Wall clock time and date at job start Tue Mar 31 2020 16:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.64081 * 2 1 4 4 C 1.54326 * 110.87198 * 236.75277 * 2 1 3 5 5 N 1.47283 * 107.30758 * 219.38268 * 4 2 1 6 6 C 1.36940 * 125.79385 * 178.92945 * 5 4 2 7 7 H 1.07998 * 120.00050 * 341.51182 * 6 5 4 8 8 C 1.38813 * 119.99845 * 161.52064 * 6 5 4 9 9 N 1.31625 * 119.99502 * 157.60351 * 8 6 5 10 10 Si 1.86792 * 120.00162 * 337.60447 * 8 6 5 11 11 H 1.48498 * 109.47196 * 84.54220 * 10 8 6 12 12 H 1.48510 * 109.47106 * 204.53762 * 10 8 6 13 13 H 1.48492 * 109.47267 * 324.53766 * 10 8 6 14 14 C 1.47426 * 108.55833 * 358.92209 * 5 4 2 15 15 C 1.54908 * 104.92948 * 24.15781 * 14 5 4 16 16 H 1.08995 * 111.00473 * 81.00582 * 15 14 5 17 17 N 1.46501 * 111.00655 * 204.86061 * 15 14 5 18 18 C 1.34768 * 119.99654 * 273.54684 * 17 15 14 19 19 O 1.21583 * 120.00704 * 359.97438 * 18 17 15 20 20 C 1.47582 * 119.99882 * 180.02562 * 18 17 15 21 21 C 1.39744 * 120.12999 * 359.97438 * 20 18 17 22 22 C 1.37753 * 119.94439 * 179.97438 * 21 20 18 23 23 C 1.38718 * 120.21013 * 0.02562 * 22 21 20 24 24 F 1.35099 * 119.85958 * 179.97438 * 23 22 21 25 25 C 1.38658 * 120.27065 * 0.02562 * 23 22 21 26 26 F 1.35100 * 119.97167 * 179.97438 * 25 23 22 27 27 C 1.38387 * 120.05298 * 359.69986 * 25 23 22 28 28 F 1.35093 * 120.10884 * 180.29857 * 27 25 23 29 29 H 1.09000 * 109.46733 * 296.85598 * 1 2 3 30 30 H 1.09003 * 109.47391 * 56.85698 * 1 2 3 31 31 H 1.09001 * 109.46602 * 176.85715 * 1 2 3 32 32 H 1.09004 * 109.87914 * 338.78942 * 4 2 1 33 33 H 1.09005 * 109.88148 * 99.95029 * 4 2 1 34 34 H 0.97002 * 119.99552 * 179.97438 * 9 8 6 35 35 H 1.09001 * 110.36505 * 265.26095 * 14 5 4 36 36 H 1.09001 * 110.36209 * 143.05158 * 14 5 4 37 37 H 0.96998 * 119.99523 * 93.54312 * 17 15 14 38 38 H 1.08001 * 120.02607 * 359.95028 * 21 20 18 39 39 H 1.07992 * 119.89286 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0799 -0.7906 -1.2060 5 7 3.2515 -1.5489 -0.7354 6 6 4.0155 -2.3950 -1.4942 7 1 3.6271 -2.7871 -2.4225 8 6 5.2890 -2.7488 -1.0700 9 7 5.8479 -3.8538 -1.5162 10 14 6.2094 -1.6568 0.1340 11 1 5.7983 -1.9926 1.5208 12 1 7.6705 -1.8762 -0.0160 13 1 5.8914 -0.2335 -0.1457 14 6 3.4653 -1.2446 0.6912 15 6 2.0791 -0.7934 1.2151 16 1 1.4470 -1.6529 1.4383 17 7 2.2176 0.0727 2.3885 18 6 2.3115 -0.4694 3.6188 19 8 2.2808 -1.6772 3.7550 20 6 2.4505 0.4031 4.8010 21 6 2.4856 1.7916 4.6477 22 6 2.6149 2.6024 5.7539 23 6 2.7111 2.0450 7.0205 24 9 2.8382 2.8468 8.1003 25 6 2.6783 0.6683 7.1826 26 9 2.7729 0.1319 8.4189 27 6 2.5430 -0.1564 6.0796 28 9 2.5049 -1.4976 6.2368 29 1 -0.3633 0.4643 0.9168 30 1 -0.3634 0.5619 -0.8605 31 1 -0.3632 -1.0262 -0.0563 32 1 1.3190 -1.4773 -1.5770 33 1 2.3774 -0.1015 -1.9964 34 1 6.7379 -4.1008 -1.2201 35 1 4.1930 -0.4409 0.8028 36 1 3.8002 -2.1353 1.2229 37 1 2.2418 1.0363 2.2799 38 1 2.4118 2.2287 3.6629 39 1 2.6424 3.6754 5.6345 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080354475.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:09 Heat of formation + Delta-G solvation = -106.768179 kcal Electronic energy + Delta-G solvation = -28001.477780 eV Core-core repulsion = 23495.897836 eV Total energy + Delta-G solvation = -4505.579944 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 3.05 seconds Orbital eigenvalues (eV) -50.16459 -49.54716 -48.79613 -40.42496 -38.82803 -37.70681 -34.34487 -32.89526 -31.32628 -31.13762 -31.06369 -28.08842 -26.22298 -24.87791 -23.77119 -23.26740 -21.39902 -20.71173 -20.08288 -18.92432 -18.41321 -18.12153 -17.21468 -17.05725 -16.80830 -16.35910 -16.04021 -15.87726 -15.38978 -15.22435 -15.06312 -14.91654 -14.60407 -14.56069 -14.02437 -13.64134 -13.45175 -13.19786 -13.08289 -12.63431 -12.43612 -12.37153 -12.20152 -12.05189 -11.89039 -11.32672 -11.20847 -10.75259 -10.51038 -10.35650 -10.07594 -10.04357 -9.50573 -9.48181 -9.45945 -8.97044 -8.66462 -7.08289 -5.96041 -3.27012 -0.15089 0.20575 2.17522 2.67251 2.96356 3.12363 3.37247 3.44582 3.48443 3.62098 3.71975 3.85707 4.03247 4.18349 4.54324 4.70275 4.83384 4.94377 5.01726 5.08522 5.14579 5.18188 5.21167 5.28799 5.46324 5.63811 5.65871 5.79011 5.90094 5.99111 6.04168 6.19414 6.27174 6.48432 6.58259 6.67274 6.72141 7.36319 7.66630 8.06224 8.29734 8.80576 9.66960 10.13411 11.19923 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.015551 B = 0.003553 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.132878 B = 7879.545631 C = 8620.513708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.110 4.110 3 H 0.079 0.921 4 C 0.140 3.860 5 N -0.606 5.606 6 C -0.245 4.245 7 H 0.094 0.906 8 C 0.025 3.975 9 N -0.905 5.905 10 Si 0.879 3.121 11 H -0.284 1.284 12 H -0.301 1.301 13 H -0.278 1.278 14 C 0.104 3.896 15 C 0.134 3.866 16 H 0.104 0.896 17 N -0.708 5.708 18 C 0.554 3.446 19 O -0.508 6.508 20 C -0.150 4.150 21 C -0.038 4.038 22 C -0.142 4.142 23 C 0.121 3.879 24 F -0.115 7.115 25 C 0.023 3.977 26 F -0.113 7.113 27 C 0.159 3.841 28 F -0.090 7.090 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.039 0.961 33 H 0.035 0.965 34 H 0.264 0.736 35 H 0.027 0.973 36 H 0.065 0.935 37 H 0.397 0.603 38 H 0.156 0.844 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.606 17.659 14.601 25.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.130 4.130 3 H 0.097 0.903 4 C 0.015 3.985 5 N -0.333 5.333 6 C -0.371 4.371 7 H 0.112 0.888 8 C -0.174 4.174 9 N -0.548 5.548 10 Si 0.710 3.290 11 H -0.211 1.211 12 H -0.229 1.229 13 H -0.204 1.204 14 C -0.022 4.022 15 C 0.030 3.970 16 H 0.122 0.878 17 N -0.360 5.360 18 C 0.339 3.661 19 O -0.383 6.383 20 C -0.155 4.155 21 C -0.057 4.057 22 C -0.161 4.161 23 C 0.100 3.900 24 F -0.093 7.093 25 C 0.001 3.999 26 F -0.091 7.091 27 C 0.137 3.863 28 F -0.068 7.068 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.045 0.955 36 H 0.083 0.917 37 H 0.232 0.768 38 H 0.174 0.826 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -10.430 16.524 14.691 24.448 hybrid contribution 0.873 0.914 1.172 1.723 sum -9.557 17.438 15.863 25.437 Atomic orbital electron populations 1.21753 0.94210 1.02387 1.01289 1.22463 0.95895 0.99261 0.95357 0.90314 1.21469 0.90144 0.93232 0.93670 1.44701 1.32585 1.51563 1.04488 1.18621 0.94801 1.18418 1.05294 0.88819 1.24984 0.96838 0.97283 0.98270 1.69843 1.16595 1.21487 1.46909 0.87013 0.78750 0.81832 0.81447 1.21052 1.22925 1.20353 1.22277 0.93815 0.99281 0.86859 1.22428 0.98859 0.93152 0.82598 0.87831 1.45798 1.74140 1.10275 1.05776 1.17696 0.78019 0.87661 0.82693 1.90922 1.48035 1.13728 1.85637 1.20162 1.07845 0.94818 0.92648 1.21173 0.93948 0.90677 0.99876 1.21079 1.03367 1.02384 0.89274 1.17575 1.01865 0.85657 0.84880 1.91590 1.92714 1.72074 1.52931 1.17435 1.11391 0.90280 0.80747 1.91590 1.93856 1.85995 1.37686 1.17338 0.99060 0.78543 0.91348 1.91690 1.92267 1.26981 1.95877 0.92898 0.92350 0.92108 0.94255 0.94673 0.92631 0.95525 0.91673 0.76782 0.82607 0.82080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.17 37.16 0.34 -1.16 16 2 C -0.11 -1.51 3.16 -88.78 -0.28 -1.79 16 3 H 0.08 0.92 8.00 -51.93 -0.42 0.51 16 4 C 0.14 2.57 6.86 -2.92 -0.02 2.55 16 5 N -0.61 -14.43 3.22 -169.86 -0.55 -14.97 16 6 C -0.24 -6.94 10.58 -15.06 -0.16 -7.10 16 7 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 8 C 0.03 0.74 5.43 -17.43 -0.09 0.65 16 9 N -0.91 -28.25 13.97 55.49 0.78 -27.47 16 10 Si 0.88 22.94 24.27 -169.99 -4.13 18.82 16 11 H -0.28 -7.40 6.48 56.52 0.37 -7.03 16 12 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 13 H -0.28 -6.96 6.65 56.52 0.38 -6.58 16 14 C 0.10 2.27 4.38 -2.53 -0.01 2.26 16 15 C 0.13 2.19 2.76 -65.78 -0.18 2.01 16 16 H 0.10 1.85 7.64 -51.93 -0.40 1.45 16 17 N -0.71 -9.03 5.18 -52.75 -0.27 -9.30 16 18 C 0.55 8.11 7.76 -12.45 -0.10 8.01 16 19 O -0.51 -9.89 15.08 5.29 0.08 -9.81 16 20 C -0.15 -1.66 5.88 -104.91 -0.62 -2.27 16 21 C -0.04 -0.25 9.53 -39.20 -0.37 -0.62 16 22 C -0.14 -0.81 10.00 -39.58 -0.40 -1.21 16 23 C 0.12 1.01 7.31 -39.25 -0.29 0.73 16 24 F -0.11 -1.01 17.17 2.25 0.04 -0.97 16 25 C 0.02 0.24 7.30 -39.37 -0.29 -0.04 16 26 F -0.11 -1.35 17.09 2.25 0.04 -1.31 16 27 C 0.16 1.96 7.29 -38.92 -0.28 1.68 16 28 F -0.09 -1.40 15.46 2.25 0.03 -1.36 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.71 8.07 -51.93 -0.42 0.29 16 32 H 0.04 0.71 7.78 -51.93 -0.40 0.31 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 35 H 0.03 0.60 5.57 -51.93 -0.29 0.31 16 36 H 0.07 1.65 6.63 -51.93 -0.34 1.30 16 37 H 0.40 3.37 6.54 -40.82 -0.27 3.10 16 38 H 0.16 0.52 6.40 -52.49 -0.34 0.18 16 39 H 0.16 0.42 8.06 -52.49 -0.42 -0.01 16 LS Contribution 334.57 15.07 5.04 5.04 Total: -1.00 -35.22 334.57 -5.86 -41.08 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: -4.18 Total: -3.42 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -2.75 Total: 3.69 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: -0.04 Total: -51.75 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.11 Total: -3.65 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.13 Total: 18.82 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.22 -5.86 -41.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080354475.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.689 kcal (2) G-P(sol) polarization free energy of solvation -35.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.05 seconds