Wall clock time and date at job start Tue Mar 31 2020 15:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.87338 * 2 1 4 4 C 1.54422 * 109.88300 * 238.83243 * 2 1 3 5 5 H 1.09003 * 110.72312 * 336.73522 * 4 2 1 6 6 N 1.46502 * 110.76193 * 100.03447 * 4 2 1 7 7 C 1.34776 * 120.00269 * 199.94862 * 6 4 2 8 8 O 1.21588 * 119.99974 * 359.97438 * 7 6 4 9 9 C 1.47576 * 120.00195 * 180.02562 * 7 6 4 10 10 C 1.39739 * 120.13216 * 359.72380 * 9 7 6 11 11 C 1.37756 * 119.94488 * 179.71961 * 10 9 7 12 12 C 1.38709 * 120.20988 * 0.55414 * 11 10 9 13 13 F 1.35101 * 119.86813 * 179.69612 * 12 11 10 14 14 C 1.38668 * 120.27062 * 359.71926 * 12 11 10 15 15 F 1.35099 * 119.97503 * 180.02562 * 14 12 11 16 16 C 1.38386 * 120.05217 * 0.02562 * 14 12 11 17 17 F 1.35088 * 120.10689 * 180.02562 * 16 14 12 18 18 C 1.55153 * 102.89769 * 218.39416 * 4 2 1 19 19 C 1.54914 * 101.61592 * 35.49846 * 18 4 2 20 20 N 1.47023 * 109.88291 * 121.01367 * 2 1 3 21 21 C 1.36940 * 125.64842 * 298.32523 * 20 2 1 22 22 H 1.07997 * 119.99801 * 349.86576 * 21 20 2 23 23 C 1.38817 * 119.99970 * 169.86600 * 21 20 2 24 24 N 1.31618 * 119.99610 * 350.47893 * 23 21 20 25 25 Si 1.86791 * 119.99937 * 170.47910 * 23 21 20 26 26 H 1.48502 * 109.47028 * 94.13766 * 25 23 21 27 27 H 1.48497 * 109.47230 * 214.13656 * 25 23 21 28 28 H 1.48506 * 109.47338 * 334.13707 * 25 23 21 29 29 H 1.09005 * 109.47027 * 300.43638 * 1 2 3 30 30 H 1.09000 * 109.47133 * 60.44022 * 1 2 3 31 31 H 1.08999 * 109.47114 * 180.43723 * 1 2 3 32 32 H 0.97000 * 120.00002 * 19.94155 * 6 4 2 33 33 H 1.08005 * 120.02650 * 359.97438 * 10 9 7 34 34 H 1.07990 * 119.89505 * 180.27247 * 11 10 9 35 35 H 1.08997 * 111.00382 * 277.40324 * 18 4 2 36 36 H 1.09000 * 111.00255 * 153.59247 * 18 4 2 37 37 H 1.08992 * 110.36234 * 81.81115 * 19 18 4 38 38 H 1.08998 * 110.36103 * 204.13293 * 19 18 4 39 39 H 0.97000 * 119.99533 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0552 -0.7516 -1.2426 5 1 1.3056 -1.4487 -1.6171 6 7 2.4563 0.1919 -2.2891 7 6 2.5572 -0.2226 -3.5675 8 8 2.3158 -1.3798 -3.8523 9 6 2.9618 0.7277 -4.6217 10 6 3.2353 2.0593 -4.2983 11 6 3.6182 2.9417 -5.2844 12 6 3.7223 2.5155 -6.6003 13 9 4.0926 3.3883 -7.5629 14 6 3.4475 1.1975 -6.9320 15 9 3.5513 0.7887 -8.2155 16 6 3.0670 0.3004 -5.9494 17 9 2.7995 -0.9840 -6.2712 18 6 3.2876 -1.5152 -0.6902 19 6 2.8145 -1.8784 0.7396 20 7 2.0300 -0.7124 1.1849 21 6 1.8049 -0.3521 2.4868 22 1 1.3585 0.6050 2.7127 23 6 2.1506 -1.2171 3.5160 24 7 2.5179 -2.4511 3.2431 25 14 2.0943 -0.6296 5.2883 26 1 0.7809 -0.9819 5.8850 27 1 3.1805 -1.2835 6.0613 28 1 2.2766 0.8437 5.3275 29 1 -0.3633 0.5206 0.8861 30 1 -0.3633 0.5070 -0.8939 31 1 -0.3633 -1.0276 0.0078 32 1 2.6491 1.1150 -2.0619 33 1 3.1505 2.3955 -3.2754 34 1 3.8337 3.9696 -5.0329 35 1 4.1654 -0.8698 -0.6591 36 1 3.4859 -2.4128 -1.2759 37 1 2.1886 -2.7704 0.7168 38 1 3.6716 -2.0318 1.3952 39 1 2.7598 -3.0554 3.9622 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088826923.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:53 Heat of formation + Delta-G solvation = -110.625949 kcal Electronic energy + Delta-G solvation = -27644.847507 eV Core-core repulsion = 23139.100278 eV Total energy + Delta-G solvation = -4505.747229 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 6.06 seconds Orbital eigenvalues (eV) -50.15684 -49.54149 -48.79420 -40.35455 -38.69228 -37.49380 -34.25592 -32.32673 -31.17876 -31.08286 -30.43109 -28.63020 -25.44154 -24.14162 -24.00507 -23.58192 -21.16711 -20.30650 -19.97120 -18.87046 -18.40007 -18.06456 -17.20156 -16.85663 -16.74758 -16.29628 -15.91858 -15.84399 -15.30889 -15.02662 -14.87307 -14.74021 -14.63631 -14.35553 -14.01868 -13.61874 -13.44145 -12.88187 -12.61235 -12.40459 -12.35295 -12.16401 -12.08561 -11.62251 -11.17669 -10.99268 -10.82336 -10.65239 -10.49700 -10.11932 -9.98961 -9.89924 -9.68949 -9.48085 -9.44788 -8.82711 -8.63057 -6.90174 -5.80175 -3.14226 -0.12772 0.22399 2.20294 2.71371 3.02682 3.15418 3.35651 3.41519 3.43387 3.64198 3.73021 3.89133 4.07065 4.23431 4.44712 4.84948 5.02092 5.16171 5.23035 5.24177 5.32319 5.36894 5.42994 5.52065 5.72780 6.00848 6.04416 6.11577 6.22490 6.27325 6.41277 6.52186 6.62221 6.80699 7.02009 7.43123 7.45345 7.54852 7.72876 8.11044 8.19552 9.12203 9.74262 10.40334 11.32414 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.027084 B = 0.002600 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.556743 B =10766.479049 C =11281.129047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.036 0.964 4 C 0.136 3.864 5 H 0.096 0.904 6 N -0.704 5.704 7 C 0.556 3.444 8 O -0.518 6.518 9 C -0.150 4.150 10 C -0.037 4.037 11 C -0.142 4.142 12 C 0.120 3.880 13 F -0.115 7.115 14 C 0.022 3.978 15 F -0.114 7.114 16 C 0.158 3.842 17 F -0.092 7.092 18 C -0.155 4.155 19 C 0.174 3.826 20 N -0.593 5.593 21 C -0.229 4.229 22 H 0.076 0.924 23 C -0.005 4.005 24 N -0.915 5.915 25 Si 0.910 3.090 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.280 1.280 29 H 0.056 0.944 30 H 0.037 0.963 31 H 0.053 0.947 32 H 0.397 0.603 33 H 0.158 0.842 34 H 0.162 0.838 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.030 0.970 38 H 0.072 0.928 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.562 11.960 -18.030 21.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.053 0.947 4 C 0.032 3.968 5 H 0.114 0.886 6 N -0.355 5.355 7 C 0.341 3.659 8 O -0.394 6.394 9 C -0.154 4.154 10 C -0.056 4.056 11 C -0.161 4.161 12 C 0.100 3.900 13 F -0.094 7.094 14 C 0.000 4.000 15 F -0.092 7.092 16 C 0.136 3.864 17 F -0.070 7.070 18 C -0.195 4.195 19 C 0.049 3.951 20 N -0.319 5.319 21 C -0.358 4.358 22 H 0.094 0.906 23 C -0.202 4.202 24 N -0.562 5.562 25 Si 0.740 3.260 26 H -0.216 1.216 27 H -0.216 1.216 28 H -0.206 1.206 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.233 0.767 33 H 0.175 0.825 34 H 0.179 0.821 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.048 0.952 38 H 0.091 0.909 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.423 10.965 -18.085 21.288 hybrid contribution 0.064 0.543 0.508 0.746 sum 2.487 11.508 -17.578 21.156 Atomic orbital electron populations 1.22251 0.97720 1.01605 0.99964 1.21019 0.92660 0.94742 0.86779 0.94654 1.22241 0.97743 0.90745 0.86089 0.88574 1.45944 1.68763 1.14222 1.06617 1.17660 0.78704 0.87193 0.82391 1.90884 1.48808 1.17789 1.81917 1.20186 1.06909 0.95869 0.92448 1.21216 0.93418 0.90316 1.00630 1.21098 1.02878 1.02540 0.89547 1.17584 1.00178 0.85272 0.87003 1.91590 1.88356 1.67342 1.62065 1.17439 1.10138 0.92256 0.80144 1.91585 1.94010 1.90484 1.33148 1.17324 0.98148 0.79772 0.91176 1.91676 1.89942 1.32602 1.92755 1.23412 0.96666 0.99603 0.99772 1.21418 0.95701 0.89460 0.88563 1.44489 1.58365 1.28963 1.00079 1.18943 1.36564 0.99904 0.80350 0.90587 1.24833 1.01956 0.95366 0.98025 1.69955 1.50937 1.04344 1.30931 0.86143 0.77311 0.77849 0.84652 1.21608 1.21622 1.20602 0.92528 0.94416 0.92820 0.76706 0.82474 0.82070 0.91907 0.91630 0.95203 0.90949 0.93603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 9.14 37.16 0.34 -2.40 16 2 C 0.16 2.89 3.48 -66.90 -0.23 2.65 16 3 H 0.04 0.61 7.70 -51.93 -0.40 0.21 16 4 C 0.14 2.27 2.76 -66.04 -0.18 2.09 16 5 H 0.10 1.76 7.41 -51.93 -0.38 1.37 16 6 N -0.70 -9.02 5.16 -53.01 -0.27 -9.29 16 7 C 0.56 7.67 7.76 -12.45 -0.10 7.58 16 8 O -0.52 -9.35 15.07 5.29 0.08 -9.27 16 9 C -0.15 -1.56 5.88 -104.92 -0.62 -2.18 16 10 C -0.04 -0.24 9.53 -39.20 -0.37 -0.61 16 11 C -0.14 -0.80 10.00 -39.58 -0.40 -1.19 16 12 C 0.12 0.97 7.31 -39.25 -0.29 0.69 16 13 F -0.12 -0.99 17.17 2.25 0.04 -0.95 16 14 C 0.02 0.22 7.30 -39.37 -0.29 -0.07 16 15 F -0.11 -1.30 17.09 2.25 0.04 -1.26 16 16 C 0.16 1.83 7.29 -38.92 -0.28 1.54 16 17 F -0.09 -1.32 15.46 2.25 0.03 -1.29 16 18 C -0.15 -2.86 6.76 -24.58 -0.17 -3.03 16 19 C 0.17 4.03 5.42 -2.53 -0.01 4.02 16 20 N -0.59 -14.04 3.13 -162.52 -0.51 -14.55 16 21 C -0.23 -6.00 9.84 -15.06 -0.15 -6.15 16 22 H 0.08 1.92 7.85 -52.49 -0.41 1.51 16 23 C 0.00 -0.13 5.40 -17.43 -0.09 -0.22 16 24 N -0.92 -26.02 10.69 55.49 0.59 -25.43 16 25 Si 0.91 21.25 29.56 -169.99 -5.03 16.22 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 29 H 0.06 1.04 8.03 -51.93 -0.42 0.62 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.40 3.75 6.34 -40.82 -0.26 3.49 16 33 H 0.16 0.58 6.40 -52.48 -0.34 0.25 16 34 H 0.16 0.43 8.06 -52.49 -0.42 0.01 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 38 H 0.07 1.87 6.94 -51.93 -0.36 1.51 16 39 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 340.18 15.07 5.13 5.13 Total: -1.00 -31.60 340.18 -6.97 -38.57 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -4.24 Total: -0.61 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -2.84 Total: 2.72 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: -0.19 Total: -49.26 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.08 Total: -9.27 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.11 Total: -3.50 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.60 -6.97 -38.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088826923.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.052 kcal (2) G-P(sol) polarization free energy of solvation -31.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.07 seconds