Wall clock time and date at job start Tue Mar 31 2020 15:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.99583 * 2 1 4 4 C 1.54318 * 109.88284 * 238.90415 * 2 1 3 5 5 H 1.09003 * 110.72326 * 336.75229 * 4 2 1 6 6 N 1.46504 * 110.71949 * 100.02781 * 4 2 1 7 7 C 1.34773 * 119.99769 * 205.00076 * 6 4 2 8 8 O 1.21593 * 120.00413 * 359.97438 * 7 6 4 9 9 C 1.47553 * 119.99706 * 179.97438 * 7 6 4 10 10 C 1.39928 * 120.17383 * 89.72731 * 9 7 6 11 11 F 1.35100 * 120.07450 * 359.97438 * 10 9 7 12 12 C 1.38176 * 119.84605 * 179.73922 * 10 9 7 13 13 C 1.38331 * 120.21564 * 0.51280 * 12 10 9 14 14 C 1.38449 * 120.36043 * 359.76264 * 13 12 10 15 15 F 1.35095 * 119.93065 * 179.97438 * 14 13 12 16 16 C 1.38446 * 120.14156 * 359.97438 * 14 13 12 17 17 F 1.35101 * 120.10824 * 180.02562 * 16 14 13 18 18 C 1.55160 * 102.94100 * 218.38852 * 4 2 1 19 19 C 1.54909 * 101.58106 * 35.50559 * 18 4 2 20 20 N 1.47026 * 109.88078 * 121.09412 * 2 1 3 21 21 C 1.36933 * 125.65326 * 298.09502 * 20 2 1 22 22 H 1.08005 * 119.99541 * 359.97438 * 21 20 2 23 23 C 1.38813 * 120.00564 * 180.02562 * 21 20 2 24 24 N 1.31616 * 119.99514 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00305 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47103 * 60.00082 * 25 23 21 27 27 H 1.48502 * 109.47327 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47083 * 299.99999 * 25 23 21 29 29 H 1.09004 * 109.46790 * 300.35432 * 1 2 3 30 30 H 1.08999 * 109.46948 * 60.35467 * 1 2 3 31 31 H 1.08998 * 109.46799 * 180.35791 * 1 2 3 32 32 H 0.96990 * 119.99803 * 25.00022 * 6 4 2 33 33 H 1.08000 * 119.89149 * 180.25007 * 12 10 9 34 34 H 1.08002 * 119.82379 * 179.74127 * 13 12 10 35 35 H 1.09006 * 111.00068 * 153.57567 * 18 4 2 36 36 H 1.08996 * 111.00195 * 277.42551 * 18 4 2 37 37 H 1.08996 * 110.36158 * 204.14752 * 19 18 4 38 38 H 1.09002 * 110.36956 * 81.83034 * 19 18 4 39 39 H 0.97002 * 119.99999 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0549 -0.7495 -1.2427 5 1 1.3052 -1.4460 -1.6182 6 7 2.4555 0.1961 -2.2875 7 6 2.4582 -0.1883 -3.5792 8 8 2.1286 -1.3200 -3.8775 9 6 2.8612 0.7643 -4.6315 10 6 4.2026 0.8588 -5.0185 11 9 5.1339 0.0776 -4.4289 12 6 4.5716 1.7493 -6.0085 13 6 3.6213 2.5545 -6.6101 14 6 2.2925 2.4724 -6.2300 15 9 1.3717 3.2633 -6.8229 16 6 1.9054 1.5815 -5.2435 17 9 0.6085 1.5015 -4.8735 18 6 3.2877 -1.5142 -0.6923 19 6 2.8145 -1.8794 0.7368 20 7 2.0300 -0.7141 1.1840 21 6 1.8087 -0.3532 2.4862 22 1 1.2218 0.5252 2.7108 23 6 2.3394 -1.1157 3.5177 24 7 3.0550 -2.1859 3.2439 25 14 2.0380 -0.6230 5.2940 26 1 0.5780 -0.6187 5.5657 27 1 2.7061 -1.5940 6.1973 28 1 2.5897 0.7352 5.5314 29 1 -0.3633 0.5194 0.8868 30 1 -0.3633 0.5083 -0.8931 31 1 -0.3633 -1.0276 0.0064 32 1 2.7188 1.0988 -2.0495 33 1 5.6061 1.8199 -6.3105 34 1 3.9174 3.2513 -7.3803 35 1 3.4852 -2.4110 -1.2796 36 1 4.1654 -0.8688 -0.6603 37 1 3.6716 -2.0338 1.3922 38 1 2.1887 -2.7715 0.7129 39 1 3.4262 -2.7185 3.9646 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088827646.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:58 Heat of formation + Delta-G solvation = -130.290205 kcal Electronic energy + Delta-G solvation = -28052.492840 eV Core-core repulsion = 23545.892905 eV Total energy + Delta-G solvation = -4506.599935 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 2.64 seconds Orbital eigenvalues (eV) -50.75147 -50.26032 -49.79993 -41.37444 -39.76826 -38.96369 -35.75980 -34.02154 -32.61016 -32.07972 -31.22807 -30.42087 -26.99184 -25.93760 -25.22657 -24.10734 -22.46752 -21.84340 -21.54836 -19.66515 -19.17805 -19.11429 -18.75070 -18.03215 -17.67290 -17.47044 -17.02787 -16.75727 -16.63038 -16.18917 -15.87618 -15.78694 -15.73004 -15.59304 -15.46015 -15.05448 -14.44030 -14.16252 -14.04331 -13.80907 -13.46709 -13.29814 -13.04272 -12.98368 -12.94753 -12.73701 -12.63209 -12.32808 -12.20129 -12.04954 -11.61267 -11.52389 -11.34476 -10.73491 -10.42990 -10.24710 -9.87273 -8.92586 -7.75784 -5.21270 -0.61543 -0.46209 1.10988 1.48345 1.51334 1.57398 1.72189 1.93295 2.34587 2.50863 2.76589 3.12417 3.20982 3.34773 3.46567 3.57888 3.60919 3.77669 3.86952 4.09580 4.15215 4.43283 4.44699 4.56231 4.58679 4.59500 4.70829 4.74690 4.81634 4.85017 4.96629 5.03749 5.25842 5.41314 5.46853 5.49169 5.57059 5.77717 6.21446 6.28655 6.85776 7.09730 7.76777 8.40366 9.26142 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.021544 B = 0.003013 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.330438 B = 9290.489784 C = 9823.916854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.152 3.848 3 H 0.053 0.947 4 C 0.148 3.852 5 H 0.083 0.917 6 N -0.688 5.688 7 C 0.565 3.435 8 O -0.561 6.561 9 C -0.188 4.188 10 C 0.145 3.855 11 F -0.127 7.127 12 C -0.108 4.108 13 C -0.051 4.051 14 C 0.058 3.942 15 F -0.124 7.124 16 C 0.111 3.889 17 F -0.128 7.128 18 C -0.138 4.138 19 C 0.159 3.841 20 N -0.613 5.613 21 C -0.231 4.231 22 H 0.085 0.915 23 C -0.067 4.067 24 N -0.950 5.950 25 Si 0.980 3.020 26 H -0.280 1.280 27 H -0.296 1.296 28 H -0.274 1.274 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.037 0.963 32 H 0.415 0.585 33 H 0.202 0.798 34 H 0.208 0.792 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.080 0.920 38 H -0.013 1.013 39 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.312 13.641 -22.870 26.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.045 3.955 3 H 0.070 0.930 4 C 0.043 3.957 5 H 0.101 0.899 6 N -0.338 5.338 7 C 0.350 3.650 8 O -0.439 6.439 9 C -0.193 4.193 10 C 0.125 3.875 11 F -0.105 7.105 12 C -0.126 4.126 13 C -0.069 4.069 14 C 0.038 3.962 15 F -0.103 7.103 16 C 0.090 3.910 17 F -0.106 7.106 18 C -0.178 4.178 19 C 0.033 3.967 20 N -0.338 5.338 21 C -0.359 4.359 22 H 0.103 0.897 23 C -0.259 4.259 24 N -0.600 5.600 25 Si 0.808 3.192 26 H -0.207 1.207 27 H -0.223 1.223 28 H -0.200 1.200 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.252 0.748 33 H 0.220 0.780 34 H 0.225 0.775 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.005 0.995 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.054 12.770 -22.821 26.464 hybrid contribution -0.694 -0.202 1.609 1.764 sum 3.360 12.568 -21.213 24.884 Atomic orbital electron populations 1.22130 0.96520 1.00833 1.01172 1.21162 0.93549 0.95062 0.85677 0.92967 1.21878 0.96775 0.90757 0.86320 0.89866 1.45860 1.66399 1.16608 1.04958 1.18080 0.77254 0.86788 0.82909 1.90823 1.48864 1.21413 1.82801 1.19664 0.94270 1.02259 1.03150 1.17636 0.82909 0.92264 0.94713 1.91600 1.63551 1.72698 1.82635 1.21490 1.03971 0.93507 0.93639 1.21564 0.87416 0.98563 0.99403 1.17655 0.89049 0.93784 0.95726 1.91575 1.65460 1.71384 1.81840 1.17449 0.78403 0.97847 0.97312 1.91568 1.33416 1.95192 1.90437 1.23217 0.97408 0.99971 0.97156 1.21672 0.95816 0.87803 0.91381 1.44703 1.59799 1.28537 1.00797 1.19359 1.26865 1.08062 0.81652 0.89692 1.25616 1.00703 0.97619 1.01979 1.70026 1.40342 1.18741 1.30898 0.85129 0.77500 0.77166 0.79381 1.20661 1.22277 1.20033 0.93073 0.91486 0.94401 0.74766 0.78049 0.77466 0.91430 0.90872 0.90169 0.99541 0.94359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.47 9.14 71.98 0.66 -4.81 16 2 C 0.15 6.08 3.48 45.34 0.16 6.24 16 3 H 0.05 1.95 7.72 -2.39 -0.02 1.93 16 4 C 0.15 5.48 2.84 46.18 0.13 5.61 16 5 H 0.08 3.37 7.26 -2.39 -0.02 3.35 16 6 N -0.69 -20.69 5.17 -440.05 -2.28 -22.97 16 7 C 0.56 17.80 6.54 86.70 0.57 18.37 16 8 O -0.56 -22.34 16.75 -4.01 -0.07 -22.40 16 9 C -0.19 -4.37 5.64 -20.02 -0.11 -4.48 16 10 C 0.15 2.53 7.29 22.66 0.17 2.69 16 11 F -0.13 -2.76 16.83 44.97 0.76 -2.01 16 12 C -0.11 -0.78 10.01 22.28 0.22 -0.56 16 13 C -0.05 -0.30 10.01 22.34 0.22 -0.08 16 14 C 0.06 0.83 7.29 22.37 0.16 1.00 16 15 F -0.12 -2.01 17.18 44.97 0.77 -1.23 16 16 C 0.11 2.35 7.30 22.71 0.17 2.52 16 17 F -0.13 -3.36 16.74 44.97 0.75 -2.61 16 18 C -0.14 -5.57 6.77 31.99 0.22 -5.35 16 19 C 0.16 8.02 5.89 86.85 0.51 8.53 16 20 N -0.61 -30.91 3.13 -668.26 -2.09 -33.00 16 21 C -0.23 -12.58 9.88 84.03 0.83 -11.74 16 22 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 23 C -0.07 -3.74 5.49 84.86 0.47 -3.27 16 24 N -0.95 -56.49 10.09 21.65 0.22 -56.27 16 25 Si 0.98 45.21 29.55 68.60 2.03 47.23 16 26 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 27 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 28 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 29 H 0.05 1.93 8.03 -2.38 -0.02 1.91 16 30 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.42 10.15 8.35 -92.72 -0.77 9.37 16 33 H 0.20 -0.07 8.06 -2.91 -0.02 -0.10 16 34 H 0.21 -0.56 8.06 -2.91 -0.02 -0.58 16 35 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 36 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 37 H 0.08 4.55 5.87 -2.39 -0.01 4.54 16 38 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 39 H 0.25 14.34 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -73.25 344.51 4.80 -68.45 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 0.34 Total: 10.16 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 4.37 Total: 14.65 kcal Atomic # 7 Polarization: -108.09 SS G_CDS: -4.15 Total: -112.24 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.07 Total: -22.40 kcal Atomic # 9 Polarization: -8.13 SS G_CDS: 2.28 Total: -5.85 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -73.25 4.80 -68.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088827646.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.841 kcal (2) G-P(sol) polarization free energy of solvation -73.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.64 seconds