Wall clock time and date at job start Tue Mar 31 2020 15:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.99583 * 2 1 4 4 C 1.54318 * 109.88284 * 238.90415 * 2 1 3 5 5 H 1.09003 * 110.72326 * 336.75229 * 4 2 1 6 6 N 1.46504 * 110.71949 * 100.02781 * 4 2 1 7 7 C 1.34773 * 119.99769 * 205.00076 * 6 4 2 8 8 O 1.21593 * 120.00413 * 359.97438 * 7 6 4 9 9 C 1.47553 * 119.99706 * 179.97438 * 7 6 4 10 10 C 1.39928 * 120.17383 * 89.72731 * 9 7 6 11 11 F 1.35100 * 120.07450 * 359.97438 * 10 9 7 12 12 C 1.38176 * 119.84605 * 179.73922 * 10 9 7 13 13 C 1.38331 * 120.21564 * 0.51280 * 12 10 9 14 14 C 1.38449 * 120.36043 * 359.76264 * 13 12 10 15 15 F 1.35095 * 119.93065 * 179.97438 * 14 13 12 16 16 C 1.38446 * 120.14156 * 359.97438 * 14 13 12 17 17 F 1.35101 * 120.10824 * 180.02562 * 16 14 13 18 18 C 1.55160 * 102.94100 * 218.38852 * 4 2 1 19 19 C 1.54909 * 101.58106 * 35.50559 * 18 4 2 20 20 N 1.47026 * 109.88078 * 121.09412 * 2 1 3 21 21 C 1.36933 * 125.65326 * 298.09502 * 20 2 1 22 22 H 1.08005 * 119.99541 * 359.97438 * 21 20 2 23 23 C 1.38813 * 120.00564 * 180.02562 * 21 20 2 24 24 N 1.31616 * 119.99514 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00305 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47103 * 60.00082 * 25 23 21 27 27 H 1.48502 * 109.47327 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47083 * 299.99999 * 25 23 21 29 29 H 1.09004 * 109.46790 * 300.35432 * 1 2 3 30 30 H 1.08999 * 109.46948 * 60.35467 * 1 2 3 31 31 H 1.08998 * 109.46799 * 180.35791 * 1 2 3 32 32 H 0.96990 * 119.99803 * 25.00022 * 6 4 2 33 33 H 1.08000 * 119.89149 * 180.25007 * 12 10 9 34 34 H 1.08002 * 119.82379 * 179.74127 * 13 12 10 35 35 H 1.09006 * 111.00068 * 153.57567 * 18 4 2 36 36 H 1.08996 * 111.00195 * 277.42551 * 18 4 2 37 37 H 1.08996 * 110.36158 * 204.14752 * 19 18 4 38 38 H 1.09002 * 110.36956 * 81.83034 * 19 18 4 39 39 H 0.97002 * 119.99999 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0549 -0.7495 -1.2427 5 1 1.3052 -1.4460 -1.6182 6 7 2.4555 0.1961 -2.2875 7 6 2.4582 -0.1883 -3.5792 8 8 2.1286 -1.3200 -3.8775 9 6 2.8612 0.7643 -4.6315 10 6 4.2026 0.8588 -5.0185 11 9 5.1339 0.0776 -4.4289 12 6 4.5716 1.7493 -6.0085 13 6 3.6213 2.5545 -6.6101 14 6 2.2925 2.4724 -6.2300 15 9 1.3717 3.2633 -6.8229 16 6 1.9054 1.5815 -5.2435 17 9 0.6085 1.5015 -4.8735 18 6 3.2877 -1.5142 -0.6923 19 6 2.8145 -1.8794 0.7368 20 7 2.0300 -0.7141 1.1840 21 6 1.8087 -0.3532 2.4862 22 1 1.2218 0.5252 2.7108 23 6 2.3394 -1.1157 3.5177 24 7 3.0550 -2.1859 3.2439 25 14 2.0380 -0.6230 5.2940 26 1 0.5780 -0.6187 5.5657 27 1 2.7061 -1.5940 6.1973 28 1 2.5897 0.7352 5.5314 29 1 -0.3633 0.5194 0.8868 30 1 -0.3633 0.5083 -0.8931 31 1 -0.3633 -1.0276 0.0064 32 1 2.7188 1.0988 -2.0495 33 1 5.6061 1.8199 -6.3105 34 1 3.9174 3.2513 -7.3803 35 1 3.4852 -2.4110 -1.2796 36 1 4.1654 -0.8688 -0.6603 37 1 3.6716 -2.0338 1.3922 38 1 2.1887 -2.7715 0.7129 39 1 3.4262 -2.7185 3.9646 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088827646.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:01 Heat of formation + Delta-G solvation = -110.340693 kcal Electronic energy + Delta-G solvation = -28051.627764 eV Core-core repulsion = 23545.892905 eV Total energy + Delta-G solvation = -4505.734859 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 2.94 seconds Orbital eigenvalues (eV) -49.96100 -49.46057 -49.02636 -40.15354 -38.74151 -37.51130 -34.16377 -32.37693 -31.56652 -30.54444 -30.38576 -28.63512 -25.62668 -24.15638 -23.96183 -23.40411 -21.13674 -20.28309 -19.89610 -18.77969 -18.36784 -18.21652 -17.13921 -16.80049 -16.78465 -16.31316 -16.01878 -15.84475 -15.38720 -14.98192 -14.94384 -14.80856 -14.41542 -14.17727 -13.96659 -13.60391 -13.41782 -12.86874 -12.68697 -12.31886 -12.28823 -12.15981 -11.98908 -11.59698 -11.17266 -10.88746 -10.86518 -10.64201 -10.54019 -10.14936 -10.03835 -9.79485 -9.68930 -9.59400 -9.17800 -8.80256 -8.66377 -6.90459 -5.67504 -3.10599 0.07548 0.20408 2.30245 2.49598 2.87025 3.16005 3.39008 3.43424 3.44740 3.47488 3.84590 3.93418 4.20571 4.33885 4.47888 4.87579 5.02819 5.14866 5.21644 5.25587 5.37578 5.39492 5.49627 5.57773 5.76668 6.03030 6.08730 6.16474 6.25782 6.31110 6.46401 6.54634 6.67103 6.82152 7.03505 7.43767 7.51864 7.59717 7.82561 8.07606 8.32568 9.18257 9.79001 10.42608 11.35886 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.021544 B = 0.003013 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.330438 B = 9290.489784 C = 9823.916854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.036 0.964 4 C 0.132 3.868 5 H 0.098 0.902 6 N -0.697 5.697 7 C 0.563 3.437 8 O -0.516 6.516 9 C -0.168 4.168 10 C 0.158 3.842 11 F -0.112 7.112 12 C -0.135 4.135 13 C -0.082 4.082 14 C 0.057 3.943 15 F -0.120 7.120 16 C 0.132 3.868 17 F -0.107 7.107 18 C -0.153 4.153 19 C 0.153 3.847 20 N -0.595 5.595 21 C -0.222 4.222 22 H 0.077 0.923 23 C -0.009 4.009 24 N -0.921 5.921 25 Si 0.915 3.085 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.285 1.285 29 H 0.055 0.945 30 H 0.038 0.962 31 H 0.052 0.948 32 H 0.401 0.599 33 H 0.161 0.839 34 H 0.162 0.838 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.110 0.890 38 H 0.016 0.984 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.295 10.722 -20.685 23.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.054 0.946 4 C 0.028 3.972 5 H 0.116 0.884 6 N -0.346 5.346 7 C 0.346 3.654 8 O -0.391 6.391 9 C -0.173 4.173 10 C 0.137 3.863 11 F -0.090 7.090 12 C -0.154 4.154 13 C -0.101 4.101 14 C 0.037 3.963 15 F -0.098 7.098 16 C 0.111 3.889 17 F -0.085 7.085 18 C -0.193 4.193 19 C 0.028 3.972 20 N -0.320 5.320 21 C -0.350 4.350 22 H 0.095 0.905 23 C -0.205 4.205 24 N -0.569 5.569 25 Si 0.745 3.255 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.212 1.212 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.236 0.764 33 H 0.179 0.821 34 H 0.180 0.820 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.128 0.872 38 H 0.034 0.966 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.046 9.790 -20.608 23.018 hybrid contribution -0.394 0.651 1.043 1.291 sum 2.651 10.441 -19.566 22.335 Atomic orbital electron populations 1.22245 0.97710 1.01507 1.00071 1.20982 0.92732 0.94762 0.86750 0.94601 1.22310 0.98061 0.90704 0.86116 0.88446 1.46046 1.66599 1.16562 1.05436 1.17546 0.78675 0.86747 0.82444 1.90855 1.47041 1.19176 1.82072 1.19983 0.92791 1.01530 1.03022 1.17310 0.84094 0.91334 0.93553 1.91633 1.63275 1.71989 1.82098 1.21042 1.01988 0.96086 0.96289 1.21038 0.89483 0.99429 1.00104 1.17455 0.87919 0.94495 0.96440 1.91578 1.64907 1.71415 1.81934 1.17235 0.79323 0.96490 0.95856 1.91629 1.32051 1.94881 1.89986 1.23425 0.96587 0.99371 0.99899 1.21958 0.97431 0.88420 0.89365 1.44475 1.59316 1.28186 1.00032 1.18977 1.27524 1.08068 0.80468 0.90481 1.24787 1.00313 0.97317 0.98074 1.69778 1.39134 1.17649 1.30349 0.86151 0.77665 0.77424 0.84220 1.21206 1.21574 1.21168 0.92572 0.94277 0.92846 0.76422 0.82112 0.82043 0.91836 0.91795 0.87210 0.96633 0.93601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.14 37.16 0.34 -2.58 16 2 C 0.16 3.12 3.48 -66.95 -0.23 2.89 16 3 H 0.04 0.70 7.72 -51.93 -0.40 0.30 16 4 C 0.13 2.42 2.84 -66.09 -0.19 2.23 16 5 H 0.10 1.92 7.26 -51.93 -0.38 1.54 16 6 N -0.70 -10.61 5.17 -53.06 -0.27 -10.88 16 7 C 0.56 8.85 6.54 -12.46 -0.08 8.77 16 8 O -0.52 -10.01 16.75 5.28 0.09 -9.92 16 9 C -0.17 -2.03 5.64 -104.86 -0.59 -2.62 16 10 C 0.16 1.56 7.29 -38.97 -0.28 1.28 16 11 F -0.11 -1.31 16.83 2.25 0.04 -1.27 16 12 C -0.14 -0.82 10.01 -39.57 -0.40 -1.22 16 13 C -0.08 -0.46 10.01 -39.47 -0.39 -0.85 16 14 C 0.06 0.50 7.29 -39.43 -0.29 0.21 16 15 F -0.12 -1.13 17.18 2.25 0.04 -1.09 16 16 C 0.13 1.48 7.30 -38.90 -0.28 1.20 16 17 F -0.11 -1.41 16.74 2.25 0.04 -1.37 16 18 C -0.15 -3.03 6.77 -24.58 -0.17 -3.20 16 19 C 0.15 3.71 5.89 -2.53 -0.01 3.69 16 20 N -0.59 -14.72 3.13 -162.57 -0.51 -15.23 16 21 C -0.22 -6.00 9.88 -15.06 -0.15 -6.15 16 22 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 23 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 24 N -0.92 -26.45 10.09 55.49 0.56 -25.89 16 25 Si 0.92 21.75 29.55 -169.99 -5.02 16.72 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 29 H 0.06 1.08 8.03 -51.93 -0.42 0.66 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.40 5.12 8.35 -40.82 -0.34 4.78 16 33 H 0.16 0.50 8.06 -52.49 -0.42 0.08 16 34 H 0.16 0.38 8.06 -52.49 -0.42 -0.05 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.11 2.97 5.87 -51.93 -0.31 2.66 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 344.51 15.07 5.19 5.19 Total: -1.00 -31.82 344.51 -7.02 -38.84 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -4.35 Total: 1.59 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -2.83 Total: 3.30 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -0.22 Total: -52.00 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.11 Total: -3.73 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.82 -7.02 -38.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088827646.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.496 kcal (2) G-P(sol) polarization free energy of solvation -31.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.94 seconds