Wall clock time and date at job start Tue Mar 31 2020 15:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.00066 * 2 1 4 4 C 1.54327 * 109.88475 * 238.89941 * 2 1 3 5 5 H 1.09000 * 110.86856 * 336.83032 * 4 2 1 6 6 N 1.46498 * 110.71986 * 100.02739 * 4 2 1 7 7 C 1.34776 * 120.00533 * 199.97811 * 6 4 2 8 8 O 1.21606 * 119.99205 * 0.02562 * 7 6 4 9 9 C 1.47417 * 120.00696 * 180.02562 * 7 6 4 10 10 C 1.39980 * 120.16149 * 89.71558 * 9 7 6 11 11 F 1.35103 * 120.08152 * 0.03590 * 10 9 7 12 12 C 1.38099 * 119.82848 * 179.76997 * 10 9 7 13 13 C 1.38597 * 120.16900 * 0.53976 * 12 10 9 14 14 F 1.35097 * 119.83752 * 179.72020 * 13 12 10 15 15 C 1.38599 * 120.32707 * 359.69270 * 13 12 10 16 16 C 1.38096 * 120.16511 * 0.04937 * 15 13 12 17 17 F 1.35107 * 120.08526 * 179.97438 * 16 15 13 18 18 C 1.55155 * 102.94571 * 218.39122 * 4 2 1 19 19 C 1.54912 * 101.57968 * 35.50272 * 18 4 2 20 20 N 1.47024 * 109.88112 * 121.09472 * 2 1 3 21 21 C 1.36941 * 125.64618 * 298.62174 * 20 2 1 22 22 H 1.08001 * 120.00063 * 359.71616 * 21 20 2 23 23 C 1.38810 * 119.99930 * 179.71580 * 21 20 2 24 24 N 1.31617 * 120.00219 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00125 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47105 * 89.99764 * 25 23 21 27 27 H 1.48498 * 109.47318 * 210.00148 * 25 23 21 28 28 H 1.48496 * 109.46962 * 329.99931 * 25 23 21 29 29 H 1.08993 * 109.46793 * 300.36247 * 1 2 3 30 30 H 1.09005 * 109.46593 * 60.35810 * 1 2 3 31 31 H 1.08995 * 109.46984 * 180.35793 * 1 2 3 32 32 H 0.97001 * 119.99810 * 19.97892 * 6 4 2 33 33 H 1.08009 * 119.91534 * 180.25784 * 12 10 9 34 34 H 1.07999 * 119.91816 * 180.02562 * 15 13 12 35 35 H 1.08997 * 111.00368 * 277.43464 * 18 4 2 36 36 H 1.08989 * 111.00661 * 153.57593 * 18 4 2 37 37 H 1.09002 * 110.36496 * 204.15483 * 19 18 4 38 38 H 1.08995 * 110.46379 * 81.87851 * 19 18 4 39 39 H 0.97004 * 120.00482 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2427 5 1 1.3065 -1.4459 -1.6210 6 7 2.4556 0.1959 -2.2875 7 6 2.5560 -0.2161 -3.5668 8 8 2.3136 -1.3727 -3.8538 9 6 2.9598 0.7352 -4.6181 10 6 4.3135 0.9044 -4.9314 11 9 5.2551 0.1953 -4.2711 12 6 4.6837 1.7939 -5.9207 13 6 3.7195 2.5263 -6.5952 14 9 4.0896 3.3988 -7.5580 15 6 2.3775 2.3677 -6.2872 16 6 1.9917 1.4781 -5.3039 17 9 0.6831 1.3251 -5.0046 18 6 3.2877 -1.5143 -0.6923 19 6 2.8145 -1.8794 0.7369 20 7 2.0300 -0.7141 1.1840 21 6 1.8001 -0.3588 2.4863 22 1 1.2092 0.5169 2.7110 23 6 2.3264 -1.1242 3.5178 24 7 3.0469 -2.1911 3.2441 25 14 2.0123 -0.6401 5.2944 26 1 0.7698 -1.2968 5.7741 27 1 3.1572 -1.0726 6.1353 28 1 1.8600 0.8342 5.3861 29 1 -0.3633 0.5194 0.8867 30 1 -0.3633 0.5083 -0.8932 31 1 -0.3633 -1.0276 0.0064 32 1 2.6486 1.1185 -2.0586 33 1 5.7276 1.9225 -6.1665 34 1 1.6317 2.9415 -6.8172 35 1 4.1654 -0.8689 -0.6602 36 1 3.4852 -2.4111 -1.2794 37 1 3.6716 -2.0338 1.3924 38 1 2.1891 -2.7719 0.7149 39 1 3.4145 -2.7263 3.9649 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088830683.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:07 Heat of formation + Delta-G solvation = -130.548045 kcal Electronic energy + Delta-G solvation = -27920.161174 eV Core-core repulsion = 23413.550058 eV Total energy + Delta-G solvation = -4506.611116 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 3.33 seconds Orbital eigenvalues (eV) -50.36297 -50.34255 -50.23505 -41.32865 -39.72597 -38.90939 -35.72728 -33.97823 -32.30997 -32.00170 -31.86789 -30.35676 -26.82982 -25.90171 -24.93861 -24.43845 -22.46197 -21.76452 -21.52036 -19.86064 -19.14710 -19.05499 -18.69695 -17.83339 -17.35549 -17.23771 -17.12193 -16.72389 -16.62189 -16.49157 -16.33957 -15.86860 -15.68595 -15.60133 -15.46576 -15.12716 -14.42345 -14.04926 -13.91122 -13.80584 -13.52211 -13.26556 -13.12086 -12.95348 -12.91923 -12.76462 -12.62531 -12.28507 -12.17326 -11.98268 -11.59509 -11.52606 -11.31163 -10.73850 -10.22228 -10.18532 -10.17372 -8.91459 -7.75293 -5.20528 -0.67221 -0.41106 1.17576 1.48807 1.50386 1.58757 1.73244 1.92640 2.22400 2.51396 2.87639 2.93887 3.24744 3.35922 3.47989 3.56884 3.64815 3.79070 3.90097 4.14161 4.35657 4.38346 4.40968 4.44308 4.46655 4.58508 4.60824 4.73999 4.77719 4.88665 4.99698 5.06272 5.29564 5.36736 5.48584 5.52059 5.58250 5.78609 6.26636 6.29274 6.91408 7.10361 7.77761 8.41254 9.26975 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.022702 B = 0.002879 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.091584 B = 9723.554749 C =10041.845123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.153 3.847 3 H 0.054 0.946 4 C 0.150 3.850 5 H 0.083 0.917 6 N -0.689 5.689 7 C 0.566 3.434 8 O -0.561 6.561 9 C -0.223 4.223 10 C 0.186 3.814 11 F -0.123 7.123 12 C -0.184 4.184 13 C 0.189 3.811 14 F -0.111 7.111 15 C -0.182 4.182 16 C 0.189 3.811 17 F -0.120 7.120 18 C -0.139 4.139 19 C 0.159 3.841 20 N -0.613 5.613 21 C -0.227 4.227 22 H 0.087 0.913 23 C -0.068 4.068 24 N -0.951 5.951 25 Si 0.979 3.021 26 H -0.290 1.290 27 H -0.296 1.296 28 H -0.266 1.266 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.036 0.964 32 H 0.415 0.585 33 H 0.189 0.811 34 H 0.191 0.809 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.078 0.922 38 H -0.013 1.013 39 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.625 13.612 -22.254 26.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.046 3.954 3 H 0.072 0.928 4 C 0.045 3.955 5 H 0.101 0.899 6 N -0.340 5.340 7 C 0.351 3.649 8 O -0.440 6.440 9 C -0.228 4.228 10 C 0.166 3.834 11 F -0.101 7.101 12 C -0.203 4.203 13 C 0.169 3.831 14 F -0.089 7.089 15 C -0.201 4.201 16 C 0.169 3.831 17 F -0.098 7.098 18 C -0.178 4.178 19 C 0.034 3.966 20 N -0.339 5.339 21 C -0.356 4.356 22 H 0.104 0.896 23 C -0.261 4.261 24 N -0.601 5.601 25 Si 0.808 3.192 26 H -0.217 1.217 27 H -0.223 1.223 28 H -0.191 1.191 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.252 0.748 33 H 0.206 0.794 34 H 0.208 0.792 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.005 0.995 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.492 12.747 -22.221 25.661 hybrid contribution -0.104 -0.170 1.424 1.438 sum 1.387 12.577 -20.797 24.344 Atomic orbital electron populations 1.22131 0.96286 1.00867 1.01358 1.21172 0.93678 0.95052 0.85522 0.92843 1.21856 0.96520 0.90759 0.86400 0.89893 1.45884 1.67608 1.14508 1.05955 1.18043 0.77004 0.87102 0.82745 1.90827 1.50612 1.19866 1.82650 1.19864 0.93946 1.04795 1.04206 1.16894 0.82989 0.91514 0.92053 1.91614 1.63154 1.76254 1.79048 1.21198 1.03555 0.98224 0.97322 1.16846 0.91276 0.88258 0.86708 1.91624 1.91942 1.65735 1.59637 1.21198 0.96990 1.01914 1.00021 1.16832 0.77258 0.94603 0.94447 1.91610 1.32048 1.94177 1.91984 1.23200 0.97514 0.99954 0.97145 1.21650 0.95774 0.87841 0.91351 1.44729 1.59669 1.28630 1.00855 1.19400 1.26491 1.08120 0.81604 0.89552 1.25618 1.00780 0.97697 1.01972 1.70042 1.40386 1.18911 1.30769 0.85063 0.76479 0.78056 0.79635 1.21744 1.22319 1.19079 0.93112 0.91071 0.94451 0.74763 0.79391 0.79167 0.91147 0.91608 0.90403 0.99547 0.94424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.23 9.14 71.98 0.66 -4.57 16 2 C 0.15 5.93 3.48 45.34 0.16 6.08 16 3 H 0.05 1.93 7.69 -2.39 -0.02 1.91 16 4 C 0.15 5.42 2.76 46.18 0.13 5.54 16 5 H 0.08 3.25 7.41 -2.39 -0.02 3.23 16 6 N -0.69 -19.94 5.20 -440.18 -2.29 -22.23 16 7 C 0.57 17.14 6.53 86.66 0.57 17.71 16 8 O -0.56 -21.74 16.83 -4.05 -0.07 -21.81 16 9 C -0.22 -4.92 5.64 -20.02 -0.11 -5.03 16 10 C 0.19 3.46 7.29 22.66 0.17 3.63 16 11 F -0.12 -2.82 16.83 44.97 0.76 -2.07 16 12 C -0.18 -2.12 9.98 22.32 0.22 -1.90 16 13 C 0.19 1.95 7.30 22.44 0.16 2.11 16 14 F -0.11 -1.10 17.26 44.97 0.78 -0.33 16 15 C -0.18 -1.96 9.99 22.32 0.22 -1.74 16 16 C 0.19 3.33 7.29 22.66 0.17 3.49 16 17 F -0.12 -2.50 16.83 44.97 0.76 -1.75 16 18 C -0.14 -5.61 6.77 31.99 0.22 -5.39 16 19 C 0.16 8.03 5.88 86.86 0.51 8.54 16 20 N -0.61 -30.62 3.13 -668.24 -2.09 -32.71 16 21 C -0.23 -12.29 9.86 84.03 0.83 -11.46 16 22 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 23 C -0.07 -3.82 5.49 84.86 0.47 -3.35 16 24 N -0.95 -56.58 10.09 21.65 0.22 -56.36 16 25 Si 0.98 45.10 29.55 68.60 2.03 47.12 16 26 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 27 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 28 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 29 H 0.05 1.84 8.02 -2.39 -0.02 1.82 16 30 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 32 H 0.42 9.63 8.30 -92.71 -0.77 8.86 16 33 H 0.19 1.20 8.06 -2.91 -0.02 1.18 16 34 H 0.19 0.99 8.06 -2.91 -0.02 0.97 16 35 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 36 H 0.07 2.62 8.14 -2.39 -0.02 2.61 16 37 H 0.08 4.44 5.89 -2.39 -0.01 4.42 16 38 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 39 H 0.25 14.29 8.31 -92.70 -0.77 13.52 16 Total: -1.00 -69.41 344.69 4.79 -64.62 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.34 Total: 11.84 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: 4.36 Total: 13.66 kcal Atomic # 7 Polarization: -107.14 SS G_CDS: -4.16 Total: -111.30 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.07 Total: -21.81 kcal Atomic # 9 Polarization: -6.43 SS G_CDS: 2.29 Total: -4.14 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -69.41 4.79 -64.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088830683.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.926 kcal (2) G-P(sol) polarization free energy of solvation -69.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.33 seconds