Wall clock time and date at job start Tue Mar 31 2020 16:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47188 * 2 1 4 4 C 1.53006 * 109.46811 * 119.99756 * 2 1 3 5 5 C 1.52999 * 109.46626 * 184.99727 * 4 2 1 6 6 N 1.46506 * 109.46691 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99880 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99750 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00141 * 180.02562 * 7 6 5 10 10 S 1.81003 * 109.47226 * 180.02562 * 9 7 6 11 11 C 1.76206 * 99.99901 * 179.97438 * 10 9 7 12 12 H 1.07998 * 119.99973 * 0.02562 * 11 10 9 13 13 C 1.38795 * 119.99962 * 179.97438 * 11 10 9 14 14 N 1.31631 * 119.99837 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00136 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46913 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47129 * 120.00181 * 15 13 11 18 18 H 1.48499 * 109.46713 * 240.00042 * 15 13 11 19 19 N 1.46496 * 109.47217 * 239.99560 * 2 1 3 20 20 C 1.39163 * 120.00063 * 85.00145 * 19 2 1 21 21 C 1.39203 * 120.05609 * 359.97438 * 20 19 2 22 22 N 1.32015 * 119.93039 * 180.02562 * 21 20 19 23 23 C 1.32393 * 120.05219 * 0.02562 * 22 21 20 24 24 F 1.35105 * 119.93953 * 180.02562 * 23 22 21 25 25 C 1.38467 * 120.12681 * 359.97438 * 23 22 21 26 26 N 1.32218 * 120.06869 * 359.72212 * 25 23 22 27 27 H 1.09001 * 109.47273 * 300.00092 * 1 2 3 28 28 H 1.09002 * 109.46911 * 60.00164 * 1 2 3 29 29 H 1.09009 * 109.47170 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.46955 * 305.00200 * 4 2 1 31 31 H 1.09000 * 109.47050 * 65.00029 * 4 2 1 32 32 H 1.08993 * 109.47839 * 299.99931 * 5 4 2 33 33 H 1.09000 * 109.47160 * 60.00369 * 5 4 2 34 34 H 0.96999 * 120.00076 * 0.02562 * 6 5 4 35 35 H 1.09004 * 109.47043 * 300.00223 * 9 7 6 36 36 H 1.09004 * 109.47476 * 60.00149 * 9 7 6 37 37 H 0.97010 * 119.99929 * 180.02562 * 14 13 11 38 38 H 0.97001 * 120.00360 * 265.00237 * 19 2 1 39 39 H 1.08001 * 120.03871 * 359.97438 * 21 20 19 40 40 H 1.08002 * 119.96675 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3137 6 7 4.0530 -1.3034 2.5103 7 6 5.3739 -1.3396 2.7755 8 8 6.1583 -0.8004 2.0238 9 6 5.8762 -2.0498 4.0060 10 16 7.6801 -1.9221 4.0823 11 6 7.9870 -2.8106 5.5726 12 1 7.1633 -3.2335 6.1286 13 6 9.2874 -2.9680 6.0315 14 7 10.2915 -2.4539 5.3531 15 14 9.6129 -3.9107 7.6111 16 1 8.3252 -4.3845 8.1790 17 1 10.4854 -5.0767 7.3209 18 1 10.2867 -3.0195 8.5893 19 7 2.0183 -0.6907 -1.1961 20 6 2.1513 0.0035 -2.3949 21 6 1.8201 1.3540 -2.4590 22 7 1.9467 2.0099 -3.5976 23 6 2.3877 1.3842 -4.6778 24 9 2.5168 2.0578 -5.8417 25 6 2.7178 0.0408 -4.6166 26 7 2.5986 -0.6194 -3.4773 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.6053 -0.2617 2.1370 31 1 1.7515 -1.7715 1.2057 32 1 3.9994 -1.0728 0.4261 33 1 3.8531 0.4370 1.3573 34 1 3.4257 -1.7348 3.1113 35 1 5.4419 -1.5900 4.8937 36 1 5.5876 -3.1001 3.9627 37 1 11.2004 -2.5642 5.6736 38 1 2.2490 -1.6319 -1.1525 39 1 1.4591 1.8645 -1.5783 40 1 3.0777 -0.4670 -5.4992 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098837662.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:27 Heat of formation + Delta-G solvation = -30.782093 kcal Electronic energy + Delta-G solvation = -23895.133114 eV Core-core repulsion = 19978.981312 eV Total energy + Delta-G solvation = -3916.151802 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.23120 -41.45146 -39.35796 -38.08448 -35.12162 -34.56711 -32.60000 -32.45419 -30.27958 -29.33585 -28.26283 -25.54945 -25.52303 -24.24284 -23.26160 -21.61666 -20.40151 -18.85732 -18.39854 -18.00338 -17.86270 -16.60155 -16.38100 -16.19954 -15.93359 -15.44355 -15.36340 -14.83366 -14.80313 -14.58091 -14.09798 -14.04318 -13.89671 -13.81481 -13.43006 -13.13018 -12.63459 -12.49263 -12.23480 -12.07810 -11.99269 -11.73749 -11.67954 -11.46676 -11.09378 -11.04930 -10.78662 -10.66598 -9.83722 -9.68268 -9.47377 -9.10896 -8.98516 -8.29361 -8.26486 -6.53354 -6.24490 -3.95394 0.35938 0.68882 2.37195 2.95851 3.03709 3.12497 3.19294 3.19448 3.25385 3.29701 3.61209 3.80538 3.93970 4.17437 4.21808 4.29603 4.33075 4.53568 4.70876 4.83617 4.85641 4.96254 5.10786 5.12024 5.14694 5.16011 5.28982 5.55926 5.59214 5.62907 5.81955 5.83648 5.85365 6.08934 6.16563 6.51309 6.84003 6.86091 7.35203 7.56921 7.61801 8.32536 8.54644 9.20910 10.82960 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.022394 B = 0.001880 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.056630 B =14888.364771 C =15774.574007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.150 3.850 3 H 0.090 0.910 4 C -0.139 4.139 5 C 0.120 3.880 6 N -0.741 5.741 7 C 0.531 3.469 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 N -0.703 5.703 20 C 0.354 3.646 21 C 0.027 3.973 22 N -0.430 5.430 23 C 0.181 3.819 24 F -0.110 7.110 25 C 0.100 3.900 26 N -0.479 5.479 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.398 0.602 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.268 0.732 38 H 0.411 0.589 39 H 0.175 0.825 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.126 4.206 -13.682 28.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.044 3.956 3 H 0.108 0.892 4 C -0.177 4.177 5 C -0.005 4.005 6 N -0.396 5.396 7 C 0.317 3.683 8 O -0.390 6.390 9 C -0.304 4.304 10 S 0.165 5.835 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.137 4.137 14 N -0.502 5.502 15 Si 0.746 3.254 16 H -0.196 1.196 17 H -0.205 1.205 18 H -0.206 1.206 19 N -0.336 5.336 20 C 0.114 3.886 21 C -0.142 4.142 22 N -0.148 5.148 23 C 0.024 3.976 24 F -0.089 7.089 25 C -0.063 4.063 26 N -0.200 5.200 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.232 0.768 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.248 0.752 39 H 0.192 0.808 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -22.654 5.272 -14.860 27.601 hybrid contribution -0.847 -1.633 1.918 2.658 sum -23.501 3.638 -12.941 27.074 Atomic orbital electron populations 1.22316 0.94473 1.03214 1.02926 1.21079 0.94251 0.97207 0.83037 0.89176 1.22107 0.95664 1.02263 0.97664 1.21262 0.92413 0.98071 0.88732 1.45982 1.07876 1.58719 1.26991 1.20335 0.81442 0.79701 0.86835 1.90717 1.54934 1.44299 1.49025 1.23529 1.06928 1.02536 0.97404 1.85435 0.92113 1.72740 1.33173 1.22901 0.95493 1.40144 1.09813 0.90858 1.25006 0.95061 0.95656 0.97941 1.70031 0.99362 1.42621 1.38218 0.86105 0.78403 0.79267 0.81649 1.19619 1.20550 1.20555 1.44692 1.70237 1.13243 1.05433 1.19378 0.91463 0.90150 0.87587 1.22950 1.04517 0.90802 0.95971 1.67566 1.09858 1.38839 0.98564 1.18778 1.05796 0.89581 0.83410 1.91625 1.93639 1.80846 1.42821 1.23308 0.95930 0.90301 0.96727 1.68045 1.16470 1.37396 0.98126 0.90758 0.91979 0.91688 0.88936 0.90170 0.91479 0.91541 0.76808 0.89198 0.89220 0.92206 0.75174 0.80797 0.80175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.56 9.42 37.16 0.35 -0.21 16 2 C 0.15 0.66 2.26 -67.93 -0.15 0.50 16 3 H 0.09 0.38 6.47 -51.93 -0.34 0.04 16 4 C -0.14 -0.66 4.87 -26.73 -0.13 -0.79 16 5 C 0.12 1.14 5.56 -4.04 -0.02 1.11 16 6 N -0.74 -8.66 5.56 -60.29 -0.33 -9.00 16 7 C 0.53 9.48 7.85 -10.99 -0.09 9.39 16 8 O -0.52 -11.53 15.86 5.55 0.09 -11.44 16 9 C -0.15 -2.99 6.16 36.00 0.22 -2.77 16 10 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 11 C -0.54 -15.09 9.50 30.94 0.29 -14.80 16 12 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 13 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 14 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 15 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 19 N -0.70 -4.41 4.70 -53.81 -0.25 -4.67 16 20 C 0.35 2.99 7.65 -154.62 -1.18 1.81 16 21 C 0.03 0.23 10.01 -17.11 -0.17 0.05 16 22 N -0.43 -4.54 10.50 -13.24 -0.14 -4.68 16 23 C 0.18 1.81 8.43 -17.23 -0.15 1.66 16 24 F -0.11 -1.12 17.29 2.25 0.04 -1.08 16 25 C 0.10 0.85 11.20 -17.30 -0.19 0.66 16 26 N -0.48 -4.59 10.53 -12.16 -0.13 -4.72 16 27 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.06 0.24 7.69 -51.93 -0.40 -0.16 16 29 H 0.06 0.23 8.14 -51.92 -0.42 -0.20 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.75 7.75 -51.93 -0.40 0.35 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.40 3.36 8.47 -40.82 -0.35 3.01 16 35 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 36 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 37 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.41 2.56 8.73 -40.82 -0.36 2.21 16 39 H 0.18 0.98 6.10 -52.49 -0.32 0.66 16 40 H 0.18 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 363.89 15.07 5.48 5.48 Total: -1.00 -36.58 363.89 -8.15 -44.73 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -5.09 Total: -0.25 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -1.32 Total: -1.41 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: -0.12 Total: -48.37 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 9 Polarization: -1.12 SS G_CDS: 0.04 Total: -1.08 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.58 -8.15 -44.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098837662.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.943 kcal (2) G-P(sol) polarization free energy of solvation -36.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds