353.69113 * 18 17 2 21 21 C 1.39639 * 120.09534 * 16.62471 * 20 18 17 22 22 C 1.38075 * 119.89192 * 179.72330 * 21 20 18 23 23 F 1.35102 * 119.94743 * 180.31739 * 22 21 20 24 24 C 1.38782 * 120.10359 * 0.57787 * 22 21 20 25 25 F 1.35105 * 119.89685 * 179.71877 * 24 22 21 26 26 C 1.38779 * 120.20277 * 359.70052 * 24 22 21 27 27 F 1.35106 * 119.94860 * 180.02562 * 26 24 22 28 28 C 1.38075 * 120.10356 * 359.97438 * 26 24 22 29 29 H 1.09006 * 109.46829 * 197.58508 * 1 2 3 30 30 H 1.08996 * 109.47139 * 317.58004 * 1 2 3 31 31 H 1.08999 * 109.47506 * 77.58801 * 1 2 3 32 32 H 1.09002 * 110.71397 * 259.97099 * 4 2 1 33 33 H 1.09001 * 110.71844 * 23.24088 * 4 2 1 34 34 H 0.97005 * 119.99877 * 341.50619 * 7 5 4 35 35 H 0.97004 * 119.99669 * 179.97438 * 11 10 8 36 36 H 1.09002 * 110.37158 * 278.11059 * 16 5 4 37 37 H 1.09007 * 110.36586 * 155.90372 * 16 5 4 38 38 H 1.08001 * 120.05409 * 0.02562 * 21 20 18 39 39 H 1.08001 * 120.05508 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0549 -0.7514 1.2416 5 6 3.2901 -1.5169 0.6897 6 1 3.4886 -2.4153 1.2742 7 7 4.4698 -0.6495 0.6469 8 6 5.7211 -1.1991 0.5614 9 1 5.8383 -2.2721 0.5250 10 6 6.8390 -0.3770 0.5203 11 7 6.6961 0.9306 0.5641 12 14 8.5458 -1.1268 0.4030 13 1 8.6478 -1.9334 -0.8397 14 1 9.5614 -0.0437 0.3755 15 1 8.7852 -1.9994 1.5805 16 6 2.8145 -1.8783 -0.7396 17 7 2.0300 -0.7123 -1.1851 18 6 1.8082 -0.3578 -2.4662 19 8 2.3654 -0.9543 -3.3671 20 6 0.8881 0.7557 -2.7759 21 6 0.5195 1.6582 -1.7762 22 6 -0.3362 2.7008 -2.0717 23 9 -0.6884 3.5784 -1.1068 24 6 -0.8394 2.8454 -3.3569 25 9 -1.6809 3.8637 -3.6401 26 6 -0.4804 1.9474 -4.3523 27 9 -0.9729 2.0934 -5.6019 28 6 0.3800 0.9057 -4.0678 29 1 -0.3633 -0.9797 0.3105 30 1 -0.3633 0.7586 0.6932 31 1 -0.3634 0.2209 -1.0036 32 1 2.3530 -0.0489 2.0199 33 1 1.3052 -1.4483 1.6161 34 1 4.3646 0.3143 0.6793 35 1 7.4773 1.5050 0.5358 36 1 2.1886 -2.7705 -0.7170 37 1 3.6705 -2.0330 -1.3965 38 1 0.9071 1.5439 -0.7746 39 1 0.6591 0.2076 -4.8432 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989474770.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:11 Heat of formation + Delta-G solvation = -102.582406 kcal Electronic energy + Delta-G solvation = -28450.550969 eV Core-core repulsion = 23945.152535 eV Total energy + Delta-G solvation = -4505.398435 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.97987 -50.34197 -49.65542 -42.08031 -39.58887 -38.80489 -36.12049 -33.87278 -32.73342 -32.03472 -31.67324 -29.85171 -27.20180 -25.86498 -25.28043 -24.49063 -23.30921 -21.63665 -20.88483 -19.47507 -19.31889 -19.07565 -19.01023 -18.00117 -17.68333 -17.34402 -16.80109 -16.65221 -16.50434 -16.44632 -16.24229 -16.10010 -15.61851 -15.56611 -15.32116 -15.00964 -14.50744 -14.47178 -14.00058 -13.91350 -13.35813 -13.31938 -13.21880 -13.01706 -12.81034 -12.66812 -12.52250 -12.27955 -12.14447 -12.01973 -11.62393 -11.52950 -11.24939 -10.99313 -10.25562 -10.01360 -9.72679 -8.97506 -7.94491 -5.21636 -0.92982 -0.48582 1.27370 1.48062 1.50353 1.55365 1.74378 2.08883 2.18706 2.56592 2.86030 2.89968 3.04407 3.13246 3.38356 3.54520 3.61109 3.83335 3.90268 4.00513 4.08944 4.20417 4.25895 4.37773 4.49082 4.49411 4.65993 4.70100 4.76282 4.85071 5.00430 5.04006 5.18098 5.23028 5.26870 5.36175 5.39367 5.55412 6.28182 6.43377 6.94286 7.35790 8.10795 8.31722 9.28297 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.016488 B = 0.003400 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.824763 B = 8232.761387 C = 8444.209128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.109 3.891 3 H 0.084 0.916 4 C -0.119 4.119 5 C 0.156 3.844 6 H 0.084 0.916 7 N -0.723 5.723 8 C -0.240 4.240 9 H 0.078 0.922 10 C -0.070 4.070 11 N -0.966 5.966 12 Si 0.964 3.036 13 H -0.286 1.286 14 H -0.299 1.299 15 H -0.274 1.274 16 C 0.083 3.917 17 N -0.589 5.589 18 C 0.567 3.433 19 O -0.575 6.575 20 C -0.091 4.091 21 C -0.105 4.105 22 C 0.089 3.911 23 F -0.113 7.113 24 C 0.059 3.941 25 F -0.117 7.117 26 C 0.088 3.912 27 F -0.118 7.118 28 C -0.069 4.069 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.118 0.882 34 H 0.374 0.626 35 H 0.249 0.751 36 H 0.087 0.913 37 H 0.041 0.959 38 H 0.200 0.800 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.228 0.593 -1.720 20.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.007 3.993 3 H 0.101 0.899 4 C -0.158 4.158 5 C 0.046 3.954 6 H 0.101 0.899 7 N -0.362 5.362 8 C -0.372 4.372 9 H 0.095 0.905 10 C -0.263 4.263 11 N -0.616 5.616 12 Si 0.794 3.206 13 H -0.212 1.212 14 H -0.225 1.225 15 H -0.199 1.199 16 C -0.042 4.042 17 N -0.319 5.319 18 C 0.356 3.644 19 O -0.456 6.456 20 C -0.094 4.094 21 C -0.123 4.123 22 C 0.068 3.932 23 F -0.092 7.092 24 C 0.037 3.963 25 F -0.096 7.096 26 C 0.068 3.932 27 F -0.096 7.096 28 C -0.089 4.089 29 H 0.102 0.898 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.136 0.864 34 H 0.206 0.794 35 H 0.058 0.942 36 H 0.105 0.895 37 H 0.060 0.940 38 H 0.216 0.784 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -19.866 0.245 -2.249 19.994 hybrid contribution 1.080 0.621 -0.650 1.405 sum -18.786 0.867 -2.900 19.028 Atomic orbital electron populations 1.22874 0.92022 1.05313 1.03469 1.22238 0.95873 0.96115 0.85056 0.89895 1.23090 0.96884 1.00206 0.95585 1.21723 0.86727 0.94817 0.92153 0.89852 1.42453 1.01082 1.05217 1.87471 1.19571 0.84803 0.92154 1.40654 0.90452 1.25435 1.01249 0.95767 1.03807 1.69774 1.29417 1.03056 1.59401 0.85354 0.80366 0.76853 0.78049 1.21241 1.22545 1.19945 1.23200 0.94279 0.87822 0.98881 1.48382 1.50456 1.28556 1.04552 1.17821 0.81528 0.83204 0.81840 1.90785 1.51828 1.56655 1.46349 1.19379 0.99440 0.96872 0.93742 1.22806 0.94927 0.90796 1.03747 1.16978 1.00528 0.91552 0.84124 1.91598 1.90399 1.66522 1.60655 1.17887 0.96108 0.89161 0.93127 1.91567 1.67883 1.56234 1.93891 1.16953 0.99511 0.96818 0.79947 1.91581 1.85942 1.95249 1.36877 1.21190 0.93884 0.96552 0.97269 0.89839 0.88290 0.91467 0.89240 0.86372 0.79368 0.94195 0.89451 0.94047 0.78370 0.81514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.57 7.78 71.98 0.56 -2.01 16 2 C 0.11 2.39 2.74 45.34 0.12 2.51 16 3 H 0.08 1.91 6.19 -2.39 -0.01 1.89 16 4 C -0.12 -2.61 6.05 31.88 0.19 -2.42 16 5 C 0.16 5.04 3.71 46.48 0.17 5.22 16 6 H 0.08 2.57 8.13 -2.39 -0.02 2.55 16 7 N -0.72 -32.69 5.27 -315.91 -1.66 -34.36 16 8 C -0.24 -12.55 9.98 84.03 0.84 -11.71 16 9 H 0.08 3.88 7.83 -2.91 -0.02 3.85 16 10 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 11 N -0.97 -57.29 13.06 21.65 0.28 -57.01 16 12 Si 0.96 45.38 29.55 68.60 2.03 47.41 16 13 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 14 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 15 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 16 C 0.08 2.71 6.62 86.86 0.58 3.28 16 17 N -0.59 -17.38 3.06 -791.54 -2.43 -19.80 16 18 C 0.57 18.29 7.61 86.76 0.66 18.95 16 19 O -0.57 -23.26 16.69 -3.94 -0.07 -23.33 16 20 C -0.09 -2.24 5.07 -20.09 -0.10 -2.34 16 21 C -0.10 -2.14 6.20 22.57 0.14 -2.00 16 22 C 0.09 1.78 7.29 22.36 0.16 1.94 16 23 F -0.11 -2.30 17.17 44.97 0.77 -1.53 16 24 C 0.06 1.25 7.32 22.53 0.16 1.41 16 25 F -0.12 -2.64 17.08 44.97 0.77 -1.87 16 26 C 0.09 1.88 7.29 22.36 0.16 2.04 16 27 F -0.12 -2.60 17.17 44.97 0.77 -1.83 16 28 C -0.07 -1.56 9.56 22.57 0.22 -1.34 16 29 H 0.08 1.01 7.70 -2.38 -0.02 1.00 16 30 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 1.06 4.27 -2.39 -0.01 1.05 16 32 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.12 1.75 7.57 -2.39 -0.02 1.73 16 34 H 0.37 18.27 7.82 -92.70 -0.72 17.54 16 35 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 36 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.04 1.72 7.98 -2.38 -0.02 1.71 16 38 H 0.20 3.72 2.58 -2.91 -0.01 3.71 16 39 H 0.17 3.69 7.74 -2.91 -0.02 3.67 16 Total: -1.00 -67.44 333.65 5.22 -62.23 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.41 Total: 19.98 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: 4.34 Total: 10.11 kcal Atomic # 7 Polarization: -107.36 SS G_CDS: -3.81 Total: -111.17 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.07 Total: -23.33 kcal Atomic # 9 Polarization: -7.54 SS G_CDS: 2.31 Total: -5.23 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -67.44 5.22 -62.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989474770.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.356 kcal (2) G-P(sol) polarization free energy of solvation -67.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds