Wall clock time and date at job start Tue Mar 31 2020 15:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.87338 * 2 1 4 4 C 1.54422 * 109.88300 * 238.83243 * 2 1 3 5 5 H 1.09003 * 110.72312 * 336.73522 * 4 2 1 6 6 N 1.46502 * 110.76193 * 100.03447 * 4 2 1 7 7 C 1.34776 * 120.00269 * 199.94862 * 6 4 2 8 8 O 1.21588 * 119.99974 * 359.97438 * 7 6 4 9 9 C 1.47576 * 120.00195 * 180.02562 * 7 6 4 10 10 C 1.39739 * 120.13216 * 359.72380 * 9 7 6 11 11 C 1.37756 * 119.94488 * 179.71961 * 10 9 7 12 12 C 1.38709 * 120.20988 * 0.55414 * 11 10 9 13 13 F 1.35101 * 119.86813 * 179.69612 * 12 11 10 14 14 C 1.38668 * 120.27062 * 359.71926 * 12 11 10 15 15 F 1.35099 * 119.97503 * 180.02562 * 14 12 11 16 16 C 1.38386 * 120.05217 * 0.02562 * 14 12 11 17 17 F 1.35088 * 120.10689 * 180.02562 * 16 14 12 18 18 C 1.55153 * 102.89769 * 218.39416 * 4 2 1 19 19 C 1.54914 * 101.61592 * 35.49846 * 18 4 2 20 20 N 1.47023 * 109.88291 * 121.01367 * 2 1 3 21 21 C 1.36940 * 125.64842 * 298.32523 * 20 2 1 22 22 H 1.07997 * 119.99801 * 349.86576 * 21 20 2 23 23 C 1.38817 * 119.99970 * 169.86600 * 21 20 2 24 24 N 1.31618 * 119.99610 * 350.47893 * 23 21 20 25 25 Si 1.86791 * 119.99937 * 170.47910 * 23 21 20 26 26 H 1.48502 * 109.47028 * 94.13766 * 25 23 21 27 27 H 1.48497 * 109.47230 * 214.13656 * 25 23 21 28 28 H 1.48506 * 109.47338 * 334.13707 * 25 23 21 29 29 H 1.09005 * 109.47027 * 300.43638 * 1 2 3 30 30 H 1.09000 * 109.47133 * 60.44022 * 1 2 3 31 31 H 1.08999 * 109.47114 * 180.43723 * 1 2 3 32 32 H 0.97000 * 120.00002 * 19.94155 * 6 4 2 33 33 H 1.08005 * 120.02650 * 359.97438 * 10 9 7 34 34 H 1.07990 * 119.89505 * 180.27247 * 11 10 9 35 35 H 1.08997 * 111.00382 * 277.40324 * 18 4 2 36 36 H 1.09000 * 111.00255 * 153.59247 * 18 4 2 37 37 H 1.08992 * 110.36234 * 81.81115 * 19 18 4 38 38 H 1.08998 * 110.36103 * 204.13293 * 19 18 4 39 39 H 0.97000 * 119.99533 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0552 -0.7516 -1.2426 5 1 1.3056 -1.4487 -1.6171 6 7 2.4563 0.1919 -2.2891 7 6 2.5572 -0.2226 -3.5675 8 8 2.3158 -1.3798 -3.8523 9 6 2.9618 0.7277 -4.6217 10 6 3.2353 2.0593 -4.2983 11 6 3.6182 2.9417 -5.2844 12 6 3.7223 2.5155 -6.6003 13 9 4.0926 3.3883 -7.5629 14 6 3.4475 1.1975 -6.9320 15 9 3.5513 0.7887 -8.2155 16 6 3.0670 0.3004 -5.9494 17 9 2.7995 -0.9840 -6.2712 18 6 3.2876 -1.5152 -0.6902 19 6 2.8145 -1.8784 0.7396 20 7 2.0300 -0.7124 1.1849 21 6 1.8049 -0.3521 2.4868 22 1 1.3585 0.6050 2.7127 23 6 2.1506 -1.2171 3.5160 24 7 2.5179 -2.4511 3.2431 25 14 2.0943 -0.6296 5.2883 26 1 0.7809 -0.9819 5.8850 27 1 3.1805 -1.2835 6.0613 28 1 2.2766 0.8437 5.3275 29 1 -0.3633 0.5206 0.8861 30 1 -0.3633 0.5070 -0.8939 31 1 -0.3633 -1.0276 0.0078 32 1 2.6491 1.1150 -2.0619 33 1 3.1505 2.3955 -3.2754 34 1 3.8337 3.9696 -5.0329 35 1 4.1654 -0.8698 -0.6591 36 1 3.4859 -2.4128 -1.2759 37 1 2.1886 -2.7704 0.7168 38 1 3.6716 -2.0318 1.3952 39 1 2.7598 -3.0554 3.9622 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088826923.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:47 Heat of formation + Delta-G solvation = -130.500472 kcal Electronic energy + Delta-G solvation = -27645.709331 eV Core-core repulsion = 23139.100278 eV Total energy + Delta-G solvation = -4506.609053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -50.92875 -50.33288 -49.61410 -41.40399 -39.74241 -38.82854 -35.69801 -33.98103 -32.21099 -31.94036 -31.77946 -30.28908 -26.79710 -25.86000 -25.07178 -24.31019 -22.44390 -21.69296 -21.48845 -19.72470 -19.19259 -18.94328 -18.62504 -17.97711 -17.69774 -17.44540 -16.90721 -16.67324 -16.54383 -16.16328 -15.89653 -15.84559 -15.65713 -15.58113 -15.47952 -15.01327 -14.33650 -14.28161 -13.97468 -13.85035 -13.36908 -13.17118 -13.04383 -12.98369 -12.86654 -12.78665 -12.55696 -12.24450 -12.08757 -11.91473 -11.59180 -11.50687 -11.17607 -10.65307 -10.28857 -10.14762 -9.99050 -8.84118 -7.82780 -5.17776 -0.84363 -0.43707 1.41605 1.50974 1.51348 1.60782 1.78544 2.19823 2.26618 2.54366 2.95370 3.00296 3.23304 3.34447 3.38485 3.52955 3.64904 3.84939 3.93911 4.19245 4.23612 4.36718 4.53611 4.61283 4.64773 4.65771 4.71630 4.77004 4.85343 4.96640 5.06906 5.13909 5.36542 5.38697 5.52459 5.58278 5.62982 5.74176 6.24097 6.43128 7.09307 7.11215 7.80375 8.46060 9.29347 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.027084 B = 0.002600 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.556743 B =10766.479049 C =11281.129047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.153 3.847 3 H 0.067 0.933 4 C 0.153 3.847 5 H 0.078 0.922 6 N -0.687 5.687 7 C 0.558 3.442 8 O -0.568 6.568 9 C -0.159 4.159 10 C -0.013 4.013 11 C -0.113 4.113 12 C 0.127 3.873 13 F -0.117 7.117 14 C 0.006 3.994 15 F -0.128 7.128 16 C 0.132 3.868 17 F -0.120 7.120 18 C -0.140 4.140 19 C 0.181 3.819 20 N -0.612 5.612 21 C -0.228 4.228 22 H 0.088 0.912 23 C -0.067 4.067 24 N -0.952 5.952 25 Si 0.974 3.026 26 H -0.292 1.292 27 H -0.299 1.299 28 H -0.263 1.263 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.028 0.972 32 H 0.419 0.581 33 H 0.197 0.803 34 H 0.207 0.793 35 H 0.079 0.921 36 H 0.063 0.937 37 H -0.008 1.008 38 H 0.039 0.961 39 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.842 16.316 -18.326 24.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.046 3.954 3 H 0.085 0.915 4 C 0.048 3.952 5 H 0.096 0.904 6 N -0.340 5.340 7 C 0.345 3.655 8 O -0.447 6.447 9 C -0.163 4.163 10 C -0.031 4.031 11 C -0.131 4.131 12 C 0.106 3.894 13 F -0.095 7.095 14 C -0.015 4.015 15 F -0.107 7.107 16 C 0.110 3.890 17 F -0.098 7.098 18 C -0.179 4.179 19 C 0.055 3.945 20 N -0.338 5.338 21 C -0.357 4.357 22 H 0.105 0.895 23 C -0.260 4.260 24 N -0.600 5.600 25 Si 0.803 3.197 26 H -0.219 1.219 27 H -0.226 1.226 28 H -0.187 1.187 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.047 0.953 32 H 0.258 0.742 33 H 0.214 0.786 34 H 0.224 0.776 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.010 0.990 38 H 0.057 0.943 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.697 15.404 -18.411 24.156 hybrid contribution -0.029 -0.721 0.517 0.887 sum 2.667 14.684 -17.894 23.301 Atomic orbital electron populations 1.22157 0.96800 1.00471 1.01387 1.21249 0.93264 0.95569 0.85304 0.91541 1.21757 0.96165 0.90873 0.86441 0.90365 1.45594 1.68377 1.14556 1.05454 1.18095 0.77458 0.87042 0.82899 1.90872 1.50910 1.20264 1.82676 1.19939 1.08846 0.96926 0.90627 1.21629 0.90825 0.88079 1.02608 1.21559 0.99860 1.04148 0.87566 1.17797 0.99428 0.84170 0.88013 1.91597 1.88278 1.67098 1.62502 1.17613 1.11291 0.93175 0.79391 1.91541 1.94267 1.90825 1.34065 1.17630 0.99975 0.79094 0.92300 1.91598 1.90566 1.34570 1.93074 1.23208 0.97982 1.00221 0.96526 1.21114 0.93893 0.88669 0.90809 1.44736 1.58921 1.29152 1.00975 1.19354 1.34817 0.99969 0.81581 0.89451 1.25639 1.02851 0.95607 1.01886 1.70166 1.52926 1.05545 1.31405 0.85135 0.76496 0.78097 0.80008 1.21913 1.22607 1.18739 0.93322 0.90696 0.95266 0.74155 0.78640 0.77634 0.90213 0.91852 0.98997 0.94284 0.94535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.92 9.14 71.98 0.66 -4.27 16 2 C 0.15 5.30 3.48 45.37 0.16 5.46 16 3 H 0.07 1.97 7.70 -2.39 -0.02 1.95 16 4 C 0.15 4.90 2.76 46.21 0.13 5.03 16 5 H 0.08 2.85 7.41 -2.39 -0.02 2.83 16 6 N -0.69 -15.37 5.16 -439.87 -2.27 -17.64 16 7 C 0.56 14.45 7.76 86.71 0.67 15.12 16 8 O -0.57 -20.70 15.07 -3.99 -0.06 -20.76 16 9 C -0.16 -2.92 5.88 -20.06 -0.12 -3.04 16 10 C -0.01 -0.10 9.53 22.52 0.21 0.12 16 11 C -0.11 -0.62 10.00 22.27 0.22 -0.40 16 12 C 0.13 1.62 7.31 22.49 0.16 1.79 16 13 F -0.12 -1.64 17.17 44.97 0.77 -0.87 16 14 C 0.01 0.12 7.30 22.41 0.16 0.29 16 15 F -0.13 -2.96 17.09 44.97 0.77 -2.19 16 16 C 0.13 2.99 7.29 22.70 0.17 3.15 16 17 F -0.12 -3.63 15.46 44.97 0.70 -2.94 16 18 C -0.14 -5.12 6.76 31.99 0.22 -4.91 16 19 C 0.18 8.68 5.42 86.86 0.47 9.15 16 20 N -0.61 -28.79 3.13 -668.08 -2.09 -30.88 16 21 C -0.23 -11.82 9.84 84.03 0.83 -10.99 16 22 H 0.09 4.24 7.85 -2.91 -0.02 4.22 16 23 C -0.07 -3.64 5.40 84.86 0.46 -3.18 16 24 N -0.95 -56.16 10.69 21.65 0.23 -55.93 16 25 Si 0.97 43.94 29.56 68.60 2.03 45.97 16 26 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 27 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 28 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 29 H 0.05 1.67 8.03 -2.38 -0.02 1.66 16 30 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.42 5.65 6.34 -92.71 -0.59 5.06 16 33 H 0.20 -0.02 6.40 -2.91 -0.02 -0.04 16 34 H 0.21 -0.53 8.06 -2.92 -0.02 -0.55 16 35 H 0.08 2.65 8.14 -2.39 -0.02 2.64 16 36 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 37 H -0.01 -0.44 8.07 -2.39 -0.02 -0.46 16 38 H 0.04 2.10 6.94 -2.39 -0.02 2.09 16 39 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -74.64 340.18 5.01 -69.63 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: 0.53 Total: 2.30 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 4.40 Total: 13.31 kcal Atomic # 7 Polarization: -100.33 SS G_CDS: -4.13 Total: -104.45 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.06 Total: -20.76 kcal Atomic # 9 Polarization: -8.23 SS G_CDS: 2.24 Total: -6.00 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -74.64 5.01 -69.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088826923.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.871 kcal (2) G-P(sol) polarization free energy of solvation -74.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds