Wall clock time and date at job start Tue Mar 31 2020 15:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.00066 * 2 1 4 4 C 1.54327 * 109.88475 * 238.89941 * 2 1 3 5 5 H 1.09000 * 110.86856 * 336.83032 * 4 2 1 6 6 N 1.46498 * 110.71986 * 100.02739 * 4 2 1 7 7 C 1.34776 * 120.00533 * 199.97811 * 6 4 2 8 8 O 1.21606 * 119.99205 * 0.02562 * 7 6 4 9 9 C 1.47417 * 120.00696 * 180.02562 * 7 6 4 10 10 C 1.39980 * 120.16149 * 89.71558 * 9 7 6 11 11 F 1.35103 * 120.08152 * 0.03590 * 10 9 7 12 12 C 1.38099 * 119.82848 * 179.76997 * 10 9 7 13 13 C 1.38597 * 120.16900 * 0.53976 * 12 10 9 14 14 F 1.35097 * 119.83752 * 179.72020 * 13 12 10 15 15 C 1.38599 * 120.32707 * 359.69270 * 13 12 10 16 16 C 1.38096 * 120.16511 * 0.04937 * 15 13 12 17 17 F 1.35107 * 120.08526 * 179.97438 * 16 15 13 18 18 C 1.55155 * 102.94571 * 218.39122 * 4 2 1 19 19 C 1.54912 * 101.57968 * 35.50272 * 18 4 2 20 20 N 1.47024 * 109.88112 * 121.09472 * 2 1 3 21 21 C 1.36941 * 125.64618 * 298.62174 * 20 2 1 22 22 H 1.08001 * 120.00063 * 359.71616 * 21 20 2 23 23 C 1.38810 * 119.99930 * 179.71580 * 21 20 2 24 24 N 1.31617 * 120.00219 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00125 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47105 * 89.99764 * 25 23 21 27 27 H 1.48498 * 109.47318 * 210.00148 * 25 23 21 28 28 H 1.48496 * 109.46962 * 329.99931 * 25 23 21 29 29 H 1.08993 * 109.46793 * 300.36247 * 1 2 3 30 30 H 1.09005 * 109.46593 * 60.35810 * 1 2 3 31 31 H 1.08995 * 109.46984 * 180.35793 * 1 2 3 32 32 H 0.97001 * 119.99810 * 19.97892 * 6 4 2 33 33 H 1.08009 * 119.91534 * 180.25784 * 12 10 9 34 34 H 1.07999 * 119.91816 * 180.02562 * 15 13 12 35 35 H 1.08997 * 111.00368 * 277.43464 * 18 4 2 36 36 H 1.08989 * 111.00661 * 153.57593 * 18 4 2 37 37 H 1.09002 * 110.36496 * 204.15483 * 19 18 4 38 38 H 1.08995 * 110.46379 * 81.87851 * 19 18 4 39 39 H 0.97004 * 120.00482 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2427 5 1 1.3065 -1.4459 -1.6210 6 7 2.4556 0.1959 -2.2875 7 6 2.5560 -0.2161 -3.5668 8 8 2.3136 -1.3727 -3.8538 9 6 2.9598 0.7352 -4.6181 10 6 4.3135 0.9044 -4.9314 11 9 5.2551 0.1953 -4.2711 12 6 4.6837 1.7939 -5.9207 13 6 3.7195 2.5263 -6.5952 14 9 4.0896 3.3988 -7.5580 15 6 2.3775 2.3677 -6.2872 16 6 1.9917 1.4781 -5.3039 17 9 0.6831 1.3251 -5.0046 18 6 3.2877 -1.5143 -0.6923 19 6 2.8145 -1.8794 0.7369 20 7 2.0300 -0.7141 1.1840 21 6 1.8001 -0.3588 2.4863 22 1 1.2092 0.5169 2.7110 23 6 2.3264 -1.1242 3.5178 24 7 3.0469 -2.1911 3.2441 25 14 2.0123 -0.6401 5.2944 26 1 0.7698 -1.2968 5.7741 27 1 3.1572 -1.0726 6.1353 28 1 1.8600 0.8342 5.3861 29 1 -0.3633 0.5194 0.8867 30 1 -0.3633 0.5083 -0.8932 31 1 -0.3633 -1.0276 0.0064 32 1 2.6486 1.1185 -2.0586 33 1 5.7276 1.9225 -6.1665 34 1 1.6317 2.9415 -6.8172 35 1 4.1654 -0.8689 -0.6602 36 1 3.4852 -2.4111 -1.2794 37 1 3.6716 -2.0338 1.3924 38 1 2.1891 -2.7719 0.7149 39 1 3.4145 -2.7263 3.9649 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088830683.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:10 Heat of formation + Delta-G solvation = -111.757207 kcal Electronic energy + Delta-G solvation = -27919.346342 eV Core-core repulsion = 23413.550058 eV Total energy + Delta-G solvation = -4505.796284 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -49.66199 -49.56215 -49.52374 -40.11256 -38.67137 -37.48175 -34.14382 -32.25952 -31.23307 -31.20402 -30.38315 -28.59335 -25.36604 -24.06448 -23.84311 -23.74252 -21.11243 -20.23425 -19.88164 -19.11847 -18.40857 -17.88355 -16.96353 -16.74150 -16.48097 -16.46136 -16.13576 -15.81212 -15.78943 -15.51038 -14.88684 -14.81142 -14.43297 -14.28277 -13.97368 -13.51004 -13.03528 -12.85648 -12.80455 -12.51597 -12.21581 -12.15232 -12.00330 -11.60417 -11.16842 -10.89262 -10.87452 -10.59564 -10.52458 -10.11857 -10.01584 -9.79356 -9.59692 -9.52273 -9.42962 -8.79556 -8.66611 -6.90492 -5.67864 -3.10907 0.05384 0.24647 2.35880 2.47748 2.88318 3.07827 3.38355 3.43319 3.45279 3.57165 3.62181 4.13594 4.17811 4.33766 4.47891 5.02090 5.04472 5.10932 5.13469 5.24991 5.30893 5.39094 5.49414 5.59052 5.76203 6.01369 6.08140 6.18081 6.25334 6.30332 6.47592 6.54836 6.68363 6.81626 7.03557 7.45438 7.53042 7.59895 7.82737 8.10961 8.32416 9.17951 9.78806 10.42333 11.35639 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.022702 B = 0.002879 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.091584 B = 9723.554749 C =10041.845123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.037 0.963 4 C 0.133 3.867 5 H 0.095 0.905 6 N -0.699 5.699 7 C 0.564 3.436 8 O -0.517 6.517 9 C -0.206 4.206 10 C 0.198 3.802 11 F -0.107 7.107 12 C -0.203 4.203 13 C 0.177 3.823 14 F -0.118 7.118 15 C -0.204 4.204 16 C 0.197 3.803 17 F -0.109 7.109 18 C -0.153 4.153 19 C 0.153 3.847 20 N -0.595 5.595 21 C -0.222 4.222 22 H 0.078 0.922 23 C -0.010 4.010 24 N -0.920 5.920 25 Si 0.915 3.085 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.281 1.281 29 H 0.055 0.945 30 H 0.038 0.962 31 H 0.052 0.948 32 H 0.400 0.600 33 H 0.163 0.837 34 H 0.163 0.837 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.109 0.891 38 H 0.016 0.984 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.735 10.722 -20.322 23.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.054 0.946 4 C 0.029 3.971 5 H 0.113 0.887 6 N -0.348 5.348 7 C 0.347 3.653 8 O -0.393 6.393 9 C -0.211 4.211 10 C 0.178 3.822 11 F -0.085 7.085 12 C -0.223 4.223 13 C 0.157 3.843 14 F -0.096 7.096 15 C -0.223 4.223 16 C 0.176 3.824 17 F -0.087 7.087 18 C -0.192 4.192 19 C 0.028 3.972 20 N -0.320 5.320 21 C -0.350 4.350 22 H 0.096 0.904 23 C -0.205 4.205 24 N -0.569 5.569 25 Si 0.745 3.255 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.207 1.207 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.235 0.765 33 H 0.181 0.819 34 H 0.180 0.820 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.127 0.873 38 H 0.034 0.966 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.611 9.791 -20.258 22.558 hybrid contribution -0.145 0.666 0.946 1.166 sum 1.466 10.457 -19.312 22.010 Atomic orbital electron populations 1.22248 0.97729 1.01506 1.00066 1.20976 0.92683 0.94773 0.86751 0.94573 1.22284 0.97952 0.90683 0.86135 0.88722 1.46074 1.67857 1.14384 1.06501 1.17537 0.78408 0.87085 0.82318 1.90853 1.48827 1.17685 1.81931 1.20117 0.92694 1.04089 1.04207 1.16790 0.83882 0.90550 0.91014 1.91651 1.62745 1.75636 1.78493 1.21015 1.02101 1.00037 0.99137 1.16897 0.91468 0.88784 0.87160 1.91592 1.92015 1.66047 1.59968 1.20995 0.96251 1.03431 1.01652 1.16770 0.78052 0.93881 0.93660 1.91636 1.31359 1.93972 1.91742 1.23410 0.96591 0.99423 0.99814 1.21949 0.97410 0.88391 0.89407 1.44497 1.59184 1.28310 1.00024 1.19017 1.27317 1.08199 0.80437 0.90427 1.24790 1.00300 0.97355 0.98076 1.69795 1.39071 1.17769 1.30226 0.86076 0.77266 0.77717 0.84435 1.21630 1.21665 1.20707 0.92575 0.94269 0.92852 0.76489 0.81922 0.81961 0.91828 0.91798 0.87293 0.96646 0.93652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.14 37.16 0.34 -2.52 16 2 C 0.16 3.09 3.48 -66.95 -0.23 2.86 16 3 H 0.04 0.69 7.69 -51.93 -0.40 0.29 16 4 C 0.13 2.42 2.76 -66.10 -0.18 2.24 16 5 H 0.09 1.83 7.41 -51.93 -0.38 1.45 16 6 N -0.70 -10.44 5.20 -53.11 -0.28 -10.72 16 7 C 0.56 8.68 6.53 -12.52 -0.08 8.60 16 8 O -0.52 -9.92 16.83 5.27 0.09 -9.83 16 9 C -0.21 -2.42 5.64 -104.86 -0.59 -3.01 16 10 C 0.20 2.03 7.29 -38.98 -0.28 1.75 16 11 F -0.11 -1.29 16.83 2.25 0.04 -1.25 16 12 C -0.20 -1.51 9.98 -39.50 -0.39 -1.91 16 13 C 0.18 1.26 7.30 -39.32 -0.29 0.97 16 14 F -0.12 -0.84 17.26 2.25 0.04 -0.80 16 15 C -0.20 -1.47 9.99 -39.50 -0.39 -1.87 16 16 C 0.20 1.96 7.29 -38.98 -0.28 1.67 16 17 F -0.11 -1.23 16.83 2.25 0.04 -1.20 16 18 C -0.15 -3.03 6.77 -24.58 -0.17 -3.20 16 19 C 0.15 3.71 5.88 -2.53 -0.01 3.70 16 20 N -0.59 -14.65 3.13 -162.57 -0.51 -15.16 16 21 C -0.22 -5.95 9.86 -15.06 -0.15 -6.10 16 22 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 23 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 24 N -0.92 -26.43 10.09 55.49 0.56 -25.87 16 25 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 29 H 0.06 1.06 8.02 -51.93 -0.42 0.64 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.40 5.00 8.30 -40.82 -0.34 4.66 16 33 H 0.16 0.85 8.06 -52.48 -0.42 0.43 16 34 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.24 8.14 -51.94 -0.42 0.82 16 37 H 0.11 2.95 5.89 -51.93 -0.31 2.65 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 344.69 15.07 5.19 5.19 Total: -1.00 -31.04 344.69 -7.02 -38.05 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -4.35 Total: 2.07 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -2.82 Total: 2.82 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.22 Total: -51.75 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.11 Total: -3.24 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.04 -7.02 -38.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088830683.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.703 kcal (2) G-P(sol) polarization free energy of solvation -31.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds