Wall clock time and date at job start Tue Mar 31 2020 16:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.64081 * 2 1 4 4 C 1.54326 * 110.87198 * 236.75277 * 2 1 3 5 5 N 1.47283 * 107.30758 * 219.38268 * 4 2 1 6 6 C 1.36940 * 125.79385 * 178.92945 * 5 4 2 7 7 H 1.07998 * 120.00050 * 341.51182 * 6 5 4 8 8 C 1.38813 * 119.99845 * 161.52064 * 6 5 4 9 9 N 1.31625 * 119.99502 * 157.60351 * 8 6 5 10 10 Si 1.86792 * 120.00162 * 337.60447 * 8 6 5 11 11 H 1.48498 * 109.47196 * 84.54220 * 10 8 6 12 12 H 1.48510 * 109.47106 * 204.53762 * 10 8 6 13 13 H 1.48492 * 109.47267 * 324.53766 * 10 8 6 14 14 C 1.47426 * 108.55833 * 358.92209 * 5 4 2 15 15 C 1.54908 * 104.92948 * 24.15781 * 14 5 4 16 16 H 1.08995 * 111.00473 * 81.00582 * 15 14 5 17 17 N 1.46501 * 111.00655 * 204.86061 * 15 14 5 18 18 C 1.34768 * 119.99654 * 273.54684 * 17 15 14 19 19 O 1.21583 * 120.00704 * 359.97438 * 18 17 15 20 20 C 1.47582 * 119.99882 * 180.02562 * 18 17 15 21 21 C 1.39744 * 120.12999 * 359.97438 * 20 18 17 22 22 C 1.37753 * 119.94439 * 179.97438 * 21 20 18 23 23 C 1.38718 * 120.21013 * 0.02562 * 22 21 20 24 24 F 1.35099 * 119.85958 * 179.97438 * 23 22 21 25 25 C 1.38658 * 120.27065 * 0.02562 * 23 22 21 26 26 F 1.35100 * 119.97167 * 179.97438 * 25 23 22 27 27 C 1.38387 * 120.05298 * 359.69986 * 25 23 22 28 28 F 1.35093 * 120.10884 * 180.29857 * 27 25 23 29 29 H 1.09000 * 109.46733 * 296.85598 * 1 2 3 30 30 H 1.09003 * 109.47391 * 56.85698 * 1 2 3 31 31 H 1.09001 * 109.46602 * 176.85715 * 1 2 3 32 32 H 1.09004 * 109.87914 * 338.78942 * 4 2 1 33 33 H 1.09005 * 109.88148 * 99.95029 * 4 2 1 34 34 H 0.97002 * 119.99552 * 179.97438 * 9 8 6 35 35 H 1.09001 * 110.36505 * 265.26095 * 14 5 4 36 36 H 1.09001 * 110.36209 * 143.05158 * 14 5 4 37 37 H 0.96998 * 119.99523 * 93.54312 * 17 15 14 38 38 H 1.08001 * 120.02607 * 359.95028 * 21 20 18 39 39 H 1.07992 * 119.89286 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0799 -0.7906 -1.2060 5 7 3.2515 -1.5489 -0.7354 6 6 4.0155 -2.3950 -1.4942 7 1 3.6271 -2.7871 -2.4225 8 6 5.2890 -2.7488 -1.0700 9 7 5.8479 -3.8538 -1.5162 10 14 6.2094 -1.6568 0.1340 11 1 5.7983 -1.9926 1.5208 12 1 7.6705 -1.8762 -0.0160 13 1 5.8914 -0.2335 -0.1457 14 6 3.4653 -1.2446 0.6912 15 6 2.0791 -0.7934 1.2151 16 1 1.4470 -1.6529 1.4383 17 7 2.2176 0.0727 2.3885 18 6 2.3115 -0.4694 3.6188 19 8 2.2808 -1.6772 3.7550 20 6 2.4505 0.4031 4.8010 21 6 2.4856 1.7916 4.6477 22 6 2.6149 2.6024 5.7539 23 6 2.7111 2.0450 7.0205 24 9 2.8382 2.8468 8.1003 25 6 2.6783 0.6683 7.1826 26 9 2.7729 0.1319 8.4189 27 6 2.5430 -0.1564 6.0796 28 9 2.5049 -1.4976 6.2368 29 1 -0.3633 0.4643 0.9168 30 1 -0.3634 0.5619 -0.8605 31 1 -0.3632 -1.0262 -0.0563 32 1 1.3190 -1.4773 -1.5770 33 1 2.3774 -0.1015 -1.9964 34 1 6.7379 -4.1008 -1.2201 35 1 4.1930 -0.4409 0.8028 36 1 3.8002 -2.1353 1.2229 37 1 2.2418 1.0363 2.2799 38 1 2.4118 2.2287 3.6629 39 1 2.6424 3.6754 5.6345 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080354475.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:09 Heat of formation + Delta-G solvation = -132.574774 kcal Electronic energy + Delta-G solvation = -28002.596838 eV Core-core repulsion = 23495.897836 eV Total energy + Delta-G solvation = -4506.699001 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.97175 -50.37791 -49.65836 -41.50597 -39.88646 -38.94686 -35.85042 -34.50759 -32.85898 -32.15437 -31.82685 -29.58104 -27.77168 -25.94575 -24.77939 -24.32894 -22.91257 -21.97168 -21.33557 -19.77273 -19.21754 -19.00958 -18.96182 -18.02395 -17.91816 -17.53503 -17.11510 -16.93865 -16.70281 -16.20784 -16.09282 -15.86599 -15.72550 -15.61236 -15.50015 -15.16122 -14.67283 -14.40230 -14.32656 -14.05672 -13.60156 -13.41956 -13.22976 -13.11976 -13.05645 -13.03232 -12.80482 -12.27193 -12.14299 -11.85499 -11.59938 -11.49716 -11.26420 -10.88466 -10.36841 -10.19297 -10.08431 -9.09487 -8.23010 -5.48830 -0.89404 -0.48137 1.26766 1.28638 1.34847 1.39848 1.70375 2.14874 2.20630 2.37315 2.90961 2.94621 2.98516 3.17984 3.28580 3.38529 3.46819 3.56993 3.80970 4.00276 4.15617 4.25888 4.32262 4.48290 4.58496 4.60227 4.63444 4.72203 4.76458 4.86184 4.95170 5.03761 5.12173 5.22517 5.32821 5.35937 5.53475 5.64951 6.06253 6.35741 6.71139 7.04115 7.49534 8.05017 8.96806 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.015551 B = 0.003553 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.132878 B = 7879.545631 C = 8620.513708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.088 4.088 3 H 0.117 0.883 4 C 0.130 3.870 5 N -0.626 5.626 6 C -0.233 4.233 7 H 0.065 0.935 8 C -0.038 4.038 9 N -0.955 5.955 10 Si 0.942 3.058 11 H -0.292 1.292 12 H -0.306 1.306 13 H -0.251 1.251 14 C 0.101 3.899 15 C 0.148 3.852 16 H 0.081 0.919 17 N -0.687 5.687 18 C 0.552 3.448 19 O -0.569 6.569 20 C -0.162 4.162 21 C -0.011 4.011 22 C -0.111 4.111 23 C 0.128 3.872 24 F -0.115 7.115 25 C 0.006 3.994 26 F -0.129 7.129 27 C 0.127 3.873 28 F -0.123 7.123 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.036 0.964 33 H 0.047 0.953 34 H 0.262 0.738 35 H 0.034 0.966 36 H 0.017 0.983 37 H 0.423 0.577 38 H 0.203 0.797 39 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.008 23.386 15.054 30.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.107 4.107 3 H 0.135 0.865 4 C 0.006 3.994 5 N -0.354 5.354 6 C -0.362 4.362 7 H 0.083 0.917 8 C -0.232 4.232 9 N -0.602 5.602 10 Si 0.771 3.229 11 H -0.219 1.219 12 H -0.234 1.234 13 H -0.176 1.176 14 C -0.026 4.026 15 C 0.042 3.958 16 H 0.099 0.901 17 N -0.341 5.341 18 C 0.339 3.661 19 O -0.448 6.448 20 C -0.167 4.167 21 C -0.030 4.030 22 C -0.129 4.129 23 C 0.107 3.893 24 F -0.094 7.094 25 C -0.015 4.015 26 F -0.107 7.107 27 C 0.105 3.895 28 F -0.101 7.101 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.035 0.965 37 H 0.264 0.736 38 H 0.219 0.781 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -11.877 22.359 15.148 29.504 hybrid contribution 1.217 -0.846 1.018 1.798 sum -10.660 21.513 16.166 28.945 Atomic orbital electron populations 1.21738 0.91458 1.02183 1.03687 1.22440 0.97874 0.99625 0.90776 0.86475 1.21775 0.87986 0.93415 0.96260 1.44801 1.33236 1.51899 1.05417 1.18623 0.95021 1.18147 1.04398 0.91687 1.25633 0.98101 0.98480 1.01002 1.69973 1.16992 1.23421 1.49794 0.86013 0.76887 0.81287 0.78731 1.21916 1.23406 1.17569 1.22286 0.97291 0.97456 0.85538 1.22001 0.94977 0.94013 0.84801 0.90054 1.45481 1.73289 1.11213 1.04101 1.18258 0.76531 0.87339 0.83927 1.90904 1.50680 1.16701 1.86553 1.19965 1.10155 0.96304 0.90243 1.21668 0.90852 0.88140 1.02292 1.21597 0.99732 1.04459 0.87095 1.17812 1.01038 0.84433 0.86007 1.91600 1.92612 1.71741 1.53400 1.17638 1.12764 0.91353 0.79792 1.91540 1.94164 1.86490 1.38539 1.17727 1.01380 0.77550 0.92799 1.91599 1.92939 1.29409 1.96137 0.90316 0.90086 0.93763 0.94588 0.93535 0.92953 0.94885 0.96493 0.73638 0.78054 0.77200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 9.17 71.98 0.66 -1.59 16 2 C -0.09 -2.04 3.16 -9.60 -0.03 -2.07 16 3 H 0.12 1.91 8.00 -2.39 -0.02 1.89 16 4 C 0.13 4.49 6.86 86.68 0.59 5.08 16 5 N -0.63 -29.76 3.22 -691.30 -2.22 -31.98 16 6 C -0.23 -13.63 10.58 84.03 0.89 -12.74 16 7 H 0.07 4.07 8.06 -2.91 -0.02 4.04 16 8 C -0.04 -2.29 5.43 84.86 0.46 -1.83 16 9 N -0.95 -62.33 13.97 21.65 0.30 -62.03 16 10 Si 0.94 48.56 24.27 68.60 1.66 50.22 16 11 H -0.29 -15.29 6.48 99.48 0.65 -14.65 16 12 H -0.31 -15.82 7.11 99.48 0.71 -15.11 16 13 H -0.25 -11.72 6.65 99.48 0.66 -11.06 16 14 C 0.10 4.34 4.38 86.85 0.38 4.72 16 15 C 0.15 4.55 2.76 46.38 0.13 4.68 16 16 H 0.08 2.91 7.64 -2.39 -0.02 2.89 16 17 N -0.69 -15.14 5.18 -439.09 -2.27 -17.41 16 18 C 0.55 15.47 7.76 86.71 0.67 16.15 16 19 O -0.57 -23.07 15.08 -3.98 -0.06 -23.13 16 20 C -0.16 -3.21 5.88 -20.05 -0.12 -3.33 16 21 C -0.01 -0.08 9.53 22.52 0.21 0.13 16 22 C -0.11 -0.57 10.00 22.27 0.22 -0.35 16 23 C 0.13 1.70 7.31 22.49 0.16 1.86 16 24 F -0.12 -1.65 17.17 44.97 0.77 -0.88 16 25 C 0.01 0.12 7.30 22.41 0.16 0.28 16 26 F -0.13 -3.17 17.09 44.97 0.77 -2.40 16 27 C 0.13 3.15 7.29 22.70 0.17 3.32 16 28 F -0.12 -4.10 15.46 44.97 0.70 -3.41 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.04 0.91 8.07 -2.39 -0.02 0.89 16 32 H 0.04 1.26 7.78 -2.39 -0.02 1.25 16 33 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.26 16.28 8.31 -92.71 -0.77 15.51 16 35 H 0.03 1.40 5.57 -2.39 -0.01 1.38 16 36 H 0.02 0.88 6.63 -2.39 -0.02 0.87 16 37 H 0.42 4.51 6.54 -92.71 -0.61 3.90 16 38 H 0.20 -0.39 6.40 -2.91 -0.02 -0.41 16 39 H 0.21 -0.78 8.06 -2.91 -0.02 -0.80 16 Total: -1.00 -87.20 334.57 4.62 -82.57 By element: Atomic # 1 Polarization: -6.27 SS G_CDS: 0.41 Total: -5.86 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 4.57 Total: 14.30 kcal Atomic # 7 Polarization: -107.23 SS G_CDS: -4.19 Total: -111.42 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.06 Total: -23.13 kcal Atomic # 9 Polarization: -8.92 SS G_CDS: 2.24 Total: -6.69 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 1.66 Total: 50.22 kcal Total: -87.20 4.62 -82.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080354475.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.001 kcal (2) G-P(sol) polarization free energy of solvation -87.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds